Wall clock time and date at job start Mon Mar 30 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 F 1.39902 * 109.46647 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00255 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.52999 * 109.47094 * 119.99906 * 2 1 3 13 13 N 1.46900 * 109.47276 * 300.00178 * 12 2 1 14 14 C 1.48906 * 110.99832 * 282.52601 * 13 12 2 15 15 C 1.51544 * 104.09952 * 205.78951 * 14 13 12 16 16 C 1.37985 * 132.19697 * 202.91671 * 15 14 13 17 17 C 1.38278 * 119.94455 * 179.97438 * 16 15 14 18 18 C 1.38258 * 120.03879 * 359.97438 * 17 16 15 19 19 C 1.38283 * 120.03459 * 0.03172 * 18 17 16 20 20 C 1.37981 * 119.94072 * 359.97438 * 19 18 17 21 21 C 1.48909 * 111.00179 * 170.00011 * 13 12 2 22 22 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47127 * 299.99838 * 1 2 3 24 24 H 1.08994 * 109.46846 * 60.00160 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.08995 * 109.46838 * 60.00314 * 12 2 1 27 27 H 1.09001 * 109.47054 * 180.02562 * 12 2 1 28 28 H 1.09001 * 110.50640 * 324.44039 * 14 13 12 29 29 H 1.09004 * 110.51013 * 87.13475 * 14 13 12 30 30 H 1.08009 * 120.02281 * 359.97438 * 16 15 14 31 31 H 1.08007 * 119.98329 * 180.02562 * 17 16 15 32 32 H 1.08007 * 119.98325 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.03090 * 180.02562 * 19 18 17 34 34 H 1.09001 * 110.50534 * 272.86584 * 21 13 12 35 35 H 1.08997 * 110.50472 * 35.55827 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 2.1422 -0.8560 -3.5565 8 14 0.6248 1.2791 -2.6542 9 1 -0.8024 0.8721 -2.7065 10 1 0.8421 2.1734 -1.4887 11 1 0.9805 1.9988 -3.9034 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.3384 1.2073 2.7103 15 6 2.2000 1.4242 4.2037 16 6 2.3252 2.5495 4.9924 17 6 2.1410 2.4581 6.3598 18 6 1.8309 1.2404 6.9365 19 6 1.7054 0.1124 6.1465 20 6 1.8894 0.2032 4.7820 21 6 1.8208 -0.8293 3.6748 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.9111 -0.5223 -4.4375 26 1 1.6768 -1.7488 1.2492 27 1 3.1301 -0.7208 1.2495 28 1 3.3841 1.0575 2.4417 29 1 1.9193 2.0507 2.1615 30 1 2.5670 3.5010 4.5419 31 1 2.2385 3.3386 6.9776 32 1 1.6876 1.1699 8.0047 33 1 1.4629 -0.8388 6.5970 34 1 1.0085 -1.5326 3.8585 35 1 2.7705 -1.3564 3.5849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261355497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:23 Heat of formation + Delta-G solvation = 3.038771 kcal Electronic energy + Delta-G solvation = -18253.097901 eV Core-core repulsion = 15359.059358 eV Total energy + Delta-G solvation = -2894.038543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.24180 -40.16057 -36.83404 -33.71750 -31.84402 -31.36160 -29.88481 -27.23332 -26.02973 -25.16346 -22.54389 -21.13400 -21.08869 -19.43682 -16.94079 -16.31156 -15.89887 -15.50509 -15.06487 -14.87724 -14.16195 -13.82866 -13.49305 -13.34111 -13.02107 -12.93092 -12.56744 -12.32509 -12.13660 -12.01706 -11.98193 -11.19619 -11.12911 -10.88957 -10.71535 -10.39484 -10.24429 -10.10418 -9.05282 -8.84524 -8.82595 -8.75911 -8.64628 -8.01371 -6.21378 -4.33271 1.35638 1.40215 3.30269 3.42620 3.55500 3.77056 4.29331 4.39215 4.49507 4.69990 4.99745 5.01985 5.14032 5.42691 5.48309 5.51625 5.61173 5.74787 5.78749 5.87724 5.98162 6.02370 6.07425 6.15743 6.33573 6.43623 6.48202 6.52770 6.62353 6.66967 6.97977 6.99387 7.05717 7.18101 7.45141 7.58147 8.31027 8.75043 9.39761 10.89715 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.046541 B = 0.005720 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.480296 B = 4893.840195 C = 5168.810562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 F -0.235 7.235 4 C -0.553 4.553 5 H 0.082 0.918 6 C 0.086 3.914 7 N -0.887 5.887 8 Si 0.881 3.119 9 H -0.283 1.283 10 H -0.239 1.239 11 H -0.299 1.299 12 C 0.038 3.962 13 N -0.493 5.493 14 C 0.071 3.929 15 C -0.092 4.092 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.103 4.103 20 C -0.098 4.098 21 C 0.068 3.932 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.267 0.733 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 3.474 17.884 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.196 3.804 3 F -0.216 7.216 4 C -0.591 4.591 5 H 0.100 0.900 6 C -0.118 4.118 7 N -0.523 5.523 8 Si 0.710 3.290 9 H -0.210 1.210 10 H -0.162 1.162 11 H -0.227 1.227 12 C -0.090 4.090 13 N -0.216 5.216 14 C -0.056 4.056 15 C -0.093 4.093 16 C -0.122 4.122 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.099 4.099 21 C -0.060 4.060 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.425 3.579 17.556 17.974 hybrid contribution 0.350 0.525 -0.219 0.668 sum -1.075 4.105 17.337 17.849 Atomic orbital electron populations 1.22404 0.97063 1.01951 1.00097 1.18811 0.91578 0.76136 0.93858 1.92706 1.90580 1.40908 1.97398 1.21139 1.34831 1.14571 0.88574 0.90002 1.24948 0.94765 0.96605 0.95528 1.69903 1.44024 1.40203 0.98141 0.87118 0.79661 0.84250 0.77957 1.21006 1.16202 1.22736 1.22883 0.98195 0.98674 0.89224 1.66345 1.49913 1.03902 1.01458 1.22079 0.97296 0.95830 0.90409 1.20875 0.98239 0.93805 0.96334 1.20489 1.00742 0.97672 0.93301 1.21037 1.00709 0.97707 0.94548 1.21015 1.01157 0.92732 0.99462 1.20429 1.00901 0.98710 0.92115 1.20704 0.99328 0.95933 0.93901 1.21945 1.00841 0.94894 0.88295 0.91832 0.92792 0.93948 0.92290 0.89528 0.93701 0.91884 0.88322 0.86081 0.86053 0.86087 0.86247 0.89328 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.27 37.16 0.31 -3.19 16 2 C 0.22 5.08 0.94 -91.77 -0.09 4.99 16 3 F -0.23 -5.80 11.75 2.25 0.03 -5.77 16 4 C -0.55 -15.36 8.91 -34.44 -0.31 -15.67 16 5 H 0.08 2.40 7.99 -52.49 -0.42 1.99 16 6 C 0.09 2.49 5.45 -17.82 -0.10 2.40 16 7 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 8 Si 0.88 22.36 23.98 -169.99 -4.08 18.28 16 9 H -0.28 -6.96 6.88 56.52 0.39 -6.57 16 10 H -0.24 -5.97 5.47 56.52 0.31 -5.66 16 11 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 12 C 0.04 0.76 4.07 -3.82 -0.02 0.74 16 13 N -0.49 -8.68 4.76 -232.95 -1.11 -9.79 16 14 C 0.07 1.21 5.39 -3.45 -0.02 1.19 16 15 C -0.09 -1.37 6.28 -104.16 -0.65 -2.03 16 16 C -0.10 -1.33 10.04 -39.66 -0.40 -1.73 16 17 C -0.12 -1.35 10.05 -39.56 -0.40 -1.75 16 18 C -0.13 -1.35 10.05 -39.56 -0.40 -1.75 16 19 C -0.10 -1.23 10.04 -39.66 -0.40 -1.63 16 20 C -0.10 -1.39 6.28 -104.16 -0.65 -2.04 16 21 C 0.07 0.99 6.46 -3.45 -0.02 0.96 16 22 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 23 H 0.05 1.10 7.60 -51.93 -0.39 0.71 16 24 H 0.04 0.99 3.28 -51.93 -0.17 0.82 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.09 1.62 8.08 -51.93 -0.42 1.20 16 27 H 0.04 0.89 7.66 -51.93 -0.40 0.50 16 28 H 0.06 1.08 7.64 -51.93 -0.40 0.68 16 29 H 0.10 1.79 7.15 -51.93 -0.37 1.42 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.83 7.94 -51.93 -0.41 0.41 16 LS Contribution 280.29 15.07 4.22 4.22 Total: -1.00 -30.58 280.29 -8.06 -38.64 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.76 Total: 0.02 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -3.14 Total: -19.50 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.33 Total: -35.89 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.03 Total: -5.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.08 Total: 18.28 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.58 -8.06 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261355497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.679 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds