Wall clock time and date at job start Mon Mar 30 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47114 * 2 1 4 4 C 1.53001 * 109.47156 * 119.99761 * 2 1 3 5 5 C 1.50699 * 109.47362 * 183.17505 * 4 2 1 6 6 H 1.08002 * 119.99927 * 355.66643 * 5 4 2 7 7 C 1.37876 * 120.00397 * 175.67089 * 5 4 2 8 8 N 1.31519 * 119.99512 * 5.95912 * 7 5 4 9 9 Si 1.86799 * 120.00389 * 185.95975 * 7 5 4 10 10 H 1.48504 * 109.46958 * 94.94129 * 9 7 5 11 11 H 1.48497 * 109.47165 * 214.94257 * 9 7 5 12 12 H 1.48501 * 109.46774 * 334.94418 * 9 7 5 13 13 N 1.46894 * 109.47432 * 239.99958 * 2 1 3 14 14 C 1.47900 * 110.99695 * 308.60226 * 13 2 1 15 15 C 1.54602 * 102.63607 * 94.67094 * 14 13 2 16 16 C 1.51585 * 102.81411 * 25.60552 * 15 14 13 17 17 C 1.37938 * 131.52972 * 163.77961 * 16 15 14 18 18 C 1.38257 * 120.11257 * 180.27868 * 17 16 15 19 19 C 1.38531 * 119.85770 * 0.02562 * 18 17 16 20 20 F 1.35102 * 119.89931 * 179.87079 * 19 18 17 21 21 C 1.38131 * 120.20866 * 359.84005 * 19 18 17 22 22 C 1.38979 * 107.93994 * 343.80194 * 16 15 14 23 23 H 1.09002 * 109.46839 * 185.90845 * 1 2 3 24 24 H 1.09004 * 109.47204 * 305.90550 * 1 2 3 25 25 H 1.09002 * 109.47037 * 65.90826 * 1 2 3 26 26 H 1.09005 * 109.47183 * 303.17468 * 4 2 1 27 27 H 1.09004 * 109.47105 * 63.17519 * 4 2 1 28 28 H 0.97005 * 119.99705 * 179.97438 * 8 7 5 29 29 H 1.09003 * 110.77763 * 212.95045 * 14 13 2 30 30 H 1.08997 * 110.78134 * 336.37719 * 14 13 2 31 31 H 1.08998 * 110.74568 * 143.94024 * 15 14 13 32 32 H 1.09001 * 110.74054 * 267.09433 * 15 14 13 33 33 H 1.08006 * 119.94179 * 0.26352 * 17 16 15 34 34 H 1.08004 * 120.07013 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.90652 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5449 -0.6534 1.2893 6 1 4.0875 -0.2085 0.4682 7 6 4.2293 -1.1595 2.3740 8 7 3.5801 -1.8053 3.3180 9 14 6.0784 -0.9280 2.5027 10 1 6.3708 0.2729 3.3259 11 1 6.6839 -2.1247 3.1403 12 1 6.6504 -0.7481 1.1441 13 7 2.0197 -0.6925 -1.1994 14 6 1.3842 -2.0204 -1.3412 15 6 0.1952 -1.7272 -2.2849 16 6 0.6645 -0.5037 -3.0469 17 6 0.2133 0.0750 -4.2149 18 6 0.8311 1.2078 -4.7114 19 6 1.9053 1.7608 -4.0336 20 9 2.5113 2.8662 -4.5195 21 6 2.3584 1.1859 -2.8622 22 6 1.7376 0.0457 -2.3554 23 1 -0.3633 -1.0222 0.1058 24 1 -0.3634 0.6027 0.8324 25 1 -0.3633 0.4195 -0.9382 26 1 1.6309 -0.2412 2.1384 27 1 1.7239 -1.7640 1.2213 28 1 4.0616 -2.1617 4.0810 29 1 2.0729 -2.7320 -1.7968 30 1 1.0315 -2.3854 -0.3766 31 1 0.0256 -2.5632 -2.9635 32 1 -0.7063 -1.5071 -1.7131 33 1 -0.6239 -0.3577 -4.7425 34 1 0.4775 1.6601 -5.6262 35 1 3.1960 1.6213 -2.3375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298725628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:06 Heat of formation + Delta-G solvation = -8.228303 kcal Electronic energy + Delta-G solvation = -18254.373045 eV Core-core repulsion = 15359.845925 eV Total energy + Delta-G solvation = -2894.527120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.75459 -40.79587 -36.87271 -33.55256 -32.04902 -31.16331 -28.48782 -28.21922 -27.37807 -23.37954 -22.84640 -21.84351 -21.15654 -19.07019 -17.23066 -16.45992 -16.20089 -15.91282 -15.52674 -15.38736 -14.51038 -14.09201 -13.76265 -13.50804 -13.05868 -12.95084 -12.40248 -12.14106 -11.87767 -11.80251 -11.69540 -11.55855 -11.22640 -10.97816 -10.67317 -10.59777 -10.43135 -10.10039 -9.49774 -9.13011 -8.97165 -8.51629 -8.30604 -7.45810 -5.95809 -3.93702 1.29029 1.39608 3.35921 3.42769 3.47919 3.66050 3.95248 4.51565 4.54103 4.75597 5.03752 5.07314 5.20087 5.37295 5.40612 5.42662 5.68832 5.71369 5.78137 5.86426 5.94536 6.08415 6.13121 6.23738 6.31521 6.36302 6.43060 6.49980 6.62494 6.80960 6.93902 7.32035 7.59276 7.69120 7.85104 8.04757 8.48815 9.12324 9.68772 11.16014 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.006593 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.649514 B = 4246.197156 C = 4923.975288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.074 0.926 4 C 0.029 3.971 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.467 5.467 14 C 0.053 3.947 15 C -0.112 4.112 16 C -0.157 4.157 17 C -0.063 4.063 18 C -0.182 4.182 19 C 0.113 3.887 20 F -0.143 7.143 21 C -0.157 4.157 22 C 0.145 3.855 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 2.544 -13.066 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.014 4.014 3 H 0.092 0.908 4 C -0.008 4.008 5 C -0.536 4.536 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.181 5.181 14 C -0.073 4.073 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.082 4.082 18 C -0.202 4.202 19 C 0.093 3.907 20 F -0.121 7.121 21 C -0.178 4.178 22 C 0.046 3.954 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.598 2.410 -12.751 15.038 hybrid contribution 0.457 0.367 -0.036 0.588 sum -7.141 2.777 -12.787 14.907 Atomic orbital electron populations 1.22721 0.98593 1.01841 1.01130 1.22089 0.90734 0.98411 0.90197 0.90754 1.19253 0.96664 0.95243 0.89615 1.21175 0.91446 1.37659 1.03354 0.92002 1.24999 0.98132 0.95398 0.96148 1.69974 1.35736 1.37366 1.11070 0.86618 0.86058 0.77446 0.78137 1.20939 1.21484 1.19836 1.60113 1.55520 1.02159 1.00358 1.23139 0.93128 0.91012 1.00066 1.21926 1.00149 0.94992 0.97921 1.21160 0.97036 1.00027 0.97790 1.20125 0.99117 0.94503 0.94461 1.20856 0.98212 0.98931 1.02193 1.17285 0.94110 0.85190 0.94124 1.91477 1.82534 1.50596 1.87523 1.20385 1.03033 0.97960 0.96467 1.19534 0.91042 0.91983 0.92828 0.92323 0.92267 0.93450 0.95646 0.96200 0.93220 0.89869 0.88552 0.90288 0.89687 0.85677 0.85094 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 7.46 37.16 0.28 -2.75 16 2 C 0.09 1.80 2.24 -67.72 -0.15 1.65 16 3 H 0.07 1.54 8.08 -51.93 -0.42 1.12 16 4 C 0.03 0.72 4.40 -27.88 -0.12 0.59 16 5 C -0.50 -13.71 8.80 -34.44 -0.30 -14.02 16 6 H 0.06 1.72 7.71 -52.49 -0.40 1.32 16 7 C 0.05 1.51 5.45 -17.82 -0.10 1.41 16 8 N -0.90 -26.63 13.30 55.43 0.74 -25.89 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.47 -8.88 4.68 -161.51 -0.76 -9.64 16 14 C 0.05 0.88 6.26 -2.43 -0.02 0.86 16 15 C -0.11 -1.48 6.11 -26.61 -0.16 -1.64 16 16 C -0.16 -2.27 5.30 -104.02 -0.55 -2.82 16 17 C -0.06 -0.79 10.03 -39.68 -0.40 -1.18 16 18 C -0.18 -2.31 10.04 -39.47 -0.40 -2.70 16 19 C 0.11 1.67 7.28 -39.51 -0.29 1.38 16 20 F -0.14 -2.12 17.26 2.25 0.04 -2.08 16 21 C -0.16 -2.59 10.05 -39.20 -0.39 -2.99 16 22 C 0.14 2.46 4.99 -83.42 -0.42 2.05 16 23 H 0.06 0.91 5.79 -51.93 -0.30 0.61 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.73 6.09 -51.93 -0.32 0.41 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.51 6.44 -51.93 -0.33 0.17 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.66 5.31 -51.93 -0.28 1.38 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.06 6.02 -51.93 -0.31 0.75 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 284.99 15.07 4.29 4.29 Total: -1.00 -29.52 284.99 -8.18 -37.71 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.46 Total: -1.06 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.02 Total: -20.18 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.02 Total: -35.53 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.52 -8.18 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298725628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.479 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds