Wall clock time and date at job start Mon Mar 30 2020 07:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00436 * 2 1 4 4 H 1.48496 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46908 * 300.00419 * 3 2 1 6 6 H 1.48507 * 109.46721 * 60.00041 * 3 2 1 7 7 C 1.37880 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99792 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.43017 * 57.46578 * 9 7 2 11 11 C 1.55238 * 110.46892 * 294.81409 * 9 7 2 12 12 C 1.54894 * 102.58338 * 203.39217 * 11 9 7 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 9 14 14 H 1.08996 * 110.03108 * 216.98559 * 13 12 11 15 15 N 1.46500 * 110.03161 * 95.60564 * 13 12 11 16 16 C 1.34780 * 119.99869 * 86.45483 * 15 13 12 17 17 O 1.21611 * 120.00000 * 359.97438 * 16 15 13 18 18 C 1.47108 * 119.99749 * 180.02562 * 16 15 13 19 19 C 1.32994 * 119.99682 * 179.97438 * 18 16 15 20 20 C 1.51402 * 136.31789 * 359.62645 * 19 18 16 21 21 C 1.53378 * 87.52029 * 206.05569 * 20 19 18 22 22 C 1.51404 * 136.31365 * 179.97438 * 19 18 16 23 23 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 24 24 H 0.97009 * 119.99825 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.89448 * 85.10781 * 11 9 7 26 26 H 1.08993 * 110.76342 * 321.62447 * 11 9 7 27 27 H 1.09002 * 110.48891 * 279.18596 * 12 11 9 28 28 H 1.08998 * 110.48494 * 156.67683 * 12 11 9 29 29 H 0.96998 * 119.99985 * 266.45205 * 15 13 12 30 30 H 1.08000 * 120.00138 * 359.97438 * 18 16 15 31 31 H 1.09006 * 113.56118 * 320.63997 * 20 19 18 32 32 H 1.09001 * 113.56597 * 91.37048 * 20 19 18 33 33 H 1.08989 * 113.96893 * 220.28997 * 21 20 19 34 34 H 1.09008 * 113.70758 * 88.80612 * 21 20 19 35 35 H 1.09001 * 113.55790 * 268.62337 * 22 19 18 36 36 H 1.08996 * 113.56339 * 39.28497 * 22 19 18 37 37 H 1.08999 * 110.04012 * 119.28327 * 23 13 12 38 38 H 1.09003 * 110.03070 * 240.71854 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5846 -2.5538 -0.8615 11 6 0.4514 -2.6644 1.3198 12 6 0.2757 -4.2002 1.4180 13 6 1.6123 -4.7708 0.9008 14 1 1.4329 -5.6795 0.3262 15 7 2.5047 -5.0575 2.0267 16 6 2.4308 -6.2451 2.6597 17 8 1.6230 -7.0785 2.2966 18 6 3.3266 -6.5327 3.7907 19 6 3.2533 -7.7044 4.4156 20 6 2.4199 -8.9621 4.2900 21 6 2.6883 -9.2089 5.7798 22 6 3.9618 -8.3733 5.5744 23 6 2.2324 -3.6893 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5168 -2.1683 1.2527 26 1 1.0227 -2.2859 2.1674 27 1 -0.5497 -4.5308 0.7875 28 1 0.1079 -4.4996 2.4525 29 1 3.1488 -4.3927 2.3165 30 1 4.0437 -5.7924 4.1134 31 1 1.3711 -8.7691 4.0639 32 1 2.8622 -9.7145 3.6370 33 1 2.8817 -10.2524 6.0278 34 1 1.9570 -8.7425 6.4400 35 1 4.8268 -8.9643 5.2736 36 1 4.1789 -7.6972 6.4013 37 1 3.1973 -3.3777 0.3988 38 1 2.3538 -4.0726 -1.0142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296757274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:23 Heat of formation + Delta-G solvation = -32.793518 kcal Electronic energy + Delta-G solvation = -17821.958562 eV Core-core repulsion = 15049.826520 eV Total energy + Delta-G solvation = -2772.132043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98518 -39.51936 -38.39230 -35.17812 -33.76740 -31.76328 -29.96181 -28.71491 -26.64965 -25.88079 -24.26108 -22.06995 -21.10411 -20.83673 -19.07257 -18.51599 -17.93204 -16.92378 -16.63243 -16.40484 -16.18519 -15.43979 -15.31277 -15.09125 -14.55217 -14.04323 -13.56980 -13.31036 -12.96903 -12.90854 -12.78107 -12.63007 -12.49727 -12.32504 -12.19517 -11.87897 -11.67802 -11.46056 -11.42171 -11.08235 -10.81059 -10.61462 -10.44544 -10.23761 -9.82026 -8.09527 -6.19153 0.42655 1.42322 1.44668 1.55392 2.31601 2.37701 2.46216 3.21707 3.45620 3.61586 3.85139 3.93900 4.02256 4.21241 4.24877 4.30032 4.64011 4.68844 4.75771 4.76632 4.86596 4.92247 4.97779 5.00573 5.06222 5.10118 5.17893 5.24995 5.30307 5.38319 5.42781 5.66883 5.68258 5.74502 5.89921 5.99710 6.38726 6.71864 6.92248 7.35760 7.48493 8.99670 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.042634 B = 0.004105 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.591665 B = 6819.870597 C = 7085.860013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.000 1.000 11 C -0.088 4.088 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.073 0.927 15 N -0.706 5.706 16 C 0.539 3.461 17 O -0.589 6.589 18 C -0.211 4.211 19 C -0.072 4.072 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.094 4.094 23 C -0.110 4.110 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.411 0.589 30 H 0.158 0.842 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 -14.675 11.071 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.018 0.982 11 C -0.126 4.126 12 C -0.164 4.164 13 C 0.047 3.953 14 H 0.091 0.909 15 N -0.356 5.356 16 C 0.330 3.670 17 O -0.472 6.472 18 C -0.232 4.232 19 C -0.074 4.074 20 C -0.156 4.156 21 C -0.170 4.170 22 C -0.131 4.131 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.247 0.753 30 H 0.176 0.824 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.366 -15.125 10.791 20.377 hybrid contribution 0.012 1.630 -0.286 1.655 sum 8.378 -13.495 10.505 19.043 Atomic orbital electron populations 1.70113 1.07378 1.27029 1.51582 1.25795 0.95606 1.02539 0.94997 0.85565 0.79320 0.79805 0.77303 1.18654 1.21104 1.20918 1.21591 0.93083 0.91600 1.50130 0.92205 1.19512 0.92984 0.92356 0.93152 0.98163 1.22269 0.99271 0.92389 0.98660 1.22722 0.97004 0.96831 0.99832 1.21427 0.89441 0.97465 0.86956 0.90931 1.46079 1.39082 1.17006 1.33471 1.19044 0.83297 0.81337 0.83294 1.90716 1.40535 1.48093 1.67862 1.21714 1.03587 0.99835 0.98054 1.23930 0.95529 0.93715 0.94268 1.22332 0.99731 0.95134 0.98366 1.22717 0.97645 1.01877 0.94778 1.22393 0.98005 0.97982 0.94681 1.22421 0.99611 0.94504 0.98242 0.93253 0.94563 0.94117 0.92185 0.92885 0.75288 0.82434 0.92504 0.87998 0.88366 0.89903 0.86201 0.88912 0.90931 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.67 12.30 21.45 0.26 -53.40 16 2 C 0.01 0.50 5.35 84.66 0.45 0.95 16 3 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.53 -28.14 8.47 25.60 0.22 -27.92 16 8 H 0.06 3.08 7.54 -2.91 -0.02 3.06 16 9 C 0.04 1.91 2.73 -10.34 -0.03 1.88 16 10 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 11 C -0.09 -4.13 5.77 32.01 0.18 -3.95 16 12 C -0.13 -5.04 6.52 31.67 0.21 -4.84 16 13 C 0.15 5.59 3.23 45.71 0.15 5.74 16 14 H 0.07 2.75 7.60 -2.39 -0.02 2.73 16 15 N -0.71 -22.22 5.04 -442.70 -2.23 -24.45 16 16 C 0.54 17.31 7.75 86.57 0.67 17.98 16 17 O -0.59 -23.03 14.83 -4.07 -0.06 -23.09 16 18 C -0.21 -5.04 10.03 23.43 0.23 -4.81 16 19 C -0.07 -1.54 6.93 -17.17 -0.12 -1.66 16 20 C -0.12 -2.51 6.99 30.06 0.21 -2.30 16 21 C -0.13 -1.85 8.17 30.95 0.25 -1.60 16 22 C -0.09 -1.21 7.96 30.17 0.24 -0.97 16 23 C -0.11 -4.32 6.13 31.32 0.19 -4.12 16 24 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 25 H 0.04 1.90 7.57 -2.39 -0.02 1.88 16 26 H 0.04 1.93 8.05 -2.39 -0.02 1.91 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 29 H 0.41 11.10 8.28 -92.71 -0.77 10.33 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.06 1.54 7.49 -2.38 -0.02 1.52 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 2.69 7.12 -2.39 -0.02 2.67 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -65.85 312.23 3.13 -62.72 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.27 Total: 18.81 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 2.86 Total: -25.61 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.97 Total: -77.86 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.85 3.13 -62.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296757274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.926 kcal (2) G-P(sol) polarization free energy of solvation -65.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds