Wall clock time and date at job start Mon Mar 30 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47735 * 2 1 4 4 C 1.50707 * 109.46630 * 119.99961 * 2 1 3 5 5 H 1.07997 * 119.99907 * 120.00218 * 4 2 1 6 6 C 1.37875 * 120.00279 * 299.99649 * 4 2 1 7 7 N 1.31515 * 119.99649 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00102 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46824 * 90.00207 * 8 6 4 10 10 H 1.48499 * 109.47145 * 210.00027 * 8 6 4 11 11 H 1.48500 * 109.46875 * 329.99914 * 8 6 4 12 12 C 1.53001 * 109.47094 * 239.99486 * 2 1 3 13 13 H 1.09002 * 110.69513 * 299.30332 * 12 2 1 14 14 C 1.54600 * 110.93823 * 62.71184 * 12 2 1 15 15 C 1.51571 * 102.85764 * 143.91157 * 14 12 2 16 16 C 1.37951 * 131.52804 * 163.63750 * 15 14 12 17 17 C 1.38471 * 120.06334 * 180.71294 * 16 15 14 18 18 F 1.35101 * 120.08482 * 179.97438 * 17 16 15 19 19 C 1.38485 * 119.83207 * 0.02562 * 17 16 15 20 20 C 1.37926 * 120.23555 * 359.88262 * 19 17 16 21 21 C 1.38934 * 107.97377 * 344.05042 * 15 14 12 22 22 N 1.40202 * 110.93050 * 359.20213 * 21 15 14 23 23 C 1.46897 * 110.99805 * 256.62741 * 22 21 15 24 24 H 1.08995 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46939 * 300.00132 * 1 2 3 26 26 H 1.09000 * 109.46579 * 59.99847 * 1 2 3 27 27 H 0.97005 * 119.99697 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.73279 * 262.25622 * 14 12 2 29 29 H 1.08997 * 110.73513 * 25.56826 * 14 12 2 30 30 H 1.07998 * 119.96466 * 0.68842 * 16 15 14 31 31 H 1.08002 * 119.88030 * 179.85836 * 19 17 16 32 32 H 1.07998 * 119.88277 * 179.97438 * 20 19 17 33 33 H 1.09003 * 109.46832 * 179.97438 * 23 22 21 34 34 H 1.08990 * 109.47499 * 299.93729 * 23 22 21 35 35 H 1.09000 * 109.47102 * 59.94457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0081 9 1 3.6303 -0.5441 4.4120 10 1 1.3443 -0.9490 5.1123 11 1 2.4877 -2.5654 3.7123 12 6 2.0400 -0.7214 -1.2492 13 1 1.6979 -1.7562 -1.2631 14 6 1.6001 0.0191 -2.5331 15 6 2.7896 -0.1665 -3.4539 16 6 2.9234 -0.0101 -4.8179 17 6 4.1402 -0.2621 -5.4290 18 9 4.2717 -0.1096 -6.7649 19 6 5.2218 -0.6719 -4.6673 20 6 5.0915 -0.8273 -3.3031 21 6 3.8709 -0.5716 -2.6812 22 7 3.5156 -0.6555 -1.3275 23 6 4.0318 0.4960 -0.5755 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 0.7081 1.1609 3.4844 28 1 0.7079 -0.4413 -2.9575 29 1 1.4305 1.0764 -2.3299 30 1 2.0783 0.3087 -5.4098 31 1 6.1706 -0.8708 -5.1434 32 1 5.9386 -1.1475 -2.7147 33 1 3.7415 0.4060 0.4713 34 1 5.1189 0.5206 -0.6496 35 1 3.6184 1.4155 -0.9899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:38 Heat of formation + Delta-G solvation = -7.811997 kcal Electronic energy + Delta-G solvation = -18248.563419 eV Core-core repulsion = 15354.054351 eV Total energy + Delta-G solvation = -2894.509068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.71527 -40.51841 -36.83411 -33.74051 -32.17335 -30.80517 -29.31106 -27.37797 -25.26869 -25.13045 -23.02364 -21.36321 -20.98772 -18.80888 -17.00529 -16.59960 -16.21881 -16.06923 -15.44553 -14.77464 -14.39639 -14.05302 -13.84423 -13.24106 -12.86888 -12.61154 -12.46295 -12.42499 -12.07201 -11.66648 -11.38163 -11.02138 -10.89779 -10.71650 -10.69041 -10.57144 -10.29219 -9.95575 -9.29751 -9.04937 -8.79961 -8.70335 -8.38813 -7.34968 -6.04798 -4.09299 1.34051 1.39399 3.28324 3.35985 3.40267 3.70910 4.16814 4.40595 4.42355 4.84587 5.00262 5.24882 5.30652 5.42361 5.57001 5.67361 5.76740 5.99192 6.15303 6.16900 6.23188 6.24620 6.34958 6.47319 6.55479 6.69299 6.83013 6.89576 7.03169 7.04801 7.12075 7.56551 7.65796 7.79327 7.88141 8.08859 8.36876 8.94830 9.54289 11.00777 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042933 B = 0.005707 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.023500 B = 4905.162879 C = 5347.313123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.035 0.965 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.094 3.906 13 H 0.084 0.916 14 C -0.108 4.108 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.066 3.934 18 F -0.147 7.147 19 C -0.139 4.139 20 C -0.096 4.096 21 C 0.098 3.902 22 N -0.482 5.482 23 C 0.023 3.977 24 H 0.027 0.973 25 H 0.085 0.915 26 H 0.009 0.991 27 H 0.260 0.740 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -0.691 -10.870 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.023 3.977 3 H 0.053 0.947 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.013 4.013 13 H 0.102 0.898 14 C -0.146 4.146 15 C -0.118 4.118 16 C -0.144 4.144 17 C 0.047 3.953 18 F -0.126 7.126 19 C -0.159 4.159 20 C -0.116 4.116 21 C 0.000 4.000 22 N -0.197 5.197 23 C -0.121 4.121 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.749 -1.016 -10.448 11.521 hybrid contribution -0.028 0.191 0.166 0.254 sum 4.721 -0.825 -10.282 11.344 Atomic orbital electron populations 1.21797 0.98102 0.99283 1.00379 1.19005 0.92902 0.95785 0.90003 0.94696 1.21109 1.30639 1.12590 0.89845 0.91840 1.24966 0.95074 0.95013 0.98995 1.69885 1.36649 1.22982 1.23405 0.86612 0.78519 0.80267 0.82743 1.20724 1.21420 1.19872 1.22983 0.83467 1.00016 0.94824 0.89780 1.21918 0.95312 1.02382 0.94996 1.21114 0.98238 0.99081 0.93319 1.20277 0.96536 1.03490 0.94114 1.17386 0.95044 1.05741 0.77178 1.91451 1.96563 1.93884 1.30667 1.20793 0.98189 1.03065 0.93804 1.20301 0.96729 1.01476 0.93070 1.20049 0.93589 0.95250 0.91127 1.60173 1.13082 1.41052 1.05430 1.22722 0.97892 0.88865 1.02664 0.95356 0.89601 0.97234 0.93006 0.90141 0.89838 0.85391 0.84901 0.85093 0.86009 0.93295 0.95949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.78 37.16 0.33 -2.74 16 2 C 0.04 0.95 1.23 -91.77 -0.11 0.83 16 3 H 0.04 0.86 6.35 -51.93 -0.33 0.53 16 4 C -0.50 -12.71 6.24 -34.44 -0.21 -12.92 16 5 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.02 11.32 55.43 0.63 -23.39 16 8 Si 0.89 20.48 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.09 1.86 2.78 -66.31 -0.18 1.68 16 13 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.11 -1.85 5.50 -26.61 -0.15 -2.00 16 15 C -0.11 -1.90 6.23 -104.04 -0.65 -2.55 16 16 C -0.12 -1.85 10.01 -39.60 -0.40 -2.25 16 17 C 0.07 0.96 7.31 -39.40 -0.29 0.67 16 18 F -0.15 -2.08 17.27 2.25 0.04 -2.05 16 19 C -0.14 -1.87 10.00 -39.60 -0.40 -2.26 16 20 C -0.10 -1.41 10.07 -39.28 -0.40 -1.80 16 21 C 0.10 1.68 5.59 -83.35 -0.47 1.22 16 22 N -0.48 -9.31 5.19 -169.31 -0.88 -10.18 16 23 C 0.02 0.45 8.08 60.06 0.49 0.93 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.01 0.17 7.37 -51.93 -0.38 -0.21 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 30 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.12 2.66 5.08 -51.93 -0.26 2.40 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.42 7.64 -51.93 -0.40 0.02 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -26.17 284.95 -8.07 -34.24 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.60 Total: 1.35 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.53 Total: -19.71 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: -0.25 Total: -33.57 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.17 -8.07 -34.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.426 kcal (2) G-P(sol) polarization free energy of solvation -26.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds