Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39903 * 109.46991 * 2 1 4 4 C 1.50701 * 109.47182 * 240.00424 * 2 1 3 5 5 H 1.08004 * 120.00017 * 239.99570 * 4 2 1 6 6 C 1.37880 * 120.00160 * 59.99719 * 4 2 1 7 7 N 1.31517 * 119.99456 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47441 * 59.99718 * 8 6 4 10 10 H 1.48506 * 109.47266 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47138 * 299.99420 * 8 6 4 12 12 C 1.53001 * 109.47737 * 120.00029 * 2 1 3 13 13 N 1.46904 * 109.46946 * 315.86747 * 12 2 1 14 14 C 1.47908 * 110.99741 * 315.72049 * 13 12 2 15 15 C 1.54601 * 102.62403 * 149.18469 * 14 13 12 16 16 C 1.51578 * 102.84651 * 334.52665 * 15 14 13 17 17 C 1.37921 * 131.55762 * 196.07515 * 16 15 14 18 18 C 1.38304 * 120.07612 * 179.34539 * 17 16 15 19 19 C 1.38303 * 119.89025 * 359.97438 * 18 17 16 20 20 C 1.37914 * 120.26138 * 0.15672 * 19 18 17 21 21 C 1.38958 * 107.95736 * 15.74246 * 16 15 14 22 22 H 1.08997 * 109.47015 * 309.14483 * 1 2 3 23 23 H 1.09000 * 109.47376 * 69.14933 * 1 2 3 24 24 H 1.09005 * 109.46680 * 189.14912 * 1 2 3 25 25 H 0.97004 * 119.99627 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47614 * 195.86128 * 12 2 1 27 27 H 1.08999 * 109.46606 * 75.86136 * 12 2 1 28 28 H 1.09007 * 110.78312 * 30.90098 * 14 13 12 29 29 H 1.08998 * 110.94145 * 267.54470 * 14 13 12 30 30 H 1.08998 * 110.73766 * 216.18514 * 15 14 13 31 31 H 1.08999 * 110.73507 * 92.86425 * 15 14 13 32 32 H 1.07998 * 119.96705 * 359.36665 * 17 16 15 33 33 H 1.08001 * 120.05731 * 179.97438 * 18 17 16 34 34 H 1.07992 * 119.87307 * 180.17281 * 19 18 17 35 35 H 1.07999 * 119.90756 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.2662 -0.2826 2.4182 14 6 1.0861 1.1855 2.4141 15 6 -0.2801 1.3603 3.1162 16 6 -0.9694 0.0375 2.8464 17 6 -2.2917 -0.3419 2.9446 18 6 -2.6683 -1.6327 2.6207 19 6 -1.7166 -2.5427 2.1975 20 6 -0.3926 -2.1690 2.1002 21 6 -0.0045 -0.8709 2.4284 22 1 -0.3633 0.6487 0.7970 23 1 -0.3634 0.3658 -0.9603 24 1 -0.3633 -1.0147 0.1634 25 1 0.7088 1.1616 -3.4843 26 1 3.0932 -0.4845 1.4009 27 1 1.9246 -1.7973 1.1200 28 1 1.0484 1.5677 1.3939 29 1 1.8775 1.6767 2.9803 30 1 -0.8392 2.1843 2.6730 31 1 -0.1469 1.5147 4.1869 32 1 -3.0341 0.3697 3.2744 33 1 -3.7038 -1.9296 2.6981 34 1 -2.0114 -3.5497 1.9420 35 1 0.3457 -2.8841 1.7687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = -6.999967 kcal Electronic energy + Delta-G solvation = -19201.520566 eV Core-core repulsion = 16307.046710 eV Total energy + Delta-G solvation = -2894.473856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.19277 -41.89176 -37.70999 -35.58185 -33.93265 -31.73899 -30.41858 -29.66317 -27.65444 -26.38267 -23.80447 -22.50592 -22.08768 -21.04541 -18.87603 -17.77543 -17.10266 -16.83796 -16.41973 -16.14294 -15.80658 -15.48171 -15.20938 -14.68581 -14.31514 -14.06798 -13.47764 -13.38412 -13.12241 -13.06870 -12.79445 -12.60223 -12.44737 -12.33932 -12.25428 -12.19617 -12.13366 -11.70562 -11.54695 -10.92582 -10.63263 -10.36651 -9.56133 -8.51778 -8.10156 -6.48308 0.55759 0.58408 1.39048 1.40687 1.48447 2.34404 2.76013 3.04859 3.12929 3.68736 3.79084 4.10636 4.12911 4.25532 4.31425 4.41139 4.49395 4.52416 4.62358 4.73542 4.82768 4.83930 4.95553 5.01088 5.10263 5.11067 5.20410 5.47685 5.50856 5.62871 5.69289 5.72642 5.87383 5.90355 6.01593 6.17010 6.41634 6.58173 7.29290 8.80132 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027606 B = 0.008374 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.021151 B = 3342.758482 C = 3749.749487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.206 3.794 3 F -0.236 7.236 4 C -0.578 4.578 5 H 0.067 0.933 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.041 3.959 13 N -0.479 5.479 14 C -0.007 4.007 15 C -0.075 4.075 16 C -0.162 4.162 17 C -0.089 4.089 18 C -0.154 4.154 19 C -0.099 4.099 20 C -0.161 4.161 21 C 0.101 3.899 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.265 0.735 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 -3.099 9.422 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.187 3.813 3 F -0.217 7.217 4 C -0.616 4.616 5 H 0.085 0.915 6 C -0.173 4.173 7 N -0.533 5.533 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.195 1.195 12 C -0.086 4.086 13 N -0.192 5.192 14 C -0.132 4.132 15 C -0.112 4.112 16 C -0.165 4.165 17 C -0.107 4.107 18 C -0.172 4.172 19 C -0.118 4.118 20 C -0.181 4.181 21 C 0.003 3.997 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.432 -3.047 9.739 11.560 hybrid contribution 0.343 0.004 -1.613 1.649 sum -5.089 -3.043 8.126 10.060 Atomic orbital electron populations 1.22672 0.96436 1.00636 1.02068 1.19142 0.92401 0.75508 0.94271 1.92504 1.90387 1.41902 1.96912 1.21672 1.34434 1.14086 0.91365 0.91525 1.25826 0.94006 0.95145 1.02330 1.70057 1.35571 1.23118 1.24550 0.85549 0.78896 0.78900 0.77966 1.18959 1.20715 1.19523 1.22884 0.97871 1.00719 0.87111 1.60788 1.13019 1.07717 1.37640 1.24210 0.98265 0.86367 1.04328 1.21276 0.93738 0.94658 1.01566 1.20747 0.94145 0.96187 1.05404 1.20666 0.93842 0.97115 0.99110 1.21264 1.00451 0.93142 1.02379 1.21132 0.91649 1.00724 0.98257 1.20636 0.97635 0.94607 1.05259 1.19819 0.89119 0.94780 0.96007 0.92905 0.92421 0.92705 0.92570 0.90688 0.89593 0.88937 0.88922 0.89728 0.88485 0.84132 0.83223 0.83717 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 6.98 71.98 0.50 -7.34 16 2 C 0.21 10.35 0.76 -11.54 -0.01 10.34 16 3 F -0.24 -12.88 13.56 44.97 0.61 -12.27 16 4 C -0.58 -31.47 8.24 25.60 0.21 -31.26 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.03 1.62 5.23 84.65 0.44 2.06 16 7 N -0.90 -51.54 10.96 21.45 0.24 -51.30 16 8 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 9 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.04 1.76 5.18 86.30 0.45 2.21 16 13 N -0.48 -18.59 5.29 -688.64 -3.65 -22.23 16 14 C -0.01 -0.24 5.82 86.65 0.50 0.26 16 15 C -0.08 -2.31 6.62 30.67 0.20 -2.10 16 16 C -0.16 -5.37 4.91 -19.49 -0.10 -5.46 16 17 C -0.09 -2.49 10.03 22.21 0.22 -2.27 16 18 C -0.15 -3.97 10.06 22.30 0.22 -3.75 16 19 C -0.10 -2.80 10.02 22.21 0.22 -2.58 16 20 C -0.16 -5.49 7.62 22.48 0.17 -5.32 16 21 C 0.10 3.73 3.65 38.29 0.14 3.86 16 22 H 0.05 2.39 3.39 -2.39 -0.01 2.38 16 23 H 0.06 3.19 5.88 -2.39 -0.01 3.18 16 24 H 0.05 2.57 5.50 -2.38 -0.01 2.56 16 25 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.09 3.58 6.52 -2.39 -0.02 3.56 16 28 H 0.09 4.05 3.19 -2.38 -0.01 4.04 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.11 3.86 7.10 -2.91 -0.02 3.84 16 Total: -1.00 -62.06 270.18 3.51 -58.55 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 1.10 Total: 23.76 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.19 Total: -41.34 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -3.41 Total: -73.54 kcal Atomic # 9 Polarization: -12.88 SS G_CDS: 0.61 Total: -12.27 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -62.06 3.51 -58.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.549 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds