Wall clock time and date at job start Mon Mar 30 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47314 * 2 1 4 4 C 1.50696 * 109.47031 * 239.99795 * 2 1 3 5 5 H 1.08002 * 120.00176 * 265.90400 * 4 2 1 6 6 C 1.37879 * 119.99988 * 85.90907 * 4 2 1 7 7 N 1.31520 * 120.00240 * 185.82236 * 6 4 2 8 8 Si 1.86801 * 119.99881 * 5.82074 * 6 4 2 9 9 H 1.48502 * 109.46819 * 85.00014 * 8 6 4 10 10 H 1.48500 * 109.47260 * 204.99725 * 8 6 4 11 11 H 1.48494 * 109.47382 * 324.99973 * 8 6 4 12 12 C 1.52998 * 109.47135 * 119.99991 * 2 1 3 13 13 H 1.09003 * 110.69033 * 63.28835 * 12 2 1 14 14 C 1.54599 * 110.77828 * 300.00222 * 12 2 1 15 15 C 1.51580 * 102.85040 * 216.13907 * 14 12 2 16 16 C 1.37947 * 131.53037 * 196.25896 * 15 14 12 17 17 C 1.38475 * 120.06268 * 179.60414 * 16 15 14 18 18 F 1.35102 * 120.08100 * 179.91883 * 17 16 15 19 19 C 1.38481 * 119.82808 * 359.96341 * 17 16 15 20 20 C 1.37920 * 120.24005 * 0.06283 * 19 17 16 21 21 C 1.38931 * 107.96572 * 16.03042 * 15 14 12 22 22 N 1.40195 * 110.94256 * 0.67698 * 21 15 14 23 23 C 1.46906 * 110.99857 * 103.48448 * 22 21 15 24 24 H 1.09000 * 109.47208 * 305.34899 * 1 2 3 25 25 H 1.09003 * 109.47133 * 65.34506 * 1 2 3 26 26 H 1.08995 * 109.47237 * 185.34601 * 1 2 3 27 27 H 0.96994 * 120.00198 * 180.02562 * 7 6 4 28 28 H 1.08999 * 110.74048 * 97.79644 * 14 12 2 29 29 H 1.09003 * 110.73438 * 334.47494 * 14 12 2 30 30 H 1.08001 * 119.96766 * 359.32826 * 16 15 14 31 31 H 1.08006 * 119.87928 * 180.11741 * 19 17 16 32 32 H 1.08004 * 119.88339 * 180.02562 * 20 19 17 33 33 H 1.08998 * 109.47451 * 300.04454 * 23 22 21 34 34 H 1.08999 * 109.47143 * 60.05110 * 23 22 21 35 35 H 1.08998 * 109.46619 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2753 -1.7618 -1.1856 6 6 2.1818 -0.0182 -2.4134 7 7 2.5096 -0.6596 -3.5138 8 14 1.9186 1.8307 -2.4533 9 1 3.1742 2.5180 -2.0578 10 1 1.5381 2.2471 -3.8270 11 1 0.8345 2.1970 -1.5069 12 6 2.0400 -0.7212 1.2492 13 1 1.7362 -1.7680 1.2406 14 6 1.5414 -0.0162 2.5316 15 6 2.7158 -0.1675 3.4779 16 6 2.8123 -0.0228 4.8463 17 6 4.0251 -0.2292 5.4819 18 9 4.1204 -0.0859 6.8219 19 6 5.1402 -0.5819 4.7403 20 6 5.0469 -0.7268 3.3719 21 6 3.8301 -0.5174 2.7254 22 7 3.5095 -0.5982 1.3630 23 6 3.9967 0.5821 0.6367 24 1 -0.3633 0.5946 0.8382 25 1 -0.3633 0.4287 -0.9340 26 1 -0.3633 -1.0231 0.0957 27 1 2.6151 -0.1726 -4.3460 28 1 0.6585 -0.5169 2.9289 29 1 1.3350 1.0365 2.3378 30 1 1.9421 0.2561 5.4220 31 1 6.0861 -0.7449 5.2354 32 1 5.9201 -1.0024 2.7992 33 1 3.5376 1.4793 1.0518 34 1 5.0801 0.6487 0.7367 35 1 3.7343 0.4938 -0.4175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:34 Heat of formation + Delta-G solvation = -4.475025 kcal Electronic energy + Delta-G solvation = -18359.673117 eV Core-core repulsion = 15465.308751 eV Total energy + Delta-G solvation = -2894.364366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.75419 -40.62290 -36.95909 -33.69595 -32.29382 -31.33083 -29.37940 -27.70920 -25.38325 -25.19692 -23.10653 -21.33799 -21.05337 -18.81246 -17.22633 -16.95951 -16.31507 -16.15275 -15.50910 -14.96699 -14.46811 -14.00028 -13.80105 -13.29797 -12.86963 -12.71906 -12.65637 -12.51397 -12.33726 -12.10014 -11.79764 -11.30932 -10.95870 -10.81918 -10.71903 -10.61725 -10.58078 -9.82481 -9.48059 -9.19171 -8.87072 -8.81601 -8.57693 -7.40860 -6.12915 -4.09508 1.28889 1.34603 3.19153 3.30188 3.31346 3.65642 4.09274 4.33665 4.36499 4.78027 4.95033 5.17290 5.22196 5.33337 5.49525 5.52398 5.66882 5.92461 5.99801 6.06557 6.09321 6.13949 6.23516 6.25113 6.32114 6.47481 6.56303 6.65334 6.70725 6.84770 6.91424 7.07832 7.26522 7.50829 7.66535 7.78398 8.46803 8.95779 9.47740 11.00307 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039195 B = 0.006216 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.204640 B = 4503.094562 C = 4751.091150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 H 0.035 0.965 4 C -0.499 4.499 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.860 3.140 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.262 1.262 12 C 0.102 3.898 13 H 0.091 0.909 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.124 4.124 17 C 0.067 3.933 18 F -0.146 7.146 19 C -0.138 4.138 20 C -0.094 4.094 21 C 0.097 3.903 22 N -0.475 5.475 23 C 0.020 3.980 24 H 0.023 0.977 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 2.830 13.719 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.687 3.313 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.187 1.187 12 C -0.004 4.004 13 H 0.109 0.891 14 C -0.149 4.149 15 C -0.120 4.120 16 C -0.143 4.143 17 C 0.047 3.953 18 F -0.125 7.125 19 C -0.157 4.157 20 C -0.114 4.114 21 C 0.000 4.000 22 N -0.190 5.190 23 C -0.124 4.124 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.866 2.425 13.226 13.576 hybrid contribution -0.444 1.624 0.483 1.751 sum 1.422 4.048 13.709 14.365 Atomic orbital electron populations 1.22029 0.98278 1.00117 0.99292 1.19478 0.92714 0.95991 0.93187 0.94652 1.20853 1.43018 0.98158 0.91607 0.90345 1.24978 0.94840 0.97550 0.95525 1.69891 1.48122 1.35768 0.99553 0.87176 0.79367 0.87191 0.77573 1.19998 1.21448 1.18688 1.22797 0.83618 1.00405 0.93624 0.89136 1.21962 0.95826 1.02278 0.94839 1.21052 0.97903 0.99705 0.93314 1.20262 0.96684 1.03564 0.93818 1.17386 0.94878 1.05996 0.77036 1.91455 1.96929 1.93899 1.30237 1.20810 0.97877 1.03103 0.93905 1.20326 0.96910 1.01312 0.92859 1.20039 0.93594 0.95508 0.90887 1.60079 1.14622 1.39042 1.05297 1.22735 0.98708 0.88264 1.02737 0.95787 0.93257 0.93416 0.92615 0.89873 0.90013 0.85372 0.84810 0.84930 0.96196 0.92672 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.51 37.16 0.32 -2.40 16 2 C 0.01 0.12 0.80 -91.77 -0.07 0.04 16 3 H 0.04 0.77 3.88 -51.93 -0.20 0.57 16 4 C -0.50 -12.82 7.11 -34.44 -0.24 -13.06 16 5 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 6 C 0.07 1.95 5.16 -17.82 -0.09 1.86 16 7 N -0.90 -26.09 13.96 55.43 0.77 -25.31 16 8 Si 0.86 20.07 25.44 -169.99 -4.32 15.75 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -5.83 6.25 56.52 0.35 -5.47 16 12 C 0.10 1.95 2.84 -66.32 -0.19 1.76 16 13 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 14 C -0.11 -1.77 5.50 -26.61 -0.15 -1.92 16 15 C -0.12 -1.86 6.23 -104.04 -0.65 -2.51 16 16 C -0.12 -1.76 10.01 -39.60 -0.40 -2.16 16 17 C 0.07 0.93 7.31 -39.40 -0.29 0.65 16 18 F -0.15 -2.02 17.27 2.25 0.04 -1.98 16 19 C -0.14 -1.80 10.00 -39.61 -0.40 -2.20 16 20 C -0.09 -1.37 10.07 -39.28 -0.40 -1.76 16 21 C 0.10 1.65 5.59 -83.35 -0.47 1.19 16 22 N -0.48 -9.15 5.22 -169.31 -0.88 -10.03 16 23 C 0.02 0.39 8.08 60.07 0.49 0.88 16 24 H 0.02 0.40 7.37 -51.93 -0.38 0.01 16 25 H 0.05 1.02 6.94 -51.93 -0.36 0.66 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.29 7.77 -51.93 -0.40 0.89 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.02 0.36 7.62 -51.93 -0.40 -0.03 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.12 2.61 4.10 -51.93 -0.21 2.39 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -27.70 280.36 -7.23 -34.92 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.52 Total: 2.06 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.53 Total: -19.62 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.11 Total: -35.34 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.32 Total: 15.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.70 -7.23 -34.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.448 kcal (2) G-P(sol) polarization free energy of solvation -27.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds