Wall clock time and date at job start Mon Mar 30 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39904 * 109.47079 * 2 1 4 4 C 1.50702 * 109.47245 * 120.00117 * 2 1 3 5 5 H 1.07999 * 119.99504 * 120.00057 * 4 2 1 6 6 C 1.37868 * 120.00039 * 300.00061 * 4 2 1 7 7 N 1.31514 * 120.00210 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00137 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47044 * 60.00181 * 8 6 4 10 10 H 1.48498 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47382 * 300.00333 * 8 6 4 12 12 C 1.53001 * 109.47109 * 240.00295 * 2 1 3 13 13 N 1.46901 * 109.47156 * 66.85978 * 12 2 1 14 14 C 1.47910 * 111.00162 * 293.21043 * 13 12 2 15 15 C 1.54599 * 102.79402 * 210.99055 * 14 13 12 16 16 C 1.51574 * 102.83744 * 25.43929 * 15 14 13 17 17 C 1.37920 * 131.56651 * 164.03033 * 16 15 14 18 18 C 1.38300 * 120.07891 * 180.30715 * 17 16 15 19 19 C 1.38301 * 119.88597 * 359.97438 * 18 17 16 20 20 C 1.37909 * 120.26734 * 359.87083 * 19 18 17 21 21 C 1.38967 * 107.95092 * 344.05472 * 16 15 14 22 22 H 1.09003 * 109.46767 * 155.81875 * 1 2 3 23 23 H 1.09003 * 109.47032 * 275.81560 * 1 2 3 24 24 H 1.09002 * 109.47003 * 35.81760 * 1 2 3 25 25 H 0.97006 * 120.00388 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47060 * 306.86089 * 12 2 1 27 27 H 1.08999 * 109.47353 * 186.85822 * 12 2 1 28 28 H 1.09002 * 110.77520 * 92.61062 * 14 13 12 29 29 H 1.09004 * 110.77611 * 329.36698 * 14 13 12 30 30 H 1.08995 * 110.73788 * 143.78335 * 15 14 13 31 31 H 1.09010 * 110.73487 * 267.10299 * 15 14 13 32 32 H 1.08004 * 119.95712 * 0.28268 * 17 16 15 33 33 H 1.08005 * 120.05717 * 179.97438 * 18 17 16 34 34 H 1.08005 * 119.86806 * 179.89352 * 19 18 17 35 35 H 1.07997 * 119.90217 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8271 -0.4200 5.2204 11 1 1.8260 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2493 13 7 1.6901 0.0603 -2.4430 14 6 0.2253 0.0903 -2.6463 15 6 0.0950 0.1817 -4.1841 16 6 1.3884 -0.4419 -4.6694 17 6 1.7659 -0.9202 -5.9067 18 6 3.0279 -1.4565 -6.0870 19 6 3.9114 -1.5119 -5.0244 20 6 3.5401 -1.0321 -3.7859 21 6 2.2705 -0.4882 -3.5966 22 1 -0.3633 -0.9375 -0.4210 23 1 -0.3633 0.1041 1.0224 24 1 -0.3633 0.8333 -0.6014 25 1 0.7090 1.1613 3.4845 26 1 1.5799 -1.7073 -1.3128 27 1 3.1231 -0.8287 -1.1901 28 1 -0.2135 0.9661 -2.1682 29 1 -0.2357 -0.8241 -2.2728 30 1 -0.7644 -0.3906 -4.5332 31 1 0.0237 1.2213 -4.5042 32 1 1.0750 -0.8763 -6.7356 33 1 3.3230 -1.8313 -7.0560 34 1 4.8962 -1.9323 -5.1651 35 1 4.2348 -1.0779 -2.9604 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:09 Heat of formation + Delta-G solvation = -24.110802 kcal Electronic energy + Delta-G solvation = -18427.206021 eV Core-core repulsion = 15531.990184 eV Total energy + Delta-G solvation = -2895.215837 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.61206 -41.58254 -37.92074 -35.62632 -33.90306 -32.38977 -30.05270 -29.85479 -27.64463 -26.42979 -23.81460 -22.26313 -22.11303 -21.18149 -18.86194 -17.44834 -17.07184 -16.85511 -16.50068 -16.25019 -15.64804 -15.33246 -15.26600 -14.64204 -14.24260 -14.03599 -13.76298 -13.57634 -13.46337 -13.11380 -12.86515 -12.73656 -12.55766 -12.50706 -12.25574 -12.12803 -11.86501 -11.71367 -11.17876 -10.88526 -10.62464 -10.49123 -9.68364 -8.59397 -8.19729 -6.48084 0.48863 0.51140 1.39876 1.42314 1.50086 2.34855 2.71476 2.99859 3.07161 3.61351 3.73190 4.04139 4.12131 4.21049 4.24387 4.29704 4.40329 4.52056 4.58243 4.65633 4.70796 4.75712 4.90635 4.97521 5.07172 5.07705 5.12735 5.42668 5.51324 5.58591 5.65905 5.77419 5.84615 5.94264 5.98781 6.22837 6.35477 6.59437 7.29927 8.82004 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.006084 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.807374 B = 4600.825146 C = 5061.360360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.231 3.769 3 F -0.246 7.246 4 C -0.582 4.582 5 H 0.064 0.936 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.055 3.945 13 N -0.489 5.489 14 C 0.038 3.962 15 C -0.076 4.076 16 C -0.159 4.159 17 C -0.082 4.082 18 C -0.149 4.149 19 C -0.095 4.095 20 C -0.165 4.165 21 C 0.074 3.926 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.266 0.734 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -5.358 -15.205 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.212 3.788 3 F -0.227 7.227 4 C -0.620 4.620 5 H 0.082 0.918 6 C -0.174 4.174 7 N -0.533 5.533 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.187 1.187 12 C -0.072 4.072 13 N -0.202 5.202 14 C -0.087 4.087 15 C -0.114 4.114 16 C -0.162 4.162 17 C -0.100 4.100 18 C -0.168 4.168 19 C -0.114 4.114 20 C -0.186 4.186 21 C -0.024 4.024 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.414 -4.651 -14.880 15.595 hybrid contribution 0.255 -0.608 1.328 1.483 sum -0.159 -5.258 -13.552 14.537 Atomic orbital electron populations 1.22501 0.96346 0.99475 1.02599 1.18579 0.92408 0.75661 0.92124 1.92688 1.90723 1.41610 1.97661 1.21704 1.34658 1.14093 0.91521 0.91785 1.25825 0.94053 0.95176 1.02301 1.70097 1.35529 1.22983 1.24660 0.85514 0.78776 0.78932 0.77850 1.19776 1.20499 1.18749 1.22744 1.00682 0.94613 0.89126 1.60441 1.10095 1.47763 1.01865 1.23690 0.85668 1.02535 0.96820 1.21362 0.95398 1.01773 0.92826 1.20829 0.96736 1.03871 0.94764 1.20727 0.97187 0.96856 0.95269 1.21352 0.93522 1.02034 0.99884 1.21168 1.00667 0.98127 0.91409 1.20709 0.94918 1.03645 0.99366 1.20165 0.95566 0.94753 0.91958 0.92696 0.92227 0.93300 0.92471 0.93106 0.91754 0.89121 0.91798 0.87722 0.89115 0.83400 0.82722 0.83501 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.23 7.37 71.98 0.53 -6.70 16 2 C 0.23 12.00 0.96 -11.54 -0.01 11.99 16 3 F -0.25 -14.53 16.15 44.97 0.73 -13.81 16 4 C -0.58 -32.41 8.30 25.60 0.21 -32.20 16 5 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 6 C 0.03 1.61 5.10 84.65 0.43 2.05 16 7 N -0.90 -52.15 11.11 21.44 0.24 -51.91 16 8 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 C 0.05 2.44 4.04 86.30 0.35 2.79 16 13 N -0.49 -19.56 4.86 -688.35 -3.34 -22.90 16 14 C 0.04 1.29 4.99 86.65 0.43 1.72 16 15 C -0.08 -2.01 7.04 30.67 0.22 -1.80 16 16 C -0.16 -4.61 6.23 -19.49 -0.12 -4.74 16 17 C -0.08 -1.87 10.03 22.21 0.22 -1.65 16 18 C -0.15 -3.13 10.06 22.30 0.22 -2.91 16 19 C -0.10 -2.33 10.02 22.21 0.22 -2.10 16 20 C -0.17 -5.30 9.51 22.47 0.21 -5.09 16 21 C 0.07 2.61 5.97 38.24 0.23 2.84 16 22 H 0.05 2.30 6.43 -2.39 -0.02 2.28 16 23 H 0.06 3.19 5.85 -2.39 -0.01 3.18 16 24 H 0.05 2.18 5.51 -2.39 -0.01 2.17 16 25 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 26 H 0.05 2.15 7.75 -2.39 -0.02 2.13 16 27 H 0.06 2.93 7.02 -2.39 -0.02 2.91 16 28 H 0.09 3.22 5.94 -2.39 -0.01 3.21 16 29 H 0.06 2.11 6.15 -2.38 -0.01 2.10 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.11 3.60 7.25 -2.91 -0.02 3.58 16 Total: -1.00 -66.05 280.99 3.89 -62.16 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.09 Total: 17.07 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.15 Total: -35.80 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -3.10 Total: -74.82 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 0.73 Total: -13.81 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.05 3.89 -62.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.053 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds