Wall clock time and date at job start Mon Mar 30 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39904 * 109.47079 * 2 1 4 4 C 1.50702 * 109.47245 * 120.00117 * 2 1 3 5 5 H 1.07999 * 119.99504 * 120.00057 * 4 2 1 6 6 C 1.37868 * 120.00039 * 300.00061 * 4 2 1 7 7 N 1.31514 * 120.00210 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00137 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47044 * 60.00181 * 8 6 4 10 10 H 1.48498 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47382 * 300.00333 * 8 6 4 12 12 C 1.53001 * 109.47109 * 240.00295 * 2 1 3 13 13 N 1.46901 * 109.47156 * 66.85978 * 12 2 1 14 14 C 1.47910 * 111.00162 * 293.21043 * 13 12 2 15 15 C 1.54599 * 102.79402 * 210.99055 * 14 13 12 16 16 C 1.51574 * 102.83744 * 25.43929 * 15 14 13 17 17 C 1.37920 * 131.56651 * 164.03033 * 16 15 14 18 18 C 1.38300 * 120.07891 * 180.30715 * 17 16 15 19 19 C 1.38301 * 119.88597 * 359.97438 * 18 17 16 20 20 C 1.37909 * 120.26734 * 359.87083 * 19 18 17 21 21 C 1.38967 * 107.95092 * 344.05472 * 16 15 14 22 22 H 1.09003 * 109.46767 * 155.81875 * 1 2 3 23 23 H 1.09003 * 109.47032 * 275.81560 * 1 2 3 24 24 H 1.09002 * 109.47003 * 35.81760 * 1 2 3 25 25 H 0.97006 * 120.00388 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47060 * 306.86089 * 12 2 1 27 27 H 1.08999 * 109.47353 * 186.85822 * 12 2 1 28 28 H 1.09002 * 110.77520 * 92.61062 * 14 13 12 29 29 H 1.09004 * 110.77611 * 329.36698 * 14 13 12 30 30 H 1.08995 * 110.73788 * 143.78335 * 15 14 13 31 31 H 1.09010 * 110.73487 * 267.10299 * 15 14 13 32 32 H 1.08004 * 119.95712 * 0.28268 * 17 16 15 33 33 H 1.08005 * 120.05717 * 179.97438 * 18 17 16 34 34 H 1.08005 * 119.86806 * 179.89352 * 19 18 17 35 35 H 1.07997 * 119.90217 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8271 -0.4200 5.2204 11 1 1.8260 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2493 13 7 1.6901 0.0603 -2.4430 14 6 0.2253 0.0903 -2.6463 15 6 0.0950 0.1817 -4.1841 16 6 1.3884 -0.4419 -4.6694 17 6 1.7659 -0.9202 -5.9067 18 6 3.0279 -1.4565 -6.0870 19 6 3.9114 -1.5119 -5.0244 20 6 3.5401 -1.0321 -3.7859 21 6 2.2705 -0.4882 -3.5966 22 1 -0.3633 -0.9375 -0.4210 23 1 -0.3633 0.1041 1.0224 24 1 -0.3633 0.8333 -0.6014 25 1 0.7090 1.1613 3.4845 26 1 1.5799 -1.7073 -1.3128 27 1 3.1231 -0.8287 -1.1901 28 1 -0.2135 0.9661 -2.1682 29 1 -0.2357 -0.8241 -2.2728 30 1 -0.7644 -0.3906 -4.5332 31 1 0.0237 1.2213 -4.5042 32 1 1.0750 -0.8763 -6.7356 33 1 3.3230 -1.8313 -7.0560 34 1 4.8962 -1.9323 -5.1651 35 1 4.2348 -1.0779 -2.9604 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:09 Heat of formation + Delta-G solvation = -7.135126 kcal Electronic energy + Delta-G solvation = -18426.469900 eV Core-core repulsion = 15531.990184 eV Total energy + Delta-G solvation = -2894.479716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.48805 -40.34411 -36.64863 -33.78070 -32.41743 -30.80545 -28.80752 -28.48226 -25.82023 -24.69154 -22.58812 -21.01513 -20.78657 -19.46645 -16.98308 -16.06487 -15.61002 -15.36338 -15.10128 -14.72033 -14.09116 -13.69055 -13.41039 -13.14019 -12.91066 -12.61168 -12.40851 -12.04947 -11.87695 -11.54484 -11.34711 -11.01571 -10.91313 -10.79553 -10.63413 -10.45373 -10.41117 -10.12967 -9.67263 -8.97280 -8.73120 -8.59710 -8.50808 -7.31077 -6.12769 -4.33104 1.58658 1.64558 3.25248 3.30125 3.32117 3.89204 4.20298 4.33746 4.78927 4.95281 5.15736 5.19294 5.22287 5.41243 5.53784 5.63514 5.76150 5.88066 5.98404 6.01235 6.08314 6.14574 6.20398 6.29059 6.54848 6.58953 6.69397 6.73593 6.81766 6.90195 7.01364 7.32058 7.59163 7.62963 7.77392 7.95108 8.15044 8.69446 9.40883 10.89594 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.006084 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.807374 B = 4600.825146 C = 5061.360360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.248 3.752 3 F -0.222 7.222 4 C -0.559 4.559 5 H 0.064 0.936 6 C 0.078 3.922 7 N -0.866 5.866 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.037 3.963 13 N -0.468 5.468 14 C 0.043 3.957 15 C -0.086 4.086 16 C -0.152 4.152 17 C -0.082 4.082 18 C -0.161 4.161 19 C -0.094 4.094 20 C -0.145 4.145 21 C 0.114 3.886 22 H 0.033 0.967 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.265 0.735 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -4.032 -13.067 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.229 3.771 3 F -0.203 7.203 4 C -0.597 4.597 5 H 0.082 0.918 6 C -0.127 4.127 7 N -0.502 5.502 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.089 4.089 13 N -0.179 5.179 14 C -0.083 4.083 15 C -0.124 4.124 16 C -0.155 4.155 17 C -0.101 4.101 18 C -0.180 4.180 19 C -0.113 4.113 20 C -0.166 4.166 21 C 0.014 3.986 22 H 0.052 0.948 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.407 -3.316 -12.713 13.144 hybrid contribution 0.205 -1.002 0.786 1.290 sum -0.203 -4.318 -11.927 12.686 Atomic orbital electron populations 1.22676 0.97551 0.97872 1.04208 1.18274 0.91306 0.76713 0.90808 1.92750 1.90307 1.39746 1.97475 1.21312 1.34427 1.13759 0.90194 0.91812 1.24986 0.94011 0.94490 0.99261 1.69963 1.34556 1.21653 1.24001 0.86549 0.79494 0.79636 0.81696 1.19938 1.21012 1.20005 1.23153 1.01741 0.94806 0.89190 1.60449 1.08547 1.47084 1.01848 1.23708 0.86945 1.03264 0.94341 1.21383 0.94770 1.00820 0.95403 1.20556 0.96791 1.03732 0.94414 1.20302 0.96250 0.98132 0.95375 1.20858 0.94296 1.04029 0.98808 1.20817 0.99157 0.98977 0.92334 1.20534 0.95302 1.02559 0.98216 1.19967 0.94328 0.92266 0.92010 0.94835 0.89281 0.94322 0.92498 0.93396 0.90443 0.87856 0.91704 0.90567 0.89899 0.86643 0.86406 0.86166 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 7.37 37.16 0.27 -3.58 16 2 C 0.25 6.25 0.96 -91.77 -0.09 6.16 16 3 F -0.22 -6.31 16.15 2.25 0.04 -6.28 16 4 C -0.56 -15.20 8.30 -34.44 -0.29 -15.48 16 5 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 6 C 0.08 2.13 5.10 -17.82 -0.09 2.04 16 7 N -0.87 -24.61 11.11 55.43 0.62 -23.99 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.04 0.79 4.04 -3.82 -0.02 0.78 16 13 N -0.47 -9.20 4.86 -168.92 -0.82 -10.02 16 14 C 0.04 0.73 4.99 -2.43 -0.01 0.72 16 15 C -0.09 -1.22 7.04 -26.61 -0.19 -1.41 16 16 C -0.15 -2.36 6.23 -104.04 -0.65 -3.01 16 17 C -0.08 -1.09 10.03 -39.67 -0.40 -1.49 16 18 C -0.16 -2.02 10.06 -39.54 -0.40 -2.42 16 19 C -0.09 -1.27 10.02 -39.68 -0.40 -1.66 16 20 C -0.14 -2.34 9.51 -39.27 -0.37 -2.72 16 21 C 0.11 2.03 5.97 -83.27 -0.50 1.53 16 22 H 0.03 0.69 6.43 -51.93 -0.33 0.35 16 23 H 0.09 2.32 5.85 -51.93 -0.30 2.02 16 24 H 0.04 0.84 5.51 -51.93 -0.29 0.55 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.05 0.99 7.75 -51.93 -0.40 0.58 16 27 H 0.08 1.68 7.02 -51.93 -0.36 1.31 16 28 H 0.10 1.81 5.94 -51.93 -0.31 1.50 16 29 H 0.06 1.08 6.15 -51.93 -0.32 0.76 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.12 1.92 7.25 -52.49 -0.38 1.54 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -29.95 280.99 -8.43 -38.38 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.35 Total: 2.41 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.12 Total: -20.55 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.20 Total: -34.01 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.04 Total: -6.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.95 -8.43 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.240 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds