Wall clock time and date at job start Mon Mar 30 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47114 * 2 1 4 4 C 1.53001 * 109.47156 * 119.99761 * 2 1 3 5 5 C 1.50699 * 109.47362 * 183.17505 * 4 2 1 6 6 H 1.08002 * 119.99927 * 355.66643 * 5 4 2 7 7 C 1.37876 * 120.00397 * 175.67089 * 5 4 2 8 8 N 1.31519 * 119.99512 * 5.95912 * 7 5 4 9 9 Si 1.86799 * 120.00389 * 185.95975 * 7 5 4 10 10 H 1.48504 * 109.46958 * 94.94129 * 9 7 5 11 11 H 1.48497 * 109.47165 * 214.94257 * 9 7 5 12 12 H 1.48501 * 109.46774 * 334.94418 * 9 7 5 13 13 N 1.46894 * 109.47432 * 239.99958 * 2 1 3 14 14 C 1.47900 * 110.99695 * 308.60226 * 13 2 1 15 15 C 1.54602 * 102.63607 * 94.67094 * 14 13 2 16 16 C 1.51585 * 102.81411 * 25.60552 * 15 14 13 17 17 C 1.37938 * 131.52972 * 163.77961 * 16 15 14 18 18 C 1.38257 * 120.11257 * 180.27868 * 17 16 15 19 19 C 1.38531 * 119.85770 * 0.02562 * 18 17 16 20 20 F 1.35102 * 119.89931 * 179.87079 * 19 18 17 21 21 C 1.38131 * 120.20866 * 359.84005 * 19 18 17 22 22 C 1.38979 * 107.93994 * 343.80194 * 16 15 14 23 23 H 1.09002 * 109.46839 * 185.90845 * 1 2 3 24 24 H 1.09004 * 109.47204 * 305.90550 * 1 2 3 25 25 H 1.09002 * 109.47037 * 65.90826 * 1 2 3 26 26 H 1.09005 * 109.47183 * 303.17468 * 4 2 1 27 27 H 1.09004 * 109.47105 * 63.17519 * 4 2 1 28 28 H 0.97005 * 119.99705 * 179.97438 * 8 7 5 29 29 H 1.09003 * 110.77763 * 212.95045 * 14 13 2 30 30 H 1.08997 * 110.78134 * 336.37719 * 14 13 2 31 31 H 1.08998 * 110.74568 * 143.94024 * 15 14 13 32 32 H 1.09001 * 110.74054 * 267.09433 * 15 14 13 33 33 H 1.08006 * 119.94179 * 0.26352 * 17 16 15 34 34 H 1.08004 * 120.07013 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.90652 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5449 -0.6534 1.2893 6 1 4.0875 -0.2085 0.4682 7 6 4.2293 -1.1595 2.3740 8 7 3.5801 -1.8053 3.3180 9 14 6.0784 -0.9280 2.5027 10 1 6.3708 0.2729 3.3259 11 1 6.6839 -2.1247 3.1403 12 1 6.6504 -0.7481 1.1441 13 7 2.0197 -0.6925 -1.1994 14 6 1.3842 -2.0204 -1.3412 15 6 0.1952 -1.7272 -2.2849 16 6 0.6645 -0.5037 -3.0469 17 6 0.2133 0.0750 -4.2149 18 6 0.8311 1.2078 -4.7114 19 6 1.9053 1.7608 -4.0336 20 9 2.5113 2.8662 -4.5195 21 6 2.3584 1.1859 -2.8622 22 6 1.7376 0.0457 -2.3554 23 1 -0.3633 -1.0222 0.1058 24 1 -0.3634 0.6027 0.8324 25 1 -0.3633 0.4195 -0.9382 26 1 1.6309 -0.2412 2.1384 27 1 1.7239 -1.7640 1.2213 28 1 4.0616 -2.1617 4.0810 29 1 2.0729 -2.7320 -1.7968 30 1 1.0315 -2.3854 -0.3766 31 1 0.0256 -2.5632 -2.9635 32 1 -0.7063 -1.5071 -1.7131 33 1 -0.6239 -0.3577 -4.7425 34 1 0.4775 1.6601 -5.6262 35 1 3.1960 1.6213 -2.3375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298725628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:06 Heat of formation + Delta-G solvation = -24.782752 kcal Electronic energy + Delta-G solvation = -18255.090899 eV Core-core repulsion = 15359.845925 eV Total energy + Delta-G solvation = -2895.244975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.89762 -42.03987 -38.13172 -35.35954 -33.69297 -32.46935 -29.70661 -29.39736 -29.25806 -25.21134 -24.07292 -23.23302 -22.27335 -20.56506 -18.48309 -18.39776 -17.60459 -17.14183 -16.72782 -16.54257 -16.46540 -15.27644 -15.16521 -14.60763 -14.57991 -14.28195 -13.92392 -13.77532 -13.25815 -13.17789 -13.08073 -12.98042 -12.72178 -12.63691 -12.38113 -12.08972 -11.98929 -11.65837 -11.20689 -11.18824 -10.51332 -10.30467 -9.65313 -8.72665 -8.14891 -6.18937 0.17199 0.27918 1.38718 1.39483 1.51083 2.43895 2.53223 2.72888 3.18955 3.44274 3.64498 3.85591 4.01068 4.09286 4.16093 4.21667 4.38042 4.40728 4.48995 4.63510 4.81750 4.89915 4.93545 5.01933 5.04456 5.12322 5.19170 5.23414 5.30666 5.39407 5.52869 5.66582 5.82647 5.87274 6.14885 6.34929 6.46700 6.93809 7.46896 8.96808 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.006593 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.649514 B = 4246.197156 C = 4923.975288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.508 4.508 6 H 0.052 0.948 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.497 5.497 14 C 0.048 3.952 15 C -0.098 4.098 16 C -0.153 4.153 17 C -0.052 4.052 18 C -0.165 4.165 19 C 0.101 3.899 20 F -0.147 7.147 21 C -0.178 4.178 22 C 0.114 3.886 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.001 0.999 27 H 0.006 0.994 28 H 0.260 0.740 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 2.458 -15.401 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.547 4.547 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.212 5.212 14 C -0.079 4.079 15 C -0.136 4.136 16 C -0.156 4.156 17 C -0.070 4.070 18 C -0.185 4.185 19 C 0.081 3.919 20 F -0.125 7.125 21 C -0.199 4.199 22 C 0.017 3.983 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.019 0.981 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.997 2.332 -15.104 17.735 hybrid contribution 0.894 0.417 0.629 1.170 sum -8.104 2.749 -14.474 16.815 Atomic orbital electron populations 1.22572 0.95701 1.02646 1.02050 1.21711 0.92974 0.96592 0.89164 0.92662 1.19082 0.95128 0.94660 0.91167 1.21465 0.93215 1.37022 1.02980 0.92991 1.25777 1.02570 0.95233 0.95959 1.70077 1.37426 1.38346 1.11654 0.85629 0.80841 0.77635 0.78089 1.20178 1.20840 1.19673 1.59944 1.57221 1.03311 1.00735 1.23144 0.94596 0.89848 1.00291 1.21851 0.98682 0.95519 0.97514 1.21365 0.96008 0.99998 0.98236 1.20562 0.99485 0.93674 0.93302 1.21275 0.96353 0.98326 1.02498 1.17443 0.95058 0.85364 0.93998 1.91465 1.82812 1.50822 1.87441 1.20410 1.03205 0.98670 0.97613 1.19556 0.93044 0.92896 0.92843 0.91367 0.92116 0.91780 0.98123 0.97602 0.93073 0.90192 0.90047 0.87293 0.88481 0.81491 0.81760 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 7.46 71.98 0.54 -4.99 16 2 C 0.10 4.14 2.24 44.92 0.10 4.25 16 3 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 4 C 0.04 1.88 4.40 29.85 0.13 2.01 16 5 C -0.51 -29.04 8.80 25.60 0.23 -28.82 16 6 H 0.05 3.01 7.71 -2.91 -0.02 2.99 16 7 C 0.00 0.08 5.45 84.65 0.46 0.55 16 8 N -0.93 -56.49 13.30 21.45 0.29 -56.21 16 9 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.50 -19.21 4.68 -664.90 -3.11 -22.32 16 14 C 0.05 1.55 6.26 86.66 0.54 2.09 16 15 C -0.10 -2.30 6.11 30.68 0.19 -2.11 16 16 C -0.15 -3.97 5.30 -19.48 -0.10 -4.07 16 17 C -0.05 -1.04 10.03 22.20 0.22 -0.81 16 18 C -0.17 -3.52 10.04 22.34 0.22 -3.30 16 19 C 0.10 2.84 7.28 22.31 0.16 3.00 16 20 F -0.15 -4.21 17.26 44.97 0.78 -3.43 16 21 C -0.18 -5.92 10.05 22.52 0.23 -5.70 16 22 C 0.11 3.83 4.99 38.28 0.19 4.02 16 23 H 0.07 2.06 5.79 -2.39 -0.01 2.04 16 24 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.06 1.85 6.09 -2.39 -0.01 1.84 16 26 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 27 H 0.01 0.31 6.44 -2.38 -0.02 0.29 16 28 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.08 2.84 5.31 -2.39 -0.01 2.83 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 2.08 6.02 -2.39 -0.01 2.06 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -65.59 284.99 4.17 -61.42 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.09 Total: 6.63 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 3.11 Total: -33.88 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -2.83 Total: -78.53 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -65.59 4.17 -61.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298725628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.634 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds