Wall clock time and date at job start Mon Mar 30 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47183 * 2 1 4 4 C 1.50705 * 109.47100 * 240.00311 * 2 1 3 5 5 H 1.07992 * 120.00219 * 270.26574 * 4 2 1 6 6 C 1.37877 * 119.99553 * 90.53680 * 4 2 1 7 7 N 1.31522 * 119.99684 * 184.54451 * 6 4 2 8 8 Si 1.86796 * 120.00344 * 4.54608 * 6 4 2 9 9 H 1.48499 * 109.47161 * 91.96866 * 8 6 4 10 10 H 1.48497 * 109.47266 * 211.96863 * 8 6 4 11 11 H 1.48502 * 109.47000 * 331.96896 * 8 6 4 12 12 C 1.53006 * 109.47167 * 120.00631 * 2 1 3 13 13 H 1.08998 * 110.65893 * 61.61431 * 12 2 1 14 14 C 1.54593 * 110.73569 * 298.42488 * 12 2 1 15 15 N 1.48394 * 102.40523 * 267.22692 * 14 12 2 16 16 C 1.46901 * 111.00880 * 94.64128 * 15 14 12 17 17 C 1.40202 * 107.91415 * 332.80248 * 15 14 12 18 18 C 1.39369 * 129.92103 * 198.02616 * 17 15 14 19 19 C 1.37923 * 120.23671 * 180.36439 * 18 17 15 20 20 C 1.38484 * 120.22856 * 359.97438 * 19 18 17 21 21 F 1.35103 * 120.07918 * 179.90933 * 20 19 18 22 22 C 1.38472 * 119.83829 * 359.88826 * 20 19 18 23 23 C 1.37941 * 120.05814 * 0.02562 * 22 20 19 24 24 H 1.08994 * 109.47119 * 186.67086 * 1 2 3 25 25 H 1.08998 * 109.46983 * 306.67245 * 1 2 3 26 26 H 1.08995 * 109.47284 * 66.66929 * 1 2 3 27 27 H 0.97000 * 120.00152 * 179.97438 * 7 6 4 28 28 H 1.09003 * 110.78226 * 25.57101 * 14 12 2 29 29 H 1.08998 * 110.77750 * 149.00327 * 14 12 2 30 30 H 1.08999 * 109.47296 * 293.27622 * 16 15 14 31 31 H 1.09003 * 109.46834 * 53.27458 * 16 15 14 32 32 H 1.08998 * 109.46885 * 173.27385 * 16 15 14 33 33 H 1.08005 * 119.88420 * 0.33370 * 18 17 15 34 34 H 1.08000 * 119.88479 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.97453 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2083 -1.7756 -1.2052 6 6 2.2727 0.0007 -2.3871 7 7 2.6250 -0.6305 -3.4859 8 14 2.0980 1.8605 -2.3935 9 1 3.4105 2.4820 -2.0834 10 1 1.6415 2.3102 -3.7332 11 1 1.1030 2.2677 -1.3691 12 6 2.0401 -0.7214 1.2492 13 1 1.7111 -1.7606 1.2544 14 6 1.5737 0.0069 2.5306 15 7 2.7108 0.9181 2.8112 16 6 2.4736 2.2488 2.2358 17 6 3.8699 0.3387 2.2760 18 6 5.2105 0.6049 2.5486 19 6 6.2042 -0.0897 1.8909 20 6 5.8766 -1.0569 0.9555 21 9 6.8524 -1.7342 0.3117 22 6 4.5467 -1.3284 0.6819 23 6 3.5508 -0.6365 1.3394 24 1 -0.3633 -1.0207 0.1194 25 1 -0.3633 0.6138 0.8242 26 1 -0.3633 0.4070 -0.9436 27 1 2.7937 -0.1303 -4.2997 28 1 0.6596 0.5707 2.3441 29 1 1.4330 -0.7005 3.3479 30 1 2.4728 2.1795 1.1480 31 1 1.5091 2.6253 2.5766 32 1 3.2629 2.9290 2.5560 33 1 5.4723 1.3581 3.2770 34 1 7.2412 0.1214 2.1062 35 1 4.2888 -2.0819 -0.0475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:13 Heat of formation + Delta-G solvation = -25.848922 kcal Electronic energy + Delta-G solvation = -18807.227695 eV Core-core repulsion = 15911.936488 eV Total energy + Delta-G solvation = -2895.291208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.83885 -41.90390 -37.76845 -36.13205 -33.89239 -32.16262 -30.46295 -29.45387 -27.23755 -26.46088 -24.30021 -22.95183 -22.06517 -20.84330 -19.09438 -18.12904 -17.54901 -17.33645 -16.73387 -16.49701 -15.74372 -15.58015 -15.15526 -14.72471 -14.51248 -14.29726 -14.01810 -13.94852 -13.83710 -13.18630 -13.05249 -12.84867 -12.63155 -12.60702 -12.55332 -12.18787 -11.82165 -11.46009 -11.33970 -10.99867 -10.70562 -10.16604 -9.81009 -8.79772 -8.28312 -6.28446 0.17076 0.35137 1.27259 1.28951 1.38442 2.31676 2.54214 2.80040 3.09425 3.29595 3.70839 3.86097 4.05961 4.16797 4.23211 4.28138 4.46585 4.56159 4.60659 4.66242 4.81582 4.85832 4.93068 4.97415 5.01000 5.05632 5.20604 5.22087 5.29860 5.40834 5.52172 5.69030 5.73233 5.74345 5.95365 6.27715 6.32081 6.76750 7.35037 8.88959 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.011405 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.287177 B = 2454.515286 C = 3246.099605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 H 0.035 0.965 4 C -0.493 4.493 5 H 0.029 0.971 6 C 0.012 3.988 7 N -0.952 5.952 8 Si 0.923 3.077 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.230 1.230 12 C -0.068 4.068 13 H 0.074 0.926 14 C 0.051 3.949 15 N -0.485 5.485 16 C 0.016 3.984 17 C 0.063 3.937 18 C -0.084 4.084 19 C -0.136 4.136 20 C 0.058 3.942 21 F -0.152 7.152 22 C -0.125 4.125 23 C -0.091 4.091 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.016 0.984 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 6.162 14.932 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.047 0.953 6 C -0.184 4.184 7 N -0.594 5.594 8 Si 0.748 3.252 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.153 1.153 12 C -0.087 4.087 13 H 0.092 0.908 14 C -0.075 4.075 15 N -0.202 5.202 16 C -0.130 4.130 17 C -0.033 4.033 18 C -0.103 4.103 19 C -0.155 4.155 20 C 0.039 3.961 21 F -0.131 7.131 22 C -0.145 4.145 23 C -0.093 4.093 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.034 0.966 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.182 0.818 34 H 0.185 0.815 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.108 6.286 15.301 16.579 hybrid contribution 0.264 -0.207 -2.185 2.210 sum 1.372 6.079 13.116 14.522 Atomic orbital electron populations 1.21970 0.96497 1.00906 0.99957 1.19240 0.93762 0.95440 0.91704 0.94743 1.21143 1.42060 0.94543 0.95365 0.95271 1.25801 0.94922 1.02549 0.95144 1.70061 1.50110 1.37559 1.01623 0.86093 0.79468 0.81533 0.78140 1.20573 1.21690 1.15283 1.21452 0.89633 1.00954 0.96694 0.90810 1.23542 0.93466 0.95310 0.95169 1.60585 1.00765 1.04106 1.54786 1.22744 1.04230 0.88897 0.97094 1.19929 0.92912 0.96399 0.94069 1.20550 0.88485 1.00851 1.00437 1.21106 1.02002 0.95821 0.96523 1.17774 0.84461 0.96589 0.97317 1.91430 1.61621 1.79196 1.80875 1.20403 0.91356 1.02256 1.00491 1.20863 0.96149 0.97933 0.94398 0.93282 0.91756 0.94961 0.93002 0.87664 0.88064 0.96579 0.88468 0.89609 0.81756 0.81489 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 8.63 71.98 0.62 -4.41 16 2 C 0.02 0.74 1.36 -11.54 -0.02 0.72 16 3 H 0.03 1.50 2.90 -2.39 -0.01 1.49 16 4 C -0.49 -27.04 7.88 25.60 0.20 -26.84 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.69 5.47 84.65 0.46 1.15 16 7 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 8 Si 0.92 43.85 26.71 68.60 1.83 45.68 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.23 -9.64 6.49 99.48 0.65 -9.00 16 12 C -0.07 -2.52 2.55 -10.71 -0.03 -2.55 16 13 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 14 C 0.05 1.44 6.43 86.56 0.56 1.99 16 15 N -0.49 -13.79 5.34 -712.04 -3.80 -17.59 16 16 C 0.02 0.41 9.31 127.69 1.19 1.60 16 17 C 0.06 2.05 5.57 38.24 0.21 2.26 16 18 C -0.08 -2.30 10.07 22.47 0.23 -2.08 16 19 C -0.14 -3.93 10.00 22.25 0.22 -3.71 16 20 C 0.06 2.16 7.31 22.38 0.16 2.33 16 21 F -0.15 -5.84 17.27 44.97 0.78 -5.06 16 22 C -0.13 -5.30 9.46 22.25 0.21 -5.09 16 23 C -0.09 -3.54 5.23 -19.49 -0.10 -3.64 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.87 6.47 -2.39 -0.02 1.85 16 26 H 0.03 1.27 7.73 -2.39 -0.02 1.25 16 27 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.11 2.57 5.59 -2.39 -0.01 2.55 16 29 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.02 0.50 5.62 -2.39 -0.01 0.49 16 31 H 0.10 1.99 7.95 -2.39 -0.02 1.97 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.10 4.97 8.04 -2.91 -0.02 4.94 16 Total: -1.00 -66.88 282.58 4.06 -62.82 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.03 Total: 12.18 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.92 Total: -38.26 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.50 Total: -77.36 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.78 Total: -5.06 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.83 Total: 45.68 kcal Total: -66.88 4.06 -62.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.973 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds