Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39903 * 109.46991 * 2 1 4 4 C 1.50701 * 109.47182 * 240.00424 * 2 1 3 5 5 H 1.08004 * 120.00017 * 239.99570 * 4 2 1 6 6 C 1.37880 * 120.00160 * 59.99719 * 4 2 1 7 7 N 1.31517 * 119.99456 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47441 * 59.99718 * 8 6 4 10 10 H 1.48506 * 109.47266 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47138 * 299.99420 * 8 6 4 12 12 C 1.53001 * 109.47737 * 120.00029 * 2 1 3 13 13 N 1.46904 * 109.46946 * 315.86747 * 12 2 1 14 14 C 1.47908 * 110.99741 * 315.72049 * 13 12 2 15 15 C 1.54601 * 102.62403 * 149.18469 * 14 13 12 16 16 C 1.51578 * 102.84651 * 334.52665 * 15 14 13 17 17 C 1.37921 * 131.55762 * 196.07515 * 16 15 14 18 18 C 1.38304 * 120.07612 * 179.34539 * 17 16 15 19 19 C 1.38303 * 119.89025 * 359.97438 * 18 17 16 20 20 C 1.37914 * 120.26138 * 0.15672 * 19 18 17 21 21 C 1.38958 * 107.95736 * 15.74246 * 16 15 14 22 22 H 1.08997 * 109.47015 * 309.14483 * 1 2 3 23 23 H 1.09000 * 109.47376 * 69.14933 * 1 2 3 24 24 H 1.09005 * 109.46680 * 189.14912 * 1 2 3 25 25 H 0.97004 * 119.99627 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47614 * 195.86128 * 12 2 1 27 27 H 1.08999 * 109.46606 * 75.86136 * 12 2 1 28 28 H 1.09007 * 110.78312 * 30.90098 * 14 13 12 29 29 H 1.08998 * 110.94145 * 267.54470 * 14 13 12 30 30 H 1.08998 * 110.73766 * 216.18514 * 15 14 13 31 31 H 1.08999 * 110.73507 * 92.86425 * 15 14 13 32 32 H 1.07998 * 119.96705 * 359.36665 * 17 16 15 33 33 H 1.08001 * 120.05731 * 179.97438 * 18 17 16 34 34 H 1.07992 * 119.87307 * 180.17281 * 19 18 17 35 35 H 1.07999 * 119.90756 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.2662 -0.2826 2.4182 14 6 1.0861 1.1855 2.4141 15 6 -0.2801 1.3603 3.1162 16 6 -0.9694 0.0375 2.8464 17 6 -2.2917 -0.3419 2.9446 18 6 -2.6683 -1.6327 2.6207 19 6 -1.7166 -2.5427 2.1975 20 6 -0.3926 -2.1690 2.1002 21 6 -0.0045 -0.8709 2.4284 22 1 -0.3633 0.6487 0.7970 23 1 -0.3634 0.3658 -0.9603 24 1 -0.3633 -1.0147 0.1634 25 1 0.7088 1.1616 -3.4843 26 1 3.0932 -0.4845 1.4009 27 1 1.9246 -1.7973 1.1200 28 1 1.0484 1.5677 1.3939 29 1 1.8775 1.6767 2.9803 30 1 -0.8392 2.1843 2.6730 31 1 -0.1469 1.5147 4.1869 32 1 -3.0341 0.3697 3.2744 33 1 -3.7038 -1.9296 2.6981 34 1 -2.0114 -3.5497 1.9420 35 1 0.3457 -2.8841 1.7687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = 9.339994 kcal Electronic energy + Delta-G solvation = -19200.812012 eV Core-core repulsion = 16307.046710 eV Total energy + Delta-G solvation = -2893.765302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.20536 -40.50471 -36.36181 -33.72881 -32.33744 -30.11693 -28.92876 -28.32782 -25.75439 -24.64099 -22.47716 -20.99142 -20.75560 -19.36242 -16.89701 -16.31374 -15.57480 -15.22494 -14.95116 -14.57556 -14.05584 -13.78839 -13.59475 -13.18887 -12.82249 -12.48912 -12.04402 -11.80078 -11.61787 -11.27447 -11.07502 -10.92159 -10.80593 -10.69706 -10.66213 -10.49756 -10.39423 -10.23615 -9.88281 -9.02980 -8.75598 -8.59205 -8.29757 -6.99693 -6.12681 -4.36090 1.81218 1.86141 3.23257 3.28054 3.30078 4.06794 4.28490 4.48130 4.98494 5.11612 5.15824 5.39472 5.41341 5.68544 5.71218 5.84416 5.91657 5.98503 5.99999 6.22582 6.26799 6.31543 6.38295 6.58443 6.67397 6.72628 6.79557 6.89540 6.94537 7.00080 7.16925 7.46415 7.55894 7.67116 7.74877 7.95199 8.08215 8.65662 9.37936 10.85971 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027606 B = 0.008374 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.021151 B = 3342.758482 C = 3749.749487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.215 3.785 3 F -0.221 7.221 4 C -0.556 4.556 5 H 0.065 0.935 6 C 0.079 3.921 7 N -0.867 5.867 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.030 3.970 13 N -0.480 5.480 14 C -0.002 4.002 15 C -0.082 4.082 16 C -0.148 4.148 17 C -0.083 4.083 18 C -0.161 4.161 19 C -0.095 4.095 20 C -0.143 4.143 21 C 0.136 3.864 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.265 0.735 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -2.226 8.731 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.196 3.804 3 F -0.201 7.201 4 C -0.594 4.594 5 H 0.083 0.917 6 C -0.127 4.127 7 N -0.503 5.503 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.096 4.096 13 N -0.192 5.192 14 C -0.127 4.127 15 C -0.119 4.119 16 C -0.151 4.151 17 C -0.102 4.102 18 C -0.180 4.180 19 C -0.114 4.114 20 C -0.164 4.164 21 C 0.036 3.964 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.172 -2.163 9.031 10.181 hybrid contribution 0.035 -0.249 -1.450 1.472 sum -4.136 -2.412 7.581 8.967 Atomic orbital electron populations 1.22883 0.96716 1.00453 1.03680 1.18963 0.92080 0.76083 0.93264 1.92526 1.90144 1.40819 1.96652 1.21256 1.34344 1.13750 0.90053 0.91659 1.25011 0.93888 0.94453 0.99358 1.69917 1.34537 1.21792 1.24025 0.86542 0.79430 0.79732 0.81657 1.19941 1.21036 1.19931 1.23129 0.97792 1.01125 0.87586 1.60690 1.12232 1.07341 1.38919 1.24287 0.96092 0.86687 1.05646 1.21271 0.95397 0.94751 1.00472 1.20452 0.93404 0.96050 1.05219 1.20254 0.94097 0.96047 0.99796 1.20792 0.98923 0.93765 1.04542 1.20747 0.92464 0.99143 0.99010 1.20411 0.96431 0.94867 1.04710 1.19600 0.89104 0.93821 0.93830 0.94221 0.89042 0.92998 0.92485 0.90426 0.89806 0.85853 0.90122 0.90633 0.90709 0.86871 0.86628 0.86380 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 6.98 37.16 0.26 -4.07 16 2 C 0.22 5.31 0.76 -91.77 -0.07 5.24 16 3 F -0.22 -5.85 13.56 2.25 0.03 -5.82 16 4 C -0.56 -14.94 8.24 -34.44 -0.28 -15.22 16 5 H 0.07 1.70 7.74 -52.48 -0.41 1.29 16 6 C 0.08 2.13 5.23 -17.82 -0.09 2.04 16 7 N -0.87 -24.47 10.96 55.43 0.61 -23.86 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.03 0.63 5.18 -3.82 -0.02 0.61 16 13 N -0.48 -9.35 5.29 -169.01 -0.89 -10.25 16 14 C 0.00 -0.04 5.82 -2.43 -0.01 -0.06 16 15 C -0.08 -1.32 6.62 -26.61 -0.18 -1.49 16 16 C -0.15 -2.59 4.91 -104.04 -0.51 -3.10 16 17 C -0.08 -1.29 10.03 -39.67 -0.40 -1.69 16 18 C -0.16 -2.37 10.06 -39.53 -0.40 -2.77 16 19 C -0.09 -1.46 10.02 -39.68 -0.40 -1.86 16 20 C -0.14 -2.52 7.62 -39.26 -0.30 -2.82 16 21 C 0.14 2.56 3.65 -83.41 -0.30 2.25 16 22 H 0.04 0.89 3.39 -51.93 -0.18 0.71 16 23 H 0.09 2.48 5.88 -51.93 -0.31 2.17 16 24 H 0.05 1.21 5.50 -51.93 -0.29 0.92 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 27 H 0.08 1.72 6.52 -51.93 -0.34 1.38 16 28 H 0.12 2.65 3.19 -51.92 -0.17 2.49 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 2.00 7.10 -52.49 -0.37 1.63 16 LS Contribution 270.18 15.07 4.07 4.07 Total: -1.00 -28.84 270.18 -8.06 -36.89 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.14 Total: 6.10 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.71 Total: -22.94 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.29 Total: -34.10 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.03 Total: -5.82 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.84 -8.06 -36.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.233 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds