Wall clock time and date at job start Mon Mar 30 2020 07:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46809 * 111.00041 * 2 1 4 4 C 1.51718 * 111.15026 * 35.62016 * 3 2 1 5 5 C 1.51768 * 113.89535 * 67.50692 * 4 3 2 6 6 H 1.09010 * 109.24012 * 53.46465 * 5 4 3 7 7 C 1.50699 * 109.24512 * 172.90481 * 5 4 3 8 8 H 1.07995 * 120.00067 * 0.02562 * 7 5 4 9 9 C 1.37877 * 119.99591 * 180.02562 * 7 5 4 10 10 N 1.31518 * 120.00346 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99880 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47059 * 59.99874 * 11 9 7 13 13 H 1.48496 * 109.47491 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46968 * 300.00280 * 11 9 7 15 15 C 1.53168 * 110.63610 * 293.16786 * 5 4 3 16 16 C 1.51483 * 108.25087 * 83.22231 * 15 5 4 17 17 C 1.38174 * 119.71972 * 110.56389 * 16 15 5 18 18 C 1.38544 * 119.64332 * 179.97438 * 17 16 15 19 19 F 1.35101 * 119.95812 * 180.02562 * 18 17 16 20 20 C 1.38490 * 120.08864 * 359.76035 * 18 17 16 21 21 C 1.38150 * 120.16779 * 0.51370 * 20 18 17 22 22 C 1.37756 * 119.82615 * 290.53496 * 16 15 5 23 23 H 1.09004 * 109.47056 * 326.88243 * 1 2 3 24 24 H 1.09002 * 109.47159 * 86.87956 * 1 2 3 25 25 H 1.08995 * 109.46850 * 206.87943 * 1 2 3 26 26 H 1.09000 * 109.14642 * 156.05119 * 3 2 1 27 27 H 1.09006 * 109.14562 * 275.18870 * 3 2 1 28 28 H 1.08996 * 108.60128 * 188.65122 * 4 3 2 29 29 H 1.09001 * 108.59966 * 306.36917 * 4 3 2 30 30 H 0.96995 * 119.99609 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.70845 * 202.91106 * 15 5 4 32 32 H 1.08994 * 109.71249 * 323.50471 * 15 5 4 33 33 H 1.08008 * 120.17769 * 359.91922 * 17 16 15 34 34 H 1.07995 * 119.91752 * 180.31448 * 20 18 17 35 35 H 1.07996 * 120.18644 * 179.74982 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3706 0.0000 4 6 1.1175 2.2939 0.8241 5 6 1.1361 1.9940 2.3117 6 1 2.1681 1.9804 2.6625 7 6 0.3765 3.0694 3.0448 8 1 -0.0728 3.8833 2.4953 9 6 0.2552 3.0142 4.4171 10 7 0.8028 2.0233 5.0864 11 14 -0.6870 4.3469 5.3259 12 1 -2.0908 4.3779 4.8425 13 1 -0.6718 4.0584 6.7824 14 1 -0.0479 5.6636 5.0748 15 6 0.4882 0.6357 2.5968 16 6 1.5290 -0.4424 2.3749 17 6 2.0267 -1.1466 3.4545 18 6 2.9782 -2.1326 3.2497 19 9 3.4689 -2.8254 4.3006 20 6 3.4231 -2.4127 1.9684 21 6 2.9282 -1.7035 0.8911 22 6 1.9723 -0.7145 1.0993 23 1 -0.3633 0.8608 0.5615 24 1 -0.3633 0.0559 -1.0262 25 1 -0.3633 -0.9166 0.4646 26 1 3.0018 1.3671 0.4180 27 1 2.0363 1.7377 -1.0255 28 1 1.4528 3.3197 0.6720 29 1 0.0916 2.2101 0.4655 30 1 0.7171 1.9844 6.0518 31 1 0.1403 0.6038 3.6292 32 1 -0.3525 0.4802 1.9206 33 1 1.6766 -0.9289 4.4528 34 1 4.1611 -3.1853 1.8114 35 1 3.2778 -1.9190 -0.1077 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:45 Heat of formation + Delta-G solvation = -9.459639 kcal Electronic energy + Delta-G solvation = -18789.400469 eV Core-core repulsion = 15894.819954 eV Total energy + Delta-G solvation = -2894.580515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84801 -41.73886 -38.09863 -36.04996 -33.47085 -32.51877 -30.75176 -29.29050 -27.45836 -25.93202 -24.40685 -23.38267 -21.56496 -20.54213 -18.46410 -18.19337 -17.64910 -17.49663 -16.73266 -16.54335 -16.41529 -15.30871 -14.98211 -14.76174 -14.37705 -14.23582 -13.93344 -13.70247 -13.43207 -13.21908 -12.86038 -12.80363 -12.64481 -12.58300 -12.17315 -12.07259 -11.74947 -11.37095 -11.04070 -10.89434 -10.38465 -9.76338 -9.43034 -9.16010 -8.10880 -6.26621 0.20212 0.39170 1.40067 1.40463 1.47837 2.40217 2.64613 3.04944 3.15790 3.35610 3.91808 4.00391 4.03678 4.30490 4.36170 4.45305 4.52199 4.57307 4.69870 4.78944 4.87559 4.97640 5.05520 5.08290 5.17917 5.23920 5.26859 5.32574 5.47670 5.57920 5.72470 5.83389 5.92222 6.04155 6.08845 6.34138 6.47885 6.85430 7.42158 8.91220 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.008842 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.908577 B = 3165.896107 C = 4196.204867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.482 5.482 3 C 0.061 3.939 4 C -0.144 4.144 5 C 0.060 3.940 6 H -0.019 1.019 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.015 3.985 10 N -0.908 5.908 11 Si 0.950 3.050 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.094 4.094 16 C -0.069 4.069 17 C -0.157 4.157 18 C 0.075 3.925 19 F -0.151 7.151 20 C -0.154 4.154 21 C -0.065 4.065 22 C 0.057 3.943 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.165 0.835 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -6.564 -9.480 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.202 5.202 3 C -0.066 4.066 4 C -0.183 4.183 5 C 0.041 3.959 6 H -0.001 1.001 7 C -0.573 4.573 8 H 0.074 0.926 9 C -0.184 4.184 10 N -0.547 5.547 11 Si 0.776 3.224 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.131 4.131 16 C -0.071 4.071 17 C -0.177 4.177 18 C 0.055 3.945 19 F -0.130 7.130 20 C -0.173 4.173 21 C -0.084 4.084 22 C -0.037 4.037 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.183 0.817 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.085 -6.864 -9.727 12.086 hybrid contribution -0.626 1.111 2.330 2.656 sum 1.459 -5.753 -7.397 9.484 Atomic orbital electron populations 1.23129 0.86709 1.02342 1.03148 1.60758 1.09014 1.13446 1.37013 1.22000 0.97613 0.86288 1.00658 1.21781 1.00973 0.99587 0.95926 1.18275 0.93964 0.92028 0.91589 1.00055 1.21566 1.34497 1.08946 0.92269 0.92586 1.25704 0.96484 0.97610 0.98608 1.70044 1.45150 1.32070 1.07437 0.85737 0.79498 0.79874 0.77293 1.19423 1.21400 1.19907 1.21426 0.95629 0.92617 1.03476 1.20712 0.98122 0.95344 0.92890 1.21080 0.99261 0.97300 1.00027 1.17956 0.97405 0.94278 0.84813 1.91430 1.86700 1.77955 1.56893 1.21238 1.03251 1.03260 0.89563 1.21157 0.94505 0.92918 0.99819 1.19049 0.98431 0.97621 0.88566 0.91374 0.89206 0.92532 0.92789 0.88091 0.92629 0.90943 0.93212 0.91287 0.90318 0.87108 0.81734 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 7.92 127.69 1.01 0.80 16 2 N -0.48 -15.12 5.02 -722.91 -3.63 -18.75 16 3 C 0.06 1.95 5.89 85.90 0.51 2.45 16 4 C -0.14 -5.52 4.40 29.77 0.13 -5.39 16 5 C 0.06 2.90 1.92 -11.89 -0.02 2.87 16 6 H -0.02 -1.05 7.89 -2.38 -0.02 -1.07 16 7 C -0.53 -28.52 8.52 25.60 0.22 -28.31 16 8 H 0.06 2.91 7.73 -2.91 -0.02 2.88 16 9 C 0.02 0.83 5.15 84.65 0.44 1.26 16 10 N -0.91 -51.64 11.33 21.45 0.24 -51.40 16 11 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C -0.09 -4.33 4.61 30.15 0.14 -4.19 16 16 C -0.07 -2.84 4.80 -19.74 -0.09 -2.93 16 17 C -0.16 -6.61 9.67 22.33 0.22 -6.39 16 18 C 0.07 2.69 7.30 22.40 0.16 2.85 16 19 F -0.15 -5.42 17.27 44.97 0.78 -4.64 16 20 C -0.15 -4.44 10.01 22.31 0.22 -4.21 16 21 C -0.07 -1.88 9.98 22.46 0.22 -1.65 16 22 C 0.06 1.99 4.27 37.85 0.16 2.15 16 23 H 0.07 2.28 2.64 -2.38 -0.01 2.28 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 1.69 7.52 -2.39 -0.02 1.68 16 26 H 0.05 1.86 7.76 -2.39 -0.02 1.84 16 27 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.05 2.12 8.09 -2.39 -0.02 2.10 16 29 H 0.07 2.62 5.59 -2.39 -0.01 2.61 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.07 3.68 5.51 -2.39 -0.01 3.67 16 32 H 0.08 3.31 4.20 -2.39 -0.01 3.30 16 33 H 0.11 5.17 7.98 -2.91 -0.02 5.15 16 34 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -59.33 274.54 3.83 -55.50 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.10 Total: 14.97 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.31 Total: -40.68 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -3.39 Total: -70.14 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.78 Total: -4.64 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -59.33 3.83 -55.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.038 kcal (2) G-P(sol) polarization free energy of solvation -59.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds