Wall clock time and date at job start Mon Mar 30 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47030 * 2 1 4 4 C 1.50698 * 109.47200 * 240.00407 * 2 1 3 5 5 H 1.07996 * 119.99954 * 245.49625 * 4 2 1 6 6 C 1.37883 * 120.00199 * 65.49498 * 4 2 1 7 7 N 1.31517 * 119.99934 * 191.62508 * 6 4 2 8 8 Si 1.86796 * 119.99756 * 11.62354 * 6 4 2 9 9 H 1.48502 * 109.47154 * 95.13855 * 8 6 4 10 10 H 1.48501 * 109.46994 * 215.13681 * 8 6 4 11 11 H 1.48505 * 109.47364 * 335.13787 * 8 6 4 12 12 C 1.52993 * 109.47664 * 119.99987 * 2 1 3 13 13 H 1.09009 * 110.68815 * 53.61996 * 12 2 1 14 14 C 1.54593 * 110.78204 * 177.12189 * 12 2 1 15 15 C 1.51583 * 102.92112 * 143.60025 * 14 12 2 16 16 C 1.37946 * 131.51733 * 163.30026 * 15 14 12 17 17 C 1.38471 * 120.06411 * 181.07054 * 16 15 14 18 18 F 1.35106 * 120.08684 * 180.22194 * 17 16 15 19 19 C 1.38483 * 119.83028 * 0.24313 * 17 16 15 20 20 C 1.37922 * 120.23883 * 359.85027 * 19 17 16 21 21 C 1.38934 * 107.97050 * 344.49063 * 15 14 12 22 22 N 1.40189 * 110.92692 * 358.71421 * 21 15 14 23 23 C 1.46909 * 110.99470 * 256.96230 * 22 21 15 24 24 H 1.09000 * 109.47321 * 313.73083 * 1 2 3 25 25 H 1.08997 * 109.47022 * 73.73458 * 1 2 3 26 26 H 1.09005 * 109.46663 * 193.73270 * 1 2 3 27 27 H 0.96999 * 119.99454 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.73399 * 262.15808 * 14 12 2 29 29 H 1.08992 * 110.73139 * 25.29099 * 14 12 2 30 30 H 1.08002 * 119.96789 * 1.35298 * 16 15 14 31 31 H 1.08007 * 119.88407 * 179.87188 * 19 17 16 32 32 H 1.07998 * 119.88700 * 180.02562 * 20 19 17 33 33 H 1.08998 * 109.46871 * 57.08797 * 23 22 21 34 34 H 1.09008 * 109.46776 * 177.08530 * 23 22 21 35 35 H 1.08996 * 109.47351 * 297.08249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5781 -1.6372 -1.1339 6 6 1.7952 -0.1768 -2.4796 7 7 2.0255 -0.8961 -3.5564 8 14 1.1470 1.5675 -2.6425 9 1 2.2832 2.5002 -2.8529 10 1 0.2215 1.6454 -3.8013 11 1 0.4209 1.9435 -1.4029 12 6 2.0401 -0.7212 1.2491 13 1 1.5983 -1.7146 1.3277 14 6 3.5839 -0.8020 1.2439 15 6 3.9373 -0.6300 2.7079 16 6 5.0960 -0.8990 3.4065 17 6 5.1534 -0.6666 4.7704 18 9 6.2894 -0.9257 5.4543 19 6 4.0434 -0.1684 5.4317 20 6 2.8829 0.0997 4.7362 21 6 2.8188 -0.1300 3.3630 22 7 1.7621 0.0743 2.4647 23 6 1.6160 1.4994 2.1393 24 1 -0.3634 0.7104 0.7426 25 1 -0.3633 0.2878 -0.9865 26 1 -0.3633 -0.9984 0.2440 27 1 1.8583 -0.5208 -4.4351 28 1 3.9184 -1.7714 0.8746 29 1 4.0104 0.0046 0.6477 30 1 5.9606 -1.2869 2.8885 31 1 4.0866 0.0112 6.4958 32 1 2.0207 0.4885 5.2575 33 1 2.5539 1.8771 1.7322 34 1 0.8233 1.6242 1.4015 35 1 1.3623 2.0542 3.0425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:30 Heat of formation + Delta-G solvation = 0.863622 kcal Electronic energy + Delta-G solvation = -18284.692196 eV Core-core repulsion = 15390.559331 eV Total energy + Delta-G solvation = -2894.132865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.76185 -40.67205 -37.02999 -33.78458 -32.18937 -31.39093 -29.44307 -27.87480 -25.49822 -25.04352 -23.16417 -21.22752 -21.16191 -18.98798 -17.28328 -16.90760 -16.42895 -15.98083 -15.49836 -14.72738 -14.51710 -14.30074 -13.97807 -13.37956 -12.85321 -12.83457 -12.71147 -12.50692 -12.37767 -12.09196 -12.00021 -11.20110 -10.96671 -10.84156 -10.71198 -10.48483 -10.27033 -9.94114 -9.45151 -9.14456 -8.95917 -8.81484 -8.52173 -7.55719 -6.15781 -4.12873 1.25552 1.34126 3.22163 3.32632 3.34306 3.63208 4.01777 4.33848 4.35997 4.79026 4.96474 5.16200 5.24703 5.36164 5.43349 5.62492 5.65338 5.79605 5.87348 5.96432 6.11144 6.16743 6.23234 6.31807 6.36906 6.44337 6.55834 6.61835 6.72764 6.82375 6.90568 7.05211 7.27399 7.40767 7.55974 7.72594 8.42180 8.89162 9.48017 10.97011 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.006123 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.026836 B = 4571.517008 C = 4965.020961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.011 3.989 3 H 0.032 0.968 4 C -0.517 4.517 5 H 0.075 0.925 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.865 3.135 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.252 1.252 12 C 0.101 3.899 13 H 0.091 0.909 14 C -0.093 4.093 15 C -0.106 4.106 16 C -0.126 4.126 17 C 0.074 3.926 18 F -0.145 7.145 19 C -0.144 4.144 20 C -0.091 4.091 21 C 0.088 3.912 22 N -0.495 5.495 23 C 0.019 3.981 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 3.412 14.212 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.008 4.008 3 H 0.050 0.950 4 C -0.555 4.555 5 H 0.093 0.907 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.692 3.308 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.176 1.176 12 C -0.005 4.005 13 H 0.109 0.891 14 C -0.132 4.132 15 C -0.109 4.109 16 C -0.146 4.146 17 C 0.054 3.946 18 F -0.124 7.124 19 C -0.163 4.163 20 C -0.111 4.111 21 C -0.009 4.009 22 N -0.212 5.212 23 C -0.126 4.126 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.461 3.267 14.213 14.657 hybrid contribution 0.639 0.997 -0.497 1.284 sum 2.100 4.264 13.716 14.516 Atomic orbital electron populations 1.22248 0.98221 0.99848 0.99460 1.19387 0.92835 0.96157 0.92431 0.94997 1.20846 1.36573 1.09573 0.88481 0.90698 1.24937 0.94698 0.97270 0.95773 1.69944 1.48915 1.36191 0.98084 0.87181 0.79201 0.86011 0.78437 1.20884 1.21372 1.17634 1.22794 0.92454 0.97458 0.87831 0.89107 1.21713 0.97803 1.04040 0.89594 1.21271 0.92522 0.99581 0.97503 1.20336 0.98969 1.03180 0.92083 1.17432 0.83099 1.03882 0.90149 1.91463 1.48963 1.92256 1.79724 1.20783 0.92252 1.02840 1.00451 1.20272 0.97624 1.01668 0.91540 1.19844 0.89910 0.98110 0.93050 1.60391 1.39369 1.09051 1.12350 1.22681 1.02016 0.86463 1.01484 0.95051 0.93516 0.93529 0.92653 0.89446 0.89039 0.85085 0.84845 0.85184 0.94908 0.88857 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.86 37.16 0.29 -2.58 16 2 C 0.01 0.24 0.79 -91.78 -0.07 0.16 16 3 H 0.03 0.69 4.70 -51.93 -0.24 0.45 16 4 C -0.52 -13.34 8.36 -34.44 -0.29 -13.63 16 5 H 0.07 2.09 7.73 -52.49 -0.41 1.69 16 6 C 0.08 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 8 Si 0.86 20.24 25.68 -169.99 -4.36 15.88 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.25 -5.46 5.44 56.52 0.31 -5.15 16 12 C 0.10 1.92 2.79 -66.32 -0.19 1.73 16 13 H 0.09 1.79 8.09 -51.92 -0.42 1.37 16 14 C -0.09 -1.68 5.58 -26.61 -0.15 -1.83 16 15 C -0.11 -1.73 6.23 -104.04 -0.65 -2.38 16 16 C -0.13 -1.87 10.01 -39.60 -0.40 -2.26 16 17 C 0.07 1.04 7.31 -39.41 -0.29 0.75 16 18 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 19 C -0.14 -1.81 10.00 -39.61 -0.40 -2.21 16 20 C -0.09 -1.22 10.07 -39.27 -0.40 -1.62 16 21 C 0.09 1.40 5.58 -83.35 -0.47 0.94 16 22 N -0.49 -8.45 5.25 -169.31 -0.89 -9.34 16 23 C 0.02 0.30 8.08 60.07 0.49 0.78 16 24 H 0.03 0.57 6.05 -51.93 -0.31 0.25 16 25 H 0.05 1.01 5.03 -51.93 -0.26 0.75 16 26 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.09 1.74 7.88 -51.93 -0.41 1.33 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.03 0.53 7.77 -51.93 -0.40 0.13 16 34 H 0.09 1.55 4.22 -51.92 -0.22 1.33 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -27.83 278.09 -7.29 -35.12 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.44 Total: 1.74 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.60 Total: -20.18 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.12 Total: -34.76 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.36 Total: 15.88 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.83 -7.29 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.986 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds