Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.47901 * 110.99672 * 295.00143 * 13 2 1 15 15 C 1.54597 * 102.63700 * 94.66924 * 14 13 2 16 16 C 1.51587 * 102.81246 * 25.60825 * 15 14 13 17 17 C 1.37942 * 131.52866 * 163.76887 * 16 15 14 18 18 C 1.38258 * 120.10850 * 180.27322 * 17 16 15 19 19 C 1.38529 * 119.86094 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.89929 * 179.87297 * 19 18 17 21 21 C 1.38128 * 120.21082 * 359.89262 * 19 18 17 22 22 C 1.38986 * 107.94354 * 343.79747 * 16 15 14 23 23 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 25 25 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 26 26 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 27 27 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 28 28 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 29 29 H 1.09005 * 110.77644 * 212.95559 * 14 13 2 30 30 H 1.08999 * 110.77835 * 336.18749 * 14 13 2 31 31 H 1.08996 * 110.74637 * 143.93745 * 15 14 13 32 32 H 1.09001 * 110.74185 * 267.27802 * 15 14 13 33 33 H 1.07997 * 119.94292 * 0.29058 * 17 16 15 34 34 H 1.08001 * 120.06662 * 180.02562 * 18 17 16 35 35 H 1.08000 * 119.91481 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 1.6461 0.0442 2.4264 15 6 0.3317 -0.6502 2.8508 16 6 0.4703 -2.0322 2.2436 17 6 -0.2038 -3.2106 2.4884 18 6 0.1249 -4.3561 1.7875 19 6 1.1335 -4.3186 0.8386 20 9 1.4570 -5.4381 0.1551 21 6 1.8098 -3.1403 0.5893 22 6 1.4802 -1.9816 1.2900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6055 -0.2619 -2.1370 27 1 1.7517 -1.7715 -1.2055 28 1 6.0246 -1.4984 -3.1541 29 1 2.4104 -0.0718 3.1949 30 1 1.4767 1.0985 2.2078 31 1 0.2604 -0.7111 3.9368 32 1 -0.5313 -0.1305 2.4347 33 1 -0.9898 -3.2382 3.2285 34 1 -0.4036 -5.2782 1.9794 35 1 2.5956 -3.1166 -0.1512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298727161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = -20.704714 kcal Electronic energy + Delta-G solvation = -18720.949314 eV Core-core repulsion = 15825.881176 eV Total energy + Delta-G solvation = -2895.068138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90839 -42.08429 -37.93157 -35.57899 -33.91413 -32.18025 -30.29174 -29.44821 -29.22902 -24.84100 -24.12599 -23.08735 -22.15274 -20.95708 -18.86263 -18.08830 -17.60361 -17.05466 -16.74328 -16.54651 -16.30793 -15.74677 -15.17507 -14.80721 -14.56927 -14.33655 -14.05137 -13.64098 -13.42092 -13.23724 -13.13302 -12.91069 -12.67755 -12.58493 -12.30457 -12.19279 -11.79215 -11.63479 -11.34441 -11.17138 -10.74807 -10.28359 -9.60926 -8.70078 -8.24954 -6.23285 0.18385 0.31896 1.28555 1.30266 1.39552 2.33461 2.55679 2.75468 3.11032 3.45567 3.65750 3.88699 4.04264 4.05838 4.18395 4.23902 4.37012 4.41859 4.49059 4.67508 4.79604 4.84742 4.91642 5.04967 5.07983 5.10931 5.17161 5.21865 5.27450 5.31001 5.47164 5.57873 5.67783 5.85160 6.20696 6.39911 6.42821 6.84376 7.37371 8.92311 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.009870 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.900043 B = 2836.330634 C = 3713.423846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H 0.079 0.921 4 C -0.015 4.015 5 C -0.488 4.488 6 H 0.038 0.962 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.929 3.071 10 H -0.279 1.279 11 H -0.247 1.247 12 H -0.283 1.283 13 N -0.507 5.507 14 C 0.043 3.957 15 C -0.095 4.095 16 C -0.153 4.153 17 C -0.054 4.054 18 C -0.165 4.165 19 C 0.087 3.913 20 F -0.154 7.154 21 C -0.178 4.178 22 C 0.130 3.870 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.017 0.983 28 H 0.261 0.739 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.880 -1.237 12.019 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.003 4.003 3 H 0.097 0.903 4 C -0.053 4.053 5 C -0.527 4.527 6 H 0.057 0.943 7 C -0.191 4.191 8 N -0.595 5.595 9 Si 0.754 3.246 10 H -0.205 1.205 11 H -0.170 1.170 12 H -0.209 1.209 13 N -0.223 5.223 14 C -0.083 4.083 15 C -0.132 4.132 16 C -0.156 4.156 17 C -0.072 4.072 18 C -0.184 4.184 19 C 0.067 3.933 20 F -0.133 7.133 21 C -0.199 4.199 22 C 0.033 3.967 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.137 -1.249 11.807 20.034 hybrid contribution 0.257 -0.790 -1.390 1.619 sum -15.880 -2.039 10.417 19.100 Atomic orbital electron populations 1.22638 0.95339 1.01977 1.03484 1.21654 0.93064 0.97091 0.88517 0.90309 1.19808 0.94921 0.96230 0.94302 1.21241 0.91735 1.32559 1.07139 0.94346 1.25821 0.95399 0.97458 1.00456 1.70055 1.08247 1.47885 1.33360 0.85969 0.80119 0.79313 0.79181 1.20466 1.17032 1.20854 1.59950 1.57703 1.00235 1.04417 1.23303 0.96248 0.98606 0.90188 1.21848 0.98768 0.89931 1.02668 1.21471 0.96032 0.97743 1.00382 1.20569 0.98976 0.89112 0.98551 1.21260 0.98263 1.01708 0.97147 1.17648 0.98594 0.81609 0.95454 1.91440 1.92423 1.50411 1.78982 1.20620 1.03141 0.92027 1.04069 1.19227 0.92187 0.90361 0.94962 0.93465 0.89495 0.91587 0.95995 0.96485 0.92967 0.89741 0.88252 0.86979 0.87850 0.81012 0.81861 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.05 7.89 71.98 0.57 -4.48 16 2 C 0.10 3.87 2.16 44.91 0.10 3.97 16 3 H 0.08 3.01 7.99 -2.39 -0.02 2.99 16 4 C -0.02 -0.73 3.23 29.85 0.10 -0.63 16 5 C -0.49 -28.67 9.39 25.60 0.24 -28.43 16 6 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 7 C 0.00 0.25 5.47 84.65 0.46 0.72 16 8 N -0.95 -62.11 13.96 21.45 0.30 -61.81 16 9 Si 0.93 46.88 27.47 68.60 1.88 48.76 16 10 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 12 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 13 N -0.51 -18.91 4.81 -664.87 -3.20 -22.10 16 14 C 0.04 1.10 6.58 86.65 0.57 1.67 16 15 C -0.09 -1.83 6.18 30.67 0.19 -1.64 16 16 C -0.15 -4.01 5.36 -19.47 -0.10 -4.11 16 17 C -0.05 -1.16 10.03 22.20 0.22 -0.93 16 18 C -0.16 -4.15 10.04 22.34 0.22 -3.93 16 19 C 0.09 3.03 7.28 22.31 0.16 3.19 16 20 F -0.15 -5.72 17.26 44.97 0.78 -4.94 16 21 C -0.18 -7.31 8.27 22.52 0.19 -7.12 16 22 C 0.13 4.70 4.20 38.28 0.16 4.86 16 23 H 0.05 1.43 6.67 -2.39 -0.02 1.42 16 24 H 0.09 1.90 5.23 -2.39 -0.01 1.88 16 25 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 27 H 0.02 0.84 4.51 -2.39 -0.01 0.83 16 28 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 29 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.10 2.20 7.63 -2.39 -0.02 2.18 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 1.66 6.01 -2.39 -0.01 1.65 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.10 5.06 7.12 -2.91 -0.02 5.04 16 Total: -1.00 -72.98 279.54 3.88 -69.11 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.04 Total: 7.85 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.08 Total: -36.87 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.90 Total: -83.91 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.78 Total: -4.94 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.88 Total: 48.76 kcal Total: -72.98 3.88 -69.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298727161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.402 kcal (2) G-P(sol) polarization free energy of solvation -72.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds