Wall clock time and date at job start Mon Mar 30 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 F 1.39902 * 109.46647 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00255 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.52999 * 109.47094 * 119.99906 * 2 1 3 13 13 N 1.46900 * 109.47276 * 300.00178 * 12 2 1 14 14 C 1.48906 * 110.99832 * 282.52601 * 13 12 2 15 15 C 1.51544 * 104.09952 * 205.78951 * 14 13 12 16 16 C 1.37985 * 132.19697 * 202.91671 * 15 14 13 17 17 C 1.38278 * 119.94455 * 179.97438 * 16 15 14 18 18 C 1.38258 * 120.03879 * 359.97438 * 17 16 15 19 19 C 1.38283 * 120.03459 * 0.03172 * 18 17 16 20 20 C 1.37981 * 119.94072 * 359.97438 * 19 18 17 21 21 C 1.48909 * 111.00179 * 170.00011 * 13 12 2 22 22 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47127 * 299.99838 * 1 2 3 24 24 H 1.08994 * 109.46846 * 60.00160 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.08995 * 109.46838 * 60.00314 * 12 2 1 27 27 H 1.09001 * 109.47054 * 180.02562 * 12 2 1 28 28 H 1.09001 * 110.50640 * 324.44039 * 14 13 12 29 29 H 1.09004 * 110.51013 * 87.13475 * 14 13 12 30 30 H 1.08009 * 120.02281 * 359.97438 * 16 15 14 31 31 H 1.08007 * 119.98329 * 180.02562 * 17 16 15 32 32 H 1.08007 * 119.98325 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.03090 * 180.02562 * 19 18 17 34 34 H 1.09001 * 110.50534 * 272.86584 * 21 13 12 35 35 H 1.08997 * 110.50472 * 35.55827 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 2.1422 -0.8560 -3.5565 8 14 0.6248 1.2791 -2.6542 9 1 -0.8024 0.8721 -2.7065 10 1 0.8421 2.1734 -1.4887 11 1 0.9805 1.9988 -3.9034 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.3384 1.2073 2.7103 15 6 2.2000 1.4242 4.2037 16 6 2.3252 2.5495 4.9924 17 6 2.1410 2.4581 6.3598 18 6 1.8309 1.2404 6.9365 19 6 1.7054 0.1124 6.1465 20 6 1.8894 0.2032 4.7820 21 6 1.8208 -0.8293 3.6748 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.9111 -0.5223 -4.4375 26 1 1.6768 -1.7488 1.2492 27 1 3.1301 -0.7208 1.2495 28 1 3.3841 1.0575 2.4417 29 1 1.9193 2.0507 2.1615 30 1 2.5670 3.5010 4.5419 31 1 2.2385 3.3386 6.9776 32 1 1.6876 1.1699 8.0047 33 1 1.4629 -0.8388 6.5970 34 1 1.0085 -1.5326 3.8585 35 1 2.7705 -1.3564 3.5849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261355497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:22 Heat of formation + Delta-G solvation = -16.173290 kcal Electronic energy + Delta-G solvation = -18253.930998 eV Core-core repulsion = 15359.059358 eV Total energy + Delta-G solvation = -2894.871641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.19544 -41.23163 -38.02570 -35.61937 -33.67592 -32.32502 -31.29748 -28.35658 -27.60235 -27.07049 -23.87871 -22.24352 -22.07002 -21.21381 -19.00811 -17.59757 -17.32484 -16.87395 -16.36271 -16.25877 -15.77311 -15.29653 -15.14957 -14.73315 -14.68266 -14.25693 -14.04571 -13.98314 -13.64839 -13.33576 -13.15714 -12.85805 -12.56555 -12.48534 -12.15041 -12.06767 -11.96646 -11.66138 -11.04903 -10.83508 -10.71526 -9.98398 -9.75081 -9.22463 -8.44517 -6.59578 0.41159 0.47892 1.27645 1.36851 1.52417 2.27474 2.84126 2.92713 2.95253 3.45000 3.57679 4.00857 4.12446 4.13292 4.21337 4.24268 4.41190 4.45008 4.49154 4.62764 4.65415 4.74251 4.78531 4.83187 4.90231 5.07135 5.15346 5.19895 5.36689 5.49784 5.53595 5.60318 5.63994 5.82260 5.89854 6.10451 6.14375 6.49392 7.16729 8.70205 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.046541 B = 0.005720 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.480296 B = 4893.840195 C = 5168.810562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.208 3.792 3 F -0.241 7.241 4 C -0.557 4.557 5 H 0.052 0.948 6 C 0.036 3.964 7 N -0.930 5.930 8 Si 0.935 3.065 9 H -0.267 1.267 10 H -0.234 1.234 11 H -0.301 1.301 12 C 0.051 3.949 13 N -0.501 5.501 14 C 0.073 3.927 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.105 4.105 20 C -0.114 4.114 21 C 0.069 3.931 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.270 0.730 26 H 0.095 0.905 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.143 0.857 34 H 0.103 0.897 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 4.283 20.854 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.189 3.811 3 F -0.222 7.222 4 C -0.595 4.595 5 H 0.070 0.930 6 C -0.164 4.164 7 N -0.568 5.568 8 Si 0.761 3.239 9 H -0.193 1.193 10 H -0.157 1.157 11 H -0.229 1.229 12 C -0.078 4.078 13 N -0.224 5.224 14 C -0.054 4.054 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.058 4.058 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.121 0.879 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.578 4.384 20.549 21.169 hybrid contribution 0.774 0.247 -1.040 1.320 sum -1.804 4.631 19.509 20.132 Atomic orbital electron populations 1.22320 0.95474 1.02753 1.00339 1.18884 0.92728 0.75611 0.93851 1.92682 1.90817 1.41289 1.97459 1.21446 1.33816 1.13818 0.90461 0.92983 1.25713 0.96106 0.99287 0.95338 1.70012 1.45933 1.42044 0.98777 0.86250 0.78832 0.81034 0.77751 1.19347 1.15726 1.22897 1.22598 0.97450 0.98720 0.89033 1.66247 1.49862 1.04472 1.01771 1.21928 0.96282 0.94940 0.92299 1.20792 1.00810 0.95308 0.95010 1.20742 1.00762 0.97467 0.94290 1.21429 0.99289 0.99173 0.93886 1.21472 0.99205 0.91985 1.01097 1.20767 1.00065 1.00383 0.91154 1.20762 1.00646 0.95163 0.94854 1.21976 1.01618 0.95047 0.87144 0.90826 0.91015 0.95013 0.92043 0.88661 0.94746 0.93144 0.90212 0.85249 0.83086 0.82729 0.83886 0.87853 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 8.27 71.99 0.60 -5.93 16 2 C 0.21 9.82 0.94 -11.54 -0.01 9.81 16 3 F -0.24 -11.94 11.75 44.97 0.53 -11.41 16 4 C -0.56 -31.59 8.91 25.60 0.23 -31.37 16 5 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16 6 C 0.04 2.12 5.45 84.65 0.46 2.59 16 7 N -0.93 -57.63 13.96 21.45 0.30 -57.33 16 8 Si 0.93 46.21 23.98 68.60 1.64 47.85 16 9 H -0.27 -12.45 6.88 99.48 0.68 -11.77 16 10 H -0.23 -11.32 5.47 99.48 0.54 -10.77 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 12 C 0.05 2.01 4.07 86.30 0.35 2.36 16 13 N -0.50 -17.31 4.76 -890.91 -4.24 -21.55 16 14 C 0.07 2.49 5.39 85.44 0.46 2.95 16 15 C -0.12 -3.43 6.28 -19.56 -0.12 -3.55 16 16 C -0.11 -2.73 10.04 22.22 0.22 -2.50 16 17 C -0.12 -2.23 10.05 22.28 0.22 -2.00 16 18 C -0.12 -2.07 10.05 22.29 0.22 -1.85 16 19 C -0.11 -2.15 10.04 22.22 0.22 -1.93 16 20 C -0.11 -3.00 6.28 -19.56 -0.12 -3.12 16 21 C 0.07 1.92 6.46 85.44 0.55 2.47 16 22 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 23 H 0.07 2.81 7.60 -2.39 -0.02 2.80 16 24 H 0.03 1.42 3.28 -2.39 -0.01 1.41 16 25 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.10 3.54 8.08 -2.39 -0.02 3.52 16 27 H 0.03 1.41 7.66 -2.39 -0.02 1.39 16 28 H 0.05 1.79 7.64 -2.39 -0.02 1.77 16 29 H 0.08 2.94 7.15 -2.38 -0.02 2.93 16 30 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16 Total: -1.00 -66.23 280.29 2.41 -63.82 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.89 Total: 10.69 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 3.29 Total: -32.07 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.94 Total: -78.87 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 0.53 Total: -11.41 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.64 Total: 47.85 kcal Total: -66.23 2.41 -63.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261355497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.644 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds