Wall clock time and date at job start Mon Mar 30 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47314 * 2 1 4 4 C 1.50696 * 109.47031 * 239.99795 * 2 1 3 5 5 H 1.08002 * 120.00176 * 265.90400 * 4 2 1 6 6 C 1.37879 * 119.99988 * 85.90907 * 4 2 1 7 7 N 1.31520 * 120.00240 * 185.82236 * 6 4 2 8 8 Si 1.86801 * 119.99881 * 5.82074 * 6 4 2 9 9 H 1.48502 * 109.46819 * 85.00014 * 8 6 4 10 10 H 1.48500 * 109.47260 * 204.99725 * 8 6 4 11 11 H 1.48494 * 109.47382 * 324.99973 * 8 6 4 12 12 C 1.52998 * 109.47135 * 119.99991 * 2 1 3 13 13 H 1.09003 * 110.69033 * 63.28835 * 12 2 1 14 14 C 1.54599 * 110.77828 * 300.00222 * 12 2 1 15 15 C 1.51580 * 102.85040 * 216.13907 * 14 12 2 16 16 C 1.37947 * 131.53037 * 196.25896 * 15 14 12 17 17 C 1.38475 * 120.06268 * 179.60414 * 16 15 14 18 18 F 1.35102 * 120.08100 * 179.91883 * 17 16 15 19 19 C 1.38481 * 119.82808 * 359.96341 * 17 16 15 20 20 C 1.37920 * 120.24005 * 0.06283 * 19 17 16 21 21 C 1.38931 * 107.96572 * 16.03042 * 15 14 12 22 22 N 1.40195 * 110.94256 * 0.67698 * 21 15 14 23 23 C 1.46906 * 110.99857 * 103.48448 * 22 21 15 24 24 H 1.09000 * 109.47208 * 305.34899 * 1 2 3 25 25 H 1.09003 * 109.47133 * 65.34506 * 1 2 3 26 26 H 1.08995 * 109.47237 * 185.34601 * 1 2 3 27 27 H 0.96994 * 120.00198 * 180.02562 * 7 6 4 28 28 H 1.08999 * 110.74048 * 97.79644 * 14 12 2 29 29 H 1.09003 * 110.73438 * 334.47494 * 14 12 2 30 30 H 1.08001 * 119.96766 * 359.32826 * 16 15 14 31 31 H 1.08006 * 119.87928 * 180.11741 * 19 17 16 32 32 H 1.08004 * 119.88339 * 180.02562 * 20 19 17 33 33 H 1.08998 * 109.47451 * 300.04454 * 23 22 21 34 34 H 1.08999 * 109.47143 * 60.05110 * 23 22 21 35 35 H 1.08998 * 109.46619 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2753 -1.7618 -1.1856 6 6 2.1818 -0.0182 -2.4134 7 7 2.5096 -0.6596 -3.5138 8 14 1.9186 1.8307 -2.4533 9 1 3.1742 2.5180 -2.0578 10 1 1.5381 2.2471 -3.8270 11 1 0.8345 2.1970 -1.5069 12 6 2.0400 -0.7212 1.2492 13 1 1.7362 -1.7680 1.2406 14 6 1.5414 -0.0162 2.5316 15 6 2.7158 -0.1675 3.4779 16 6 2.8123 -0.0228 4.8463 17 6 4.0251 -0.2292 5.4819 18 9 4.1204 -0.0859 6.8219 19 6 5.1402 -0.5819 4.7403 20 6 5.0469 -0.7268 3.3719 21 6 3.8301 -0.5174 2.7254 22 7 3.5095 -0.5982 1.3630 23 6 3.9967 0.5821 0.6367 24 1 -0.3633 0.5946 0.8382 25 1 -0.3633 0.4287 -0.9340 26 1 -0.3633 -1.0231 0.0957 27 1 2.6151 -0.1726 -4.3460 28 1 0.6585 -0.5169 2.9289 29 1 1.3350 1.0365 2.3378 30 1 1.9421 0.2561 5.4220 31 1 6.0861 -0.7449 5.2354 32 1 5.9201 -1.0024 2.7992 33 1 3.5376 1.4793 1.0518 34 1 5.0801 0.6487 0.7367 35 1 3.7343 0.4938 -0.4175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:34 Heat of formation + Delta-G solvation = -20.733559 kcal Electronic energy + Delta-G solvation = -18360.378140 eV Core-core repulsion = 15465.308751 eV Total energy + Delta-G solvation = -2895.069389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83105 -41.92082 -38.27432 -35.40786 -33.73201 -32.98173 -30.61780 -29.03687 -27.10378 -26.71740 -24.52434 -22.63807 -22.25863 -20.40633 -19.08223 -18.11384 -17.62707 -17.41075 -16.77350 -16.49021 -15.85474 -15.47605 -15.11029 -14.64785 -14.42394 -14.25070 -13.96766 -13.87272 -13.78172 -13.56196 -13.14574 -12.88449 -12.50364 -12.37264 -12.32007 -12.18377 -11.86785 -11.68406 -11.15807 -11.02665 -10.63763 -10.14996 -9.93213 -8.71150 -8.21655 -6.20795 0.13966 0.24907 1.34554 1.38372 1.46396 2.37470 2.51934 2.80494 3.15978 3.21395 3.64614 3.82480 4.00276 4.05149 4.23705 4.30750 4.47025 4.52105 4.61630 4.67611 4.69123 4.84036 4.91969 4.98337 4.98769 5.11494 5.18233 5.19658 5.27201 5.42102 5.45536 5.61267 5.76510 5.82237 6.08144 6.35591 6.47494 6.83493 7.39623 8.95735 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039195 B = 0.006216 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.204640 B = 4503.094562 C = 4751.091150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 H 0.038 0.962 4 C -0.485 4.485 5 H 0.030 0.970 6 C 0.018 3.982 7 N -0.951 5.951 8 Si 0.917 3.083 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.238 1.238 12 C 0.100 3.900 13 H 0.074 0.926 14 C -0.100 4.100 15 C -0.124 4.124 16 C -0.121 4.121 17 C 0.066 3.934 18 F -0.144 7.144 19 C -0.128 4.128 20 C -0.095 4.095 21 C 0.069 3.931 22 N -0.497 5.497 23 C 0.025 3.975 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 4.438 16.598 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.012 4.012 3 H 0.056 0.944 4 C -0.523 4.523 5 H 0.048 0.952 6 C -0.178 4.178 7 N -0.592 5.592 8 Si 0.742 3.258 9 H -0.188 1.188 10 H -0.222 1.222 11 H -0.161 1.161 12 C -0.007 4.007 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.141 4.141 17 C 0.047 3.953 18 F -0.122 7.122 19 C -0.147 4.147 20 C -0.115 4.115 21 C -0.028 4.028 22 N -0.213 5.213 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.584 4.035 16.151 16.722 hybrid contribution -0.285 1.006 -0.308 1.090 sum 1.299 5.040 15.842 16.675 Atomic orbital electron populations 1.21943 0.96522 1.00931 1.00083 1.19418 0.93994 0.95624 0.92126 0.94351 1.20984 1.41642 0.96149 0.93565 0.95179 1.25717 0.94936 1.02168 0.95004 1.70056 1.50968 1.37769 1.00385 0.86230 0.80376 0.81620 0.77612 1.18839 1.22191 1.16145 1.22607 0.84202 0.99568 0.94293 0.90824 1.21828 0.96613 1.02351 0.93006 1.21032 0.97290 1.00413 0.93909 1.20436 0.97662 1.02768 0.93191 1.17523 0.95114 1.05505 0.77189 1.91470 1.96917 1.93819 1.30034 1.21083 0.98945 1.01501 0.93189 1.20522 0.96545 1.00865 0.93582 1.20182 0.95138 0.97694 0.89790 1.60023 1.14675 1.39408 1.07191 1.22575 0.99730 0.88925 1.00746 0.92149 0.94648 0.93291 0.92866 0.87782 0.89321 0.83218 0.81934 0.83931 0.95329 0.91292 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.51 71.98 0.61 -4.47 16 2 C 0.01 0.31 0.80 -11.54 -0.01 0.30 16 3 H 0.04 1.60 3.88 -2.39 -0.01 1.59 16 4 C -0.49 -25.80 7.11 25.60 0.18 -25.62 16 5 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 6 C 0.02 1.00 5.16 84.65 0.44 1.44 16 7 N -0.95 -57.86 13.96 21.45 0.30 -57.57 16 8 Si 0.92 41.50 25.44 68.60 1.74 43.25 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.24 -9.76 6.25 99.48 0.62 -9.14 16 12 C 0.10 3.76 2.84 45.27 0.13 3.89 16 13 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 14 C -0.10 -2.92 5.50 30.67 0.17 -2.75 16 15 C -0.12 -3.60 6.23 -19.49 -0.12 -3.72 16 16 C -0.12 -3.03 10.01 22.26 0.22 -2.80 16 17 C 0.07 1.62 7.31 22.38 0.16 1.79 16 18 F -0.14 -3.45 17.27 44.97 0.78 -2.68 16 19 C -0.13 -2.92 10.00 22.25 0.22 -2.70 16 20 C -0.10 -2.55 10.07 22.47 0.23 -2.33 16 21 C 0.07 2.22 5.59 38.24 0.21 2.43 16 22 N -0.50 -18.94 5.22 -689.58 -3.60 -22.54 16 23 C 0.03 0.97 8.08 127.69 1.03 2.00 16 24 H 0.06 1.81 7.37 -2.39 -0.02 1.79 16 25 H 0.03 1.39 6.94 -2.39 -0.02 1.38 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.09 2.48 7.77 -2.39 -0.02 2.46 16 30 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.03 1.00 7.62 -2.39 -0.02 0.98 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 3.75 4.10 -2.39 -0.01 3.74 16 Total: -1.00 -61.68 280.36 3.70 -57.98 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.00 Total: 14.11 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 3.48 Total: -32.55 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -3.30 Total: -80.11 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.74 Total: 43.25 kcal Total: -61.68 3.70 -57.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.245 kcal (2) G-P(sol) polarization free energy of solvation -61.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds