Wall clock time and date at job start Mon Mar 30 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39895 * 109.47069 * 2 1 4 4 C 1.50700 * 109.46901 * 120.00279 * 2 1 3 5 5 H 1.08003 * 120.00123 * 119.99786 * 4 2 1 6 6 C 1.37876 * 120.00082 * 299.99809 * 4 2 1 7 7 N 1.31515 * 119.99999 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00138 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47249 * 90.00050 * 8 6 4 10 10 H 1.48500 * 109.47044 * 210.00219 * 8 6 4 11 11 H 1.48504 * 109.46952 * 329.99960 * 8 6 4 12 12 C 1.53001 * 109.47229 * 240.00113 * 2 1 3 13 13 N 1.46894 * 109.47421 * 175.93623 * 12 2 1 14 14 C 1.48910 * 110.99889 * 276.87159 * 13 12 2 15 15 C 1.51547 * 104.09877 * 205.78776 * 14 13 12 16 16 C 1.37983 * 132.19225 * 202.84787 * 15 14 13 17 17 C 1.38283 * 119.94060 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.03602 * 0.02562 * 17 16 15 19 19 C 1.38283 * 120.04194 * 359.97438 * 18 17 16 20 20 C 1.37986 * 119.93455 * 0.02562 * 19 18 17 21 21 C 1.48909 * 111.00545 * 164.33977 * 13 12 2 22 22 H 1.09005 * 109.46754 * 65.49873 * 1 2 3 23 23 H 1.08997 * 109.47152 * 305.50131 * 1 2 3 24 24 H 1.09006 * 109.47439 * 185.49186 * 1 2 3 25 25 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47094 * 295.93494 * 12 2 1 27 27 H 1.09004 * 109.47314 * 55.93039 * 12 2 1 28 28 H 1.09001 * 110.50629 * 324.44386 * 14 13 12 29 29 H 1.08998 * 110.51069 * 87.13624 * 14 13 12 30 30 H 1.08002 * 120.02871 * 0.04971 * 16 15 14 31 31 H 1.07998 * 119.97985 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.98185 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.03345 * 179.97438 * 19 18 17 34 34 H 1.08999 * 110.50764 * 272.86617 * 21 13 12 35 35 H 1.09002 * 110.49921 * 35.41383 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5442 4.4119 10 1 1.3443 -0.9492 5.1122 11 1 2.4878 -2.5655 3.7121 12 6 2.0400 -0.7212 -1.2493 13 7 3.5057 -0.6368 -1.2994 14 6 3.9458 0.6564 -1.8921 15 6 5.3145 0.3521 -2.4671 16 6 6.3924 1.1584 -2.7703 17 6 7.5436 0.6023 -3.2973 18 6 7.6144 -0.7602 -3.5209 19 6 6.5343 -1.5686 -3.2172 20 6 5.3855 -1.0140 -2.6913 21 6 4.0643 -1.6223 -2.2658 22 1 -0.3633 0.4262 -0.9352 23 1 -0.3633 0.5968 0.8366 24 1 -0.3634 -1.0230 0.0984 25 1 0.7081 1.1607 3.4844 26 1 1.7374 -1.7678 -1.2136 27 1 1.6184 -0.2512 -2.1378 28 1 3.2608 0.9676 -2.6809 29 1 4.0173 1.4247 -1.1223 30 1 6.3372 2.2228 -2.5957 31 1 8.3875 1.2329 -3.5352 32 1 8.5138 -1.1936 -3.9330 33 1 6.5896 -2.6329 -3.3923 34 1 4.2258 -2.5845 -1.7798 35 1 3.4001 -1.7353 -3.1227 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261355496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:19 Heat of formation + Delta-G solvation = -25.386812 kcal Electronic energy + Delta-G solvation = -18254.195866 eV Core-core repulsion = 15358.924698 eV Total energy + Delta-G solvation = -2895.271169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.59010 -41.18597 -37.92784 -35.51830 -33.24461 -32.31278 -31.03594 -28.32141 -27.37828 -26.87149 -23.57525 -22.18887 -22.05041 -21.41201 -18.67771 -17.39086 -16.96180 -16.66704 -16.39209 -16.19946 -15.48491 -15.27268 -14.93892 -14.63876 -14.26295 -14.01589 -13.72269 -13.57906 -13.22709 -13.16344 -13.04774 -12.77566 -12.55247 -12.48968 -12.31323 -12.10655 -11.95852 -11.66680 -10.96755 -10.72378 -10.54559 -9.83833 -9.74426 -9.10328 -8.08178 -6.27441 0.42369 0.48369 1.41126 1.43425 1.52868 2.43305 2.84656 3.04236 3.22092 3.49848 3.61517 4.13655 4.17377 4.21828 4.24524 4.42325 4.47169 4.55812 4.61265 4.66576 4.75161 4.81854 4.83897 4.92523 4.99908 5.08977 5.16745 5.53728 5.59522 5.61421 5.64388 5.79944 5.90254 6.02431 6.11429 6.16358 6.24857 6.78999 7.45785 8.94453 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.006306 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.481172 B = 4438.918146 C = 4730.840462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.227 3.773 3 F -0.249 7.249 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.264 1.264 12 C 0.043 3.957 13 N -0.498 5.498 14 C 0.078 3.922 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.114 4.114 21 C 0.069 3.931 22 H 0.038 0.962 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.260 0.740 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 -3.970 -12.767 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.209 3.791 3 F -0.230 7.230 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.546 5.546 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.188 1.188 12 C -0.085 4.085 13 N -0.221 5.221 14 C -0.049 4.049 15 C -0.119 4.119 16 C -0.134 4.134 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.058 4.058 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.110 0.890 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.607 -3.919 -12.051 15.902 hybrid contribution -0.460 0.200 0.390 0.635 sum 9.147 -3.719 -11.661 15.280 Atomic orbital electron populations 1.22130 0.96596 1.01636 1.00511 1.18672 0.91385 0.75364 0.93720 1.92654 1.90672 1.41895 1.97747 1.21559 1.31970 1.13096 0.90792 0.92048 1.25770 0.94617 0.95383 1.02080 1.70073 1.36983 1.23666 1.23908 0.85593 0.77758 0.79326 0.79098 1.21067 1.20627 1.18820 1.22820 0.87200 1.01699 0.96803 1.66179 1.10377 1.02702 1.42802 1.21868 0.92512 0.93823 0.96718 1.20830 0.95827 0.95511 0.99771 1.20749 0.92596 1.00180 0.99906 1.21428 0.97535 0.96017 0.98771 1.21470 0.98912 0.93601 0.99770 1.20773 0.91559 1.01169 0.98966 1.20804 0.96237 0.94684 0.99774 1.21983 0.92302 0.97041 0.94483 0.94275 0.91855 0.92486 0.93057 0.89284 0.94428 0.92697 0.91453 0.85356 0.82942 0.82560 0.83888 0.88969 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.18 8.62 71.98 0.62 -6.56 16 2 C 0.23 11.56 0.99 -11.54 -0.01 11.55 16 3 F -0.25 -14.08 14.35 44.97 0.65 -13.43 16 4 C -0.54 -29.88 8.01 25.60 0.21 -29.67 16 5 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 6 C 0.02 1.24 5.27 84.65 0.45 1.68 16 7 N -0.91 -53.66 11.05 21.45 0.24 -53.42 16 8 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 9 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.04 1.81 4.09 86.30 0.35 2.16 16 13 N -0.50 -20.31 5.17 -890.90 -4.60 -24.92 16 14 C 0.08 3.04 5.61 85.44 0.48 3.52 16 15 C -0.12 -3.95 6.28 -19.56 -0.12 -4.07 16 16 C -0.12 -3.20 10.04 22.22 0.22 -2.98 16 17 C -0.12 -2.58 10.05 22.29 0.22 -2.36 16 18 C -0.12 -2.42 10.05 22.29 0.22 -2.20 16 19 C -0.11 -2.53 10.04 22.22 0.22 -2.31 16 20 C -0.11 -3.49 6.28 -19.56 -0.12 -3.61 16 21 C 0.07 2.21 6.42 85.44 0.55 2.76 16 22 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.06 3.41 6.24 -2.39 -0.01 3.40 16 24 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.09 3.43 8.01 -2.39 -0.02 3.41 16 27 H 0.04 1.44 7.53 -2.39 -0.02 1.42 16 28 H 0.06 2.03 7.56 -2.39 -0.02 2.01 16 29 H 0.07 2.99 7.16 -2.39 -0.02 2.98 16 30 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 1.94 7.94 -2.39 -0.02 1.92 16 Total: -1.00 -66.23 290.31 2.66 -63.56 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.07 Total: 13.33 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 3.29 Total: -32.09 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -4.37 Total: -78.34 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 0.65 Total: -13.43 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.23 2.66 -63.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261355496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.177 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds