Wall clock time and date at job start Mon Mar 30 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46847 * 2 1 4 4 C 1.50696 * 109.47341 * 119.99779 * 2 1 3 5 5 H 1.08004 * 119.99792 * 114.79420 * 4 2 1 6 6 C 1.37879 * 120.00002 * 294.79642 * 4 2 1 7 7 N 1.31509 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99925 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47181 * 89.99826 * 8 6 4 10 10 H 1.48501 * 109.47330 * 210.00298 * 8 6 4 11 11 H 1.48506 * 109.47259 * 330.00047 * 8 6 4 12 12 C 1.52999 * 109.47289 * 240.00086 * 2 1 3 13 13 H 1.09003 * 110.69116 * 52.55367 * 12 2 1 14 14 C 1.54589 * 110.94071 * 289.15003 * 12 2 1 15 15 C 1.51578 * 102.87030 * 267.13940 * 14 12 2 16 16 C 1.37935 * 131.51940 * 163.89930 * 15 14 12 17 17 C 1.38482 * 120.05851 * 180.61735 * 16 15 14 18 18 F 1.35104 * 120.08330 * 180.02562 * 17 16 15 19 19 C 1.38481 * 119.83401 * 0.02562 * 17 16 15 20 20 C 1.37922 * 120.23280 * 359.89110 * 19 17 16 21 21 C 1.38932 * 107.97248 * 344.22030 * 15 14 12 22 22 N 1.40198 * 110.92592 * 358.97195 * 21 15 14 23 23 C 1.46905 * 110.99901 * 140.40439 * 22 21 15 24 24 H 1.09008 * 109.46567 * 185.85394 * 1 2 3 25 25 H 1.08998 * 109.46784 * 305.84669 * 1 2 3 26 26 H 1.08998 * 109.47196 * 65.85269 * 1 2 3 27 27 H 0.96996 * 120.00041 * 180.02562 * 7 6 4 28 28 H 1.09003 * 110.73361 * 148.78733 * 14 12 2 29 29 H 1.09005 * 110.73379 * 25.48351 * 14 12 2 30 30 H 1.08001 * 119.97473 * 0.59184 * 16 15 14 31 31 H 1.08002 * 119.88306 * 179.86611 * 19 17 16 32 32 H 1.08006 * 119.88078 * 179.97438 * 20 19 17 33 33 H 1.08993 * 109.47461 * 66.76117 * 23 22 21 34 34 H 1.08994 * 109.47153 * 186.76555 * 23 22 21 35 35 H 1.09003 * 109.46793 * 306.76470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5823 -1.6349 1.1336 6 6 1.7901 -0.1800 2.4799 7 7 1.1202 0.9455 2.5978 8 14 2.4123 -1.0609 4.0051 9 1 3.7757 -0.5745 4.3362 10 1 1.4986 -0.7857 5.1430 11 1 2.4570 -2.5230 3.7487 12 6 2.0401 -0.7212 -1.2492 13 1 1.5840 -0.3050 -2.1475 14 6 1.7778 -2.2418 -1.1552 15 6 3.0660 -2.7702 -0.5562 16 6 3.3697 -3.9762 0.0404 17 6 4.6459 -4.2082 0.5254 18 9 4.9441 -5.3895 1.1094 19 6 5.6157 -3.2264 0.4104 20 6 5.3153 -2.0202 -0.1872 21 6 4.0341 -1.7817 -0.6814 22 7 3.5154 -0.6520 -1.3296 23 6 4.0186 0.5844 -0.7162 24 1 -0.3633 -1.0224 0.1048 25 1 -0.3633 0.6018 0.8330 26 1 -0.3633 0.4204 -0.9377 27 1 0.9500 1.3188 3.4768 28 1 1.6096 -2.6663 -2.1449 29 1 0.9334 -2.4477 -0.4973 30 1 2.6115 -4.7401 0.1297 31 1 6.6106 -3.4057 0.7903 32 1 6.0759 -1.2583 -0.2736 33 1 5.0909 0.6673 -0.8928 34 1 3.5103 1.4418 -1.1572 35 1 3.8278 0.5613 0.3568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:42 Heat of formation + Delta-G solvation = -7.524156 kcal Electronic energy + Delta-G solvation = -19018.650304 eV Core-core repulsion = 16124.153718 eV Total energy + Delta-G solvation = -2894.496586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.35687 -40.50854 -36.47597 -33.53441 -32.24881 -30.66804 -29.08817 -27.38032 -25.25027 -24.80852 -22.93886 -21.29927 -20.77687 -19.04315 -16.65000 -16.44980 -15.97635 -15.79112 -15.10730 -14.82135 -14.08472 -14.03854 -13.77488 -13.17333 -12.70839 -12.43753 -12.31716 -12.06404 -11.84472 -11.41269 -11.09615 -11.04052 -10.91950 -10.85925 -10.65781 -10.34409 -10.29241 -10.04338 -9.77278 -8.97129 -8.76242 -8.42681 -8.30595 -6.89607 -6.06895 -4.10187 1.75422 1.77460 3.27299 3.34928 3.41664 4.00667 4.40560 4.55828 4.75023 5.09989 5.27644 5.30561 5.43439 5.71779 5.77525 5.79431 5.94944 6.14679 6.27969 6.28220 6.34000 6.49530 6.58672 6.64298 6.69415 6.76968 6.80336 6.89726 7.05820 7.09133 7.24911 7.59414 7.62886 7.77341 7.88015 7.98411 8.33364 8.94861 9.55759 11.00711 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.011534 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.034170 B = 2427.077179 C = 3146.359759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.022 3.978 3 H 0.042 0.958 4 C -0.519 4.519 5 H 0.071 0.929 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.878 3.122 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.080 3.920 13 H 0.079 0.921 14 C -0.073 4.073 15 C -0.082 4.082 16 C -0.122 4.122 17 C 0.053 3.947 18 F -0.151 7.151 19 C -0.134 4.134 20 C -0.122 4.122 21 C 0.124 3.876 22 N -0.474 5.474 23 C 0.015 3.985 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.259 0.741 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -4.429 -6.059 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.556 4.556 5 H 0.089 0.911 6 C -0.133 4.133 7 N -0.527 5.527 8 Si 0.706 3.294 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.026 4.026 13 H 0.097 0.903 14 C -0.110 4.110 15 C -0.084 4.084 16 C -0.141 4.141 17 C 0.033 3.967 18 F -0.130 7.130 19 C -0.154 4.154 20 C -0.143 4.143 21 C 0.024 3.976 22 N -0.186 5.186 23 C -0.132 4.132 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.410 -4.224 -6.472 8.898 hybrid contribution 0.162 -0.587 1.873 1.970 sum 4.572 -4.810 -4.599 8.074 Atomic orbital electron populations 1.21727 0.98318 0.99825 0.98960 1.19274 0.93073 0.96527 0.90880 0.94046 1.21459 1.35063 1.08891 0.90225 0.91071 1.24896 0.94921 0.94734 0.98798 1.69919 1.40111 1.19156 1.23509 0.86790 0.78770 0.80649 0.83226 1.20685 1.21311 1.19661 1.23032 0.84358 0.95192 1.00004 0.90305 1.21347 0.95345 0.94898 0.99412 1.20207 0.96224 0.93348 0.98653 1.20167 0.95099 0.97821 1.01029 1.17293 0.94585 0.82727 1.02063 1.91420 1.93884 1.45064 1.82643 1.20639 0.98942 0.93295 1.02501 1.20131 0.95440 0.97209 1.01562 1.19624 0.93389 0.92836 0.91748 1.60886 1.08275 1.01635 1.47841 1.22578 0.98503 0.90506 1.01564 0.95028 0.90876 0.97176 0.93100 0.91266 0.89005 0.85622 0.85435 0.85862 0.92991 0.91682 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.76 37.16 0.33 -2.53 16 2 C 0.02 0.48 1.47 -91.77 -0.14 0.35 16 3 H 0.04 1.02 6.26 -51.93 -0.33 0.69 16 4 C -0.52 -12.94 5.59 -34.44 -0.19 -13.13 16 5 H 0.07 1.80 4.15 -52.48 -0.22 1.58 16 6 C 0.07 1.80 5.33 -17.82 -0.09 1.71 16 7 N -0.89 -24.30 11.77 55.43 0.65 -23.65 16 8 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.08 1.54 3.25 -66.32 -0.22 1.33 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 14 C -0.07 -1.32 6.03 -26.62 -0.16 -1.49 16 15 C -0.08 -1.56 4.08 -104.04 -0.42 -1.99 16 16 C -0.12 -2.24 10.00 -39.60 -0.40 -2.63 16 17 C 0.05 0.97 7.31 -39.40 -0.29 0.68 16 18 F -0.15 -2.69 17.27 2.25 0.04 -2.65 16 19 C -0.13 -2.28 10.00 -39.61 -0.40 -2.67 16 20 C -0.12 -2.15 9.54 -39.28 -0.37 -2.52 16 21 C 0.12 2.38 4.61 -83.35 -0.38 1.99 16 22 N -0.47 -8.99 5.30 -169.32 -0.90 -9.88 16 23 C 0.01 0.27 7.83 60.07 0.47 0.74 16 24 H 0.03 0.67 6.93 -51.92 -0.36 0.31 16 25 H 0.07 1.80 6.64 -51.93 -0.34 1.46 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.75 6.42 -51.93 -0.33 1.42 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.12 1.89 7.57 -52.48 -0.40 1.50 16 33 H 0.05 0.83 7.64 -51.93 -0.40 0.43 16 34 H 0.06 1.14 7.61 -51.93 -0.40 0.74 16 35 H 0.08 1.72 5.75 -51.93 -0.30 1.42 16 LS Contribution 276.83 15.07 4.17 4.17 Total: -1.00 -26.98 276.83 -7.64 -34.62 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.32 Total: 1.33 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.27 Total: -20.16 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.24 Total: -33.53 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.98 -7.64 -34.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.093 kcal (2) G-P(sol) polarization free energy of solvation -26.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds