Wall clock time and date at job start Mon Mar 30 2020 06:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46847 * 2 1 4 4 C 1.50696 * 109.47341 * 119.99779 * 2 1 3 5 5 H 1.08004 * 119.99792 * 114.79420 * 4 2 1 6 6 C 1.37879 * 120.00002 * 294.79642 * 4 2 1 7 7 N 1.31509 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99925 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47181 * 89.99826 * 8 6 4 10 10 H 1.48501 * 109.47330 * 210.00298 * 8 6 4 11 11 H 1.48506 * 109.47259 * 330.00047 * 8 6 4 12 12 C 1.52999 * 109.47289 * 240.00086 * 2 1 3 13 13 H 1.09003 * 110.69116 * 52.55367 * 12 2 1 14 14 C 1.54589 * 110.94071 * 289.15003 * 12 2 1 15 15 C 1.51578 * 102.87030 * 267.13940 * 14 12 2 16 16 C 1.37935 * 131.51940 * 163.89930 * 15 14 12 17 17 C 1.38482 * 120.05851 * 180.61735 * 16 15 14 18 18 F 1.35104 * 120.08330 * 180.02562 * 17 16 15 19 19 C 1.38481 * 119.83401 * 0.02562 * 17 16 15 20 20 C 1.37922 * 120.23280 * 359.89110 * 19 17 16 21 21 C 1.38932 * 107.97248 * 344.22030 * 15 14 12 22 22 N 1.40198 * 110.92592 * 358.97195 * 21 15 14 23 23 C 1.46905 * 110.99901 * 140.40439 * 22 21 15 24 24 H 1.09008 * 109.46567 * 185.85394 * 1 2 3 25 25 H 1.08998 * 109.46784 * 305.84669 * 1 2 3 26 26 H 1.08998 * 109.47196 * 65.85269 * 1 2 3 27 27 H 0.96996 * 120.00041 * 180.02562 * 7 6 4 28 28 H 1.09003 * 110.73361 * 148.78733 * 14 12 2 29 29 H 1.09005 * 110.73379 * 25.48351 * 14 12 2 30 30 H 1.08001 * 119.97473 * 0.59184 * 16 15 14 31 31 H 1.08002 * 119.88306 * 179.86611 * 19 17 16 32 32 H 1.08006 * 119.88078 * 179.97438 * 20 19 17 33 33 H 1.08993 * 109.47461 * 66.76117 * 23 22 21 34 34 H 1.08994 * 109.47153 * 186.76555 * 23 22 21 35 35 H 1.09003 * 109.46793 * 306.76470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5823 -1.6349 1.1336 6 6 1.7901 -0.1800 2.4799 7 7 1.1202 0.9455 2.5978 8 14 2.4123 -1.0609 4.0051 9 1 3.7757 -0.5745 4.3362 10 1 1.4986 -0.7857 5.1430 11 1 2.4570 -2.5230 3.7487 12 6 2.0401 -0.7212 -1.2492 13 1 1.5840 -0.3050 -2.1475 14 6 1.7778 -2.2418 -1.1552 15 6 3.0660 -2.7702 -0.5562 16 6 3.3697 -3.9762 0.0404 17 6 4.6459 -4.2082 0.5254 18 9 4.9441 -5.3895 1.1094 19 6 5.6157 -3.2264 0.4104 20 6 5.3153 -2.0202 -0.1872 21 6 4.0341 -1.7817 -0.6814 22 7 3.5154 -0.6520 -1.3296 23 6 4.0186 0.5844 -0.7162 24 1 -0.3633 -1.0224 0.1048 25 1 -0.3633 0.6018 0.8330 26 1 -0.3633 0.4204 -0.9377 27 1 0.9500 1.3188 3.4768 28 1 1.6096 -2.6663 -2.1449 29 1 0.9334 -2.4477 -0.4973 30 1 2.6115 -4.7401 0.1297 31 1 6.6106 -3.4057 0.7903 32 1 6.0759 -1.2583 -0.2736 33 1 5.0909 0.6673 -0.8928 34 1 3.5103 1.4418 -1.1572 35 1 3.8278 0.5613 0.3568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:41 Heat of formation + Delta-G solvation = -21.736918 kcal Electronic energy + Delta-G solvation = -19019.266616 eV Core-core repulsion = 16124.153718 eV Total energy + Delta-G solvation = -2895.112898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.74817 -41.97162 -37.94801 -35.31807 -33.76069 -32.41106 -30.49471 -28.90268 -27.14172 -26.29770 -24.50069 -22.79653 -22.21433 -20.68819 -18.25404 -18.04173 -17.49020 -17.26641 -16.66670 -16.43002 -15.80443 -15.55352 -15.18226 -14.82194 -14.30440 -13.84100 -13.74910 -13.60407 -13.36054 -13.19978 -12.87918 -12.72082 -12.58159 -12.43730 -12.30496 -12.16048 -11.83712 -11.67223 -11.49090 -10.72569 -10.41350 -10.34802 -9.73728 -8.38269 -8.07546 -6.12119 0.33650 0.39586 1.32710 1.38137 1.45251 2.42314 2.59645 3.11258 3.26754 3.36498 3.73189 3.89683 4.08983 4.29862 4.36070 4.40480 4.51682 4.72288 4.80256 4.85314 4.96104 4.98002 5.03449 5.11667 5.20060 5.23832 5.29285 5.31404 5.40885 5.53419 5.70701 5.78272 5.97304 6.05371 6.18670 6.36633 6.44028 6.99200 7.54229 8.99185 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.011534 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.034170 B = 2427.077179 C = 3146.359759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.023 3.977 3 H 0.019 0.981 4 C -0.506 4.506 5 H 0.070 0.930 6 C 0.025 3.975 7 N -0.915 5.915 8 Si 0.918 3.082 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.081 3.919 13 H 0.098 0.902 14 C -0.069 4.069 15 C -0.100 4.100 16 C -0.132 4.132 17 C 0.042 3.958 18 F -0.151 7.151 19 C -0.132 4.132 20 C -0.125 4.125 21 C 0.102 3.898 22 N -0.470 5.470 23 C 0.021 3.979 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.255 0.745 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -5.198 -7.018 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.004 3.996 3 H 0.037 0.963 4 C -0.544 4.544 5 H 0.088 0.912 6 C -0.173 4.173 7 N -0.556 5.556 8 Si 0.747 3.253 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.201 1.201 12 C -0.025 4.025 13 H 0.116 0.884 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.151 4.151 17 C 0.022 3.978 18 F -0.130 7.130 19 C -0.151 4.151 20 C -0.146 4.146 21 C 0.003 3.997 22 N -0.182 5.182 23 C -0.125 4.125 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.358 -5.009 -7.431 10.441 hybrid contribution -0.081 -0.389 2.146 2.183 sum 5.277 -5.398 -5.285 9.215 Atomic orbital electron populations 1.21590 0.97976 0.99518 0.99021 1.19196 0.93299 0.95385 0.91733 0.96339 1.21726 1.33385 1.08332 0.90947 0.91230 1.25409 0.95779 0.95392 1.00769 1.70016 1.41817 1.20329 1.23429 0.86153 0.78248 0.79487 0.81457 1.20691 1.21476 1.20116 1.22975 0.84909 0.95714 0.98923 0.88403 1.21338 0.94562 0.94060 1.00615 1.20399 0.96717 0.93775 0.99341 1.20386 0.95753 0.98091 1.00903 1.17514 0.94958 0.83101 1.02247 1.91420 1.93866 1.45049 1.82628 1.20982 1.00020 0.92570 1.01534 1.20459 0.95418 0.97943 1.00792 1.19903 0.94270 0.92918 0.92647 1.60965 1.07812 1.01667 1.47782 1.22482 1.00204 0.90695 0.99113 0.94765 0.93998 0.94558 0.93547 0.88550 0.90180 0.84396 0.82583 0.83744 0.90493 0.91236 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.76 71.98 0.63 -4.68 16 2 C 0.02 1.02 1.47 -11.54 -0.02 1.01 16 3 H 0.02 0.91 6.26 -2.39 -0.01 0.90 16 4 C -0.51 -25.09 5.59 25.60 0.14 -24.94 16 5 H 0.07 3.46 4.15 -2.91 -0.01 3.45 16 6 C 0.02 1.32 5.33 84.66 0.45 1.78 16 7 N -0.92 -50.85 11.77 21.45 0.25 -50.60 16 8 Si 0.92 43.65 29.54 68.60 2.03 45.68 16 9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.08 2.97 3.25 45.26 0.15 3.12 16 13 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 14 C -0.07 -2.36 6.03 30.67 0.19 -2.17 16 15 C -0.10 -3.64 4.08 -19.49 -0.08 -3.72 16 16 C -0.13 -4.63 10.00 22.26 0.22 -4.41 16 17 C 0.04 1.43 7.31 22.39 0.16 1.60 16 18 F -0.15 -5.06 17.27 44.97 0.78 -4.28 16 19 C -0.13 -4.12 10.00 22.25 0.22 -3.90 16 20 C -0.13 -4.09 9.54 22.47 0.21 -3.87 16 21 C 0.10 3.72 4.61 38.24 0.18 3.89 16 22 N -0.47 -16.89 5.30 -689.61 -3.65 -20.54 16 23 C 0.02 0.76 7.83 127.69 1.00 1.76 16 24 H 0.03 1.42 6.93 -2.38 -0.02 1.40 16 25 H 0.04 2.07 6.64 -2.39 -0.02 2.05 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.08 2.93 6.42 -2.38 -0.02 2.92 16 30 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.14 3.99 7.57 -2.91 -0.02 3.97 16 33 H 0.08 2.29 7.64 -2.39 -0.02 2.27 16 34 H 0.07 2.36 7.61 -2.39 -0.02 2.34 16 35 H 0.04 1.84 5.75 -2.39 -0.01 1.83 16 Total: -1.00 -56.57 276.83 3.96 -52.61 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.10 Total: 11.68 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.46 Total: -34.55 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -3.40 Total: -71.14 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.78 Total: -4.28 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -56.57 3.96 -52.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.874 kcal (2) G-P(sol) polarization free energy of solvation -56.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds