Wall clock time and date at job start Mon Mar 30 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47030 * 2 1 4 4 C 1.50698 * 109.47200 * 240.00407 * 2 1 3 5 5 H 1.07996 * 119.99954 * 245.49625 * 4 2 1 6 6 C 1.37883 * 120.00199 * 65.49498 * 4 2 1 7 7 N 1.31517 * 119.99934 * 191.62508 * 6 4 2 8 8 Si 1.86796 * 119.99756 * 11.62354 * 6 4 2 9 9 H 1.48502 * 109.47154 * 95.13855 * 8 6 4 10 10 H 1.48501 * 109.46994 * 215.13681 * 8 6 4 11 11 H 1.48505 * 109.47364 * 335.13787 * 8 6 4 12 12 C 1.52993 * 109.47664 * 119.99987 * 2 1 3 13 13 H 1.09009 * 110.68815 * 53.61996 * 12 2 1 14 14 C 1.54593 * 110.78204 * 177.12189 * 12 2 1 15 15 C 1.51583 * 102.92112 * 143.60025 * 14 12 2 16 16 C 1.37946 * 131.51733 * 163.30026 * 15 14 12 17 17 C 1.38471 * 120.06411 * 181.07054 * 16 15 14 18 18 F 1.35106 * 120.08684 * 180.22194 * 17 16 15 19 19 C 1.38483 * 119.83028 * 0.24313 * 17 16 15 20 20 C 1.37922 * 120.23883 * 359.85027 * 19 17 16 21 21 C 1.38934 * 107.97050 * 344.49063 * 15 14 12 22 22 N 1.40189 * 110.92692 * 358.71421 * 21 15 14 23 23 C 1.46909 * 110.99470 * 256.96230 * 22 21 15 24 24 H 1.09000 * 109.47321 * 313.73083 * 1 2 3 25 25 H 1.08997 * 109.47022 * 73.73458 * 1 2 3 26 26 H 1.09005 * 109.46663 * 193.73270 * 1 2 3 27 27 H 0.96999 * 119.99454 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.73399 * 262.15808 * 14 12 2 29 29 H 1.08992 * 110.73139 * 25.29099 * 14 12 2 30 30 H 1.08002 * 119.96789 * 1.35298 * 16 15 14 31 31 H 1.08007 * 119.88407 * 179.87188 * 19 17 16 32 32 H 1.07998 * 119.88700 * 180.02562 * 20 19 17 33 33 H 1.08998 * 109.46871 * 57.08797 * 23 22 21 34 34 H 1.09008 * 109.46776 * 177.08530 * 23 22 21 35 35 H 1.08996 * 109.47351 * 297.08249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5781 -1.6372 -1.1339 6 6 1.7952 -0.1768 -2.4796 7 7 2.0255 -0.8961 -3.5564 8 14 1.1470 1.5675 -2.6425 9 1 2.2832 2.5002 -2.8529 10 1 0.2215 1.6454 -3.8013 11 1 0.4209 1.9435 -1.4029 12 6 2.0401 -0.7212 1.2491 13 1 1.5983 -1.7146 1.3277 14 6 3.5839 -0.8020 1.2439 15 6 3.9373 -0.6300 2.7079 16 6 5.0960 -0.8990 3.4065 17 6 5.1534 -0.6666 4.7704 18 9 6.2894 -0.9257 5.4543 19 6 4.0434 -0.1684 5.4317 20 6 2.8829 0.0997 4.7362 21 6 2.8188 -0.1300 3.3630 22 7 1.7621 0.0743 2.4647 23 6 1.6160 1.4994 2.1393 24 1 -0.3634 0.7104 0.7426 25 1 -0.3633 0.2878 -0.9865 26 1 -0.3633 -0.9984 0.2440 27 1 1.8583 -0.5208 -4.4351 28 1 3.9184 -1.7714 0.8746 29 1 4.0104 0.0046 0.6477 30 1 5.9606 -1.2869 2.8885 31 1 4.0866 0.0112 6.4958 32 1 2.0207 0.4885 5.2575 33 1 2.5539 1.8771 1.7322 34 1 0.8233 1.6242 1.4015 35 1 1.3623 2.0542 3.0425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:30 Heat of formation + Delta-G solvation = -15.391821 kcal Electronic energy + Delta-G solvation = -18285.397085 eV Core-core repulsion = 15390.559331 eV Total energy + Delta-G solvation = -2894.837754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.85325 -41.96333 -38.33049 -35.52253 -33.43214 -33.26159 -30.65018 -29.20579 -26.98553 -26.76890 -24.55905 -22.57346 -22.35432 -20.60788 -19.04447 -18.06152 -17.65567 -17.39997 -16.62524 -16.43238 -15.95458 -15.76338 -15.21157 -14.76567 -14.35824 -14.33890 -14.06164 -13.83259 -13.76942 -13.56651 -13.36605 -12.91987 -12.51302 -12.30893 -12.18820 -11.95347 -11.90297 -11.61788 -11.20625 -11.02180 -10.58779 -10.22747 -9.94563 -8.81103 -8.26457 -6.26759 0.11594 0.23670 1.35764 1.40556 1.49349 2.38243 2.50230 2.74019 3.08968 3.20071 3.64777 3.84264 3.99865 4.03390 4.21020 4.28495 4.45600 4.51638 4.60252 4.66784 4.71316 4.85536 4.91688 4.99236 5.04580 5.04748 5.09357 5.17655 5.25438 5.40115 5.44233 5.64385 5.72993 5.78243 5.95580 6.29155 6.37240 6.78943 7.37071 8.89924 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.006123 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.026836 B = 4571.517008 C = 4965.020961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.015 3.985 3 H 0.038 0.962 4 C -0.511 4.511 5 H 0.037 0.963 6 C 0.017 3.983 7 N -0.947 5.947 8 Si 0.924 3.076 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.219 1.219 12 C 0.104 3.896 13 H 0.078 0.922 14 C -0.091 4.091 15 C -0.125 4.125 16 C -0.133 4.133 17 C 0.070 3.930 18 F -0.145 7.145 19 C -0.128 4.128 20 C -0.081 4.081 21 C 0.071 3.929 22 N -0.492 5.492 23 C 0.016 3.984 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.023 0.977 34 H 0.087 0.913 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 5.319 17.301 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.004 4.004 3 H 0.056 0.944 4 C -0.549 4.549 5 H 0.055 0.945 6 C -0.180 4.180 7 N -0.587 5.587 8 Si 0.748 3.252 9 H -0.208 1.208 10 H -0.218 1.218 11 H -0.142 1.142 12 C -0.003 4.003 13 H 0.096 0.904 14 C -0.129 4.129 15 C -0.127 4.127 16 C -0.152 4.152 17 C 0.051 3.949 18 F -0.123 7.123 19 C -0.147 4.147 20 C -0.101 4.101 21 C -0.025 4.025 22 N -0.209 5.209 23 C -0.129 4.129 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.042 0.958 34 H 0.105 0.895 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.664 5.179 17.342 18.111 hybrid contribution 0.986 0.309 -1.364 1.712 sum 1.650 5.488 15.978 16.974 Atomic orbital electron populations 1.22177 0.96911 1.00748 0.99683 1.19298 0.93735 0.95929 0.91448 0.94420 1.21123 1.35102 1.08271 0.90453 0.94511 1.25773 0.95454 1.01412 0.95396 1.70094 1.51525 1.38377 0.98715 0.86226 0.78751 0.80724 0.79526 1.20838 1.21781 1.14154 1.22519 0.92692 0.96985 0.88138 0.90419 1.21530 0.97413 1.02701 0.91264 1.21076 0.93765 1.01670 0.96239 1.20434 0.98710 1.03214 0.92859 1.17559 0.83685 1.03903 0.89801 1.91471 1.49067 1.92258 1.79531 1.21162 0.90959 1.00564 1.02027 1.20570 0.98780 1.00503 0.90207 1.20040 0.89262 0.99158 0.94084 1.60405 1.39805 1.09494 1.11156 1.22749 1.01320 0.85965 1.02847 0.92000 0.94738 0.93695 0.92792 0.90784 0.90786 0.84592 0.81335 0.82308 0.95807 0.89488 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 7.86 71.98 0.57 -4.84 16 2 C 0.02 0.64 0.79 -11.54 -0.01 0.63 16 3 H 0.04 1.58 4.70 -2.38 -0.01 1.57 16 4 C -0.51 -27.27 8.36 25.60 0.21 -27.06 16 5 H 0.04 2.18 7.73 -2.91 -0.02 2.16 16 6 C 0.02 0.94 5.32 84.66 0.45 1.39 16 7 N -0.95 -57.70 13.96 21.45 0.30 -57.40 16 8 Si 0.92 41.72 25.68 68.60 1.76 43.48 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.22 -8.65 5.44 99.48 0.54 -8.11 16 12 C 0.10 3.95 2.79 45.26 0.13 4.07 16 13 H 0.08 3.13 8.09 -2.38 -0.02 3.11 16 14 C -0.09 -3.38 5.58 30.67 0.17 -3.21 16 15 C -0.12 -4.00 6.23 -19.49 -0.12 -4.12 16 16 C -0.13 -3.78 10.01 22.26 0.22 -3.56 16 17 C 0.07 1.77 7.31 22.38 0.16 1.94 16 18 F -0.14 -3.65 17.27 44.97 0.78 -2.87 16 19 C -0.13 -2.67 10.00 22.25 0.22 -2.45 16 20 C -0.08 -1.83 10.07 22.47 0.23 -1.61 16 21 C 0.07 2.11 5.58 38.24 0.21 2.32 16 22 N -0.49 -15.79 5.25 -689.57 -3.62 -19.42 16 23 C 0.02 0.47 8.08 127.69 1.03 1.50 16 24 H 0.06 2.05 6.05 -2.39 -0.01 2.04 16 25 H 0.03 1.42 5.03 -2.39 -0.01 1.40 16 26 H 0.04 1.75 8.03 -2.38 -0.02 1.73 16 27 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.07 2.94 7.88 -2.39 -0.02 2.92 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.02 0.72 7.77 -2.39 -0.02 0.70 16 34 H 0.09 2.59 4.22 -2.38 -0.01 2.58 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -61.46 278.09 3.62 -57.84 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.93 Total: 13.36 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.48 Total: -34.99 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -3.32 Total: -76.81 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.76 Total: 43.48 kcal Total: -61.46 3.62 -57.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.450 kcal (2) G-P(sol) polarization free energy of solvation -61.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds