Wall clock time and date at job start Mon Mar 30 2020 07:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00436 * 2 1 4 4 H 1.48496 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46908 * 300.00419 * 3 2 1 6 6 H 1.48507 * 109.46721 * 60.00041 * 3 2 1 7 7 C 1.37880 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99792 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.43017 * 57.46578 * 9 7 2 11 11 C 1.55238 * 110.46892 * 294.81409 * 9 7 2 12 12 C 1.54894 * 102.58338 * 203.39217 * 11 9 7 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 9 14 14 H 1.08996 * 110.03108 * 216.98559 * 13 12 11 15 15 N 1.46500 * 110.03161 * 95.60564 * 13 12 11 16 16 C 1.34780 * 119.99869 * 86.45483 * 15 13 12 17 17 O 1.21611 * 120.00000 * 359.97438 * 16 15 13 18 18 C 1.47108 * 119.99749 * 180.02562 * 16 15 13 19 19 C 1.32994 * 119.99682 * 179.97438 * 18 16 15 20 20 C 1.51402 * 136.31789 * 359.62645 * 19 18 16 21 21 C 1.53378 * 87.52029 * 206.05569 * 20 19 18 22 22 C 1.51404 * 136.31365 * 179.97438 * 19 18 16 23 23 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 24 24 H 0.97009 * 119.99825 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.89448 * 85.10781 * 11 9 7 26 26 H 1.08993 * 110.76342 * 321.62447 * 11 9 7 27 27 H 1.09002 * 110.48891 * 279.18596 * 12 11 9 28 28 H 1.08998 * 110.48494 * 156.67683 * 12 11 9 29 29 H 0.96998 * 119.99985 * 266.45205 * 15 13 12 30 30 H 1.08000 * 120.00138 * 359.97438 * 18 16 15 31 31 H 1.09006 * 113.56118 * 320.63997 * 20 19 18 32 32 H 1.09001 * 113.56597 * 91.37048 * 20 19 18 33 33 H 1.08989 * 113.96893 * 220.28997 * 21 20 19 34 34 H 1.09008 * 113.70758 * 88.80612 * 21 20 19 35 35 H 1.09001 * 113.55790 * 268.62337 * 22 19 18 36 36 H 1.08996 * 113.56339 * 39.28497 * 22 19 18 37 37 H 1.08999 * 110.04012 * 119.28327 * 23 13 12 38 38 H 1.09003 * 110.03070 * 240.71854 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5846 -2.5538 -0.8615 11 6 0.4514 -2.6644 1.3198 12 6 0.2757 -4.2002 1.4180 13 6 1.6123 -4.7708 0.9008 14 1 1.4329 -5.6795 0.3262 15 7 2.5047 -5.0575 2.0267 16 6 2.4308 -6.2451 2.6597 17 8 1.6230 -7.0785 2.2966 18 6 3.3266 -6.5327 3.7907 19 6 3.2533 -7.7044 4.4156 20 6 2.4199 -8.9621 4.2900 21 6 2.6883 -9.2089 5.7798 22 6 3.9618 -8.3733 5.5744 23 6 2.2324 -3.6893 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5168 -2.1683 1.2527 26 1 1.0227 -2.2859 2.1674 27 1 -0.5497 -4.5308 0.7875 28 1 0.1079 -4.4996 2.4525 29 1 3.1488 -4.3927 2.3165 30 1 4.0437 -5.7924 4.1134 31 1 1.3711 -8.7691 4.0639 32 1 2.8622 -9.7145 3.6370 33 1 2.8817 -10.2524 6.0278 34 1 1.9570 -8.7425 6.4400 35 1 4.8268 -8.9643 5.2736 36 1 4.1789 -7.6972 6.4013 37 1 3.1973 -3.3777 0.3988 38 1 2.3538 -4.0726 -1.0142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296757274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:23 Heat of formation + Delta-G solvation = -15.551579 kcal Electronic energy + Delta-G solvation = -17821.210896 eV Core-core repulsion = 15049.826520 eV Total energy + Delta-G solvation = -2771.384376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73160 -38.49119 -36.85261 -33.46879 -32.00688 -30.69150 -28.14150 -27.04651 -25.89703 -24.05377 -23.17959 -20.86373 -19.47852 -19.14592 -18.02509 -16.79837 -16.49997 -15.64099 -15.57560 -14.97861 -14.55135 -14.16205 -13.85658 -13.72582 -12.78566 -12.60995 -12.34783 -12.08287 -11.82984 -11.67560 -11.14859 -11.02503 -10.98113 -10.82557 -10.61867 -10.51538 -10.35443 -9.93338 -9.56484 -9.38024 -9.23216 -9.19574 -8.79799 -8.47849 -8.34446 -6.01031 -4.04009 1.42638 3.28736 3.37194 3.40037 3.53990 3.57899 4.32827 4.40974 4.43917 4.62399 4.94033 5.20907 5.30973 5.37229 5.45952 5.53825 5.61625 5.64739 5.70070 5.85964 5.91618 6.06417 6.18603 6.36182 6.38476 6.56206 6.66591 6.67470 6.79145 6.96462 6.98405 7.28221 7.37075 7.70723 7.86427 7.97196 8.03396 8.43632 8.62405 8.98831 9.59993 11.08450 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.042634 B = 0.004105 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.591665 B = 6819.870597 C = 7085.860013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.099 4.099 12 C -0.136 4.136 13 C 0.141 3.859 14 H 0.075 0.925 15 N -0.710 5.710 16 C 0.544 3.456 17 O -0.552 6.552 18 C -0.192 4.192 19 C -0.072 4.072 20 C -0.104 4.104 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.122 4.122 24 H 0.259 0.741 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.400 0.600 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -13.911 9.542 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.137 4.137 12 C -0.174 4.174 13 C 0.037 3.963 14 H 0.093 0.907 15 N -0.360 5.360 16 C 0.332 3.668 17 O -0.432 6.432 18 C -0.213 4.213 19 C -0.074 4.074 20 C -0.141 4.141 21 C -0.180 4.180 22 C -0.145 4.145 23 C -0.161 4.161 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.234 0.766 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.024 -14.364 9.250 18.115 hybrid contribution 0.787 1.468 0.199 1.677 sum 6.811 -12.896 9.449 17.377 Atomic orbital electron populations 1.69975 1.05877 1.26308 1.50484 1.24990 0.94829 0.99020 0.95145 0.86598 0.80130 0.84079 0.77535 1.19844 1.21103 1.21116 1.21214 0.92679 0.90503 1.50774 0.92666 1.19535 0.92468 0.91108 0.94025 0.94895 1.22506 1.01239 0.90490 0.99472 1.22836 0.95869 0.99199 0.99512 1.21749 0.89947 0.98259 0.86377 0.90724 1.46204 1.39283 1.16432 1.34072 1.18413 0.83402 0.82127 0.82840 1.90733 1.38778 1.47067 1.66593 1.21729 1.02853 0.98212 0.98488 1.23382 0.95743 0.94246 0.93997 1.22179 1.01454 0.94642 0.95817 1.22729 0.97663 1.00329 0.97303 1.22332 0.97782 0.98315 0.96061 1.22604 1.00368 0.95945 0.97137 0.93143 0.91541 0.93517 0.92129 0.93232 0.76577 0.85151 0.89530 0.88676 0.90605 0.89798 0.88358 0.90544 0.92022 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 12.30 55.43 0.68 -24.63 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.71 8.47 -34.44 -0.29 -14.00 16 8 H 0.06 1.45 7.54 -52.49 -0.40 1.05 16 9 C 0.05 1.15 2.73 -89.92 -0.25 0.90 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.10 -2.28 5.77 -24.55 -0.14 -2.42 16 12 C -0.14 -2.71 6.52 -25.07 -0.16 -2.87 16 13 C 0.14 2.62 3.23 -66.82 -0.22 2.40 16 14 H 0.07 1.43 7.60 -51.93 -0.39 1.03 16 15 N -0.71 -11.57 5.04 -53.90 -0.27 -11.84 16 16 C 0.54 8.94 7.75 -12.66 -0.10 8.84 16 17 O -0.55 -10.75 14.83 5.27 0.08 -10.67 16 18 C -0.19 -2.47 10.03 -37.80 -0.38 -2.85 16 19 C -0.07 -0.84 6.93 -100.49 -0.70 -1.53 16 20 C -0.10 -1.16 6.99 -27.56 -0.19 -1.36 16 21 C -0.14 -1.20 8.17 -26.18 -0.21 -1.41 16 22 C -0.11 -0.90 7.96 -27.39 -0.22 -1.12 16 23 C -0.12 -2.45 6.13 -25.62 -0.16 -2.60 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.07 1.68 7.57 -51.93 -0.39 1.29 16 26 H 0.05 1.09 8.05 -51.93 -0.42 0.68 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 29 H 0.40 5.75 8.28 -40.82 -0.34 5.41 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.09 1.15 7.49 -51.93 -0.39 0.76 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.51 8.14 -51.94 -0.42 0.09 16 34 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 1.19 7.12 -51.93 -0.37 0.82 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 312.23 15.07 4.71 4.71 Total: -1.00 -30.12 312.23 -8.99 -39.11 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.06 Total: 3.79 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -3.11 Total: -16.42 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.41 Total: -36.47 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.12 -8.99 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296757274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.562 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds