Wall clock time and date at job start Mon Mar 30 2020 07:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00218 * 2 1 4 4 H 1.48499 * 109.47379 * 270.00112 * 3 2 1 5 5 H 1.48503 * 109.46706 * 30.00236 * 3 2 1 6 6 H 1.48498 * 109.46685 * 149.99962 * 3 2 1 7 7 C 1.37883 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99709 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99848 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00286 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47441 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47162 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.46972 * 180.02562 * 13 12 11 15 15 C 1.42893 * 113.99793 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.96998 * 119.99805 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.47254 * 60.00200 * 9 7 2 24 24 H 1.08999 * 109.47410 * 299.99871 * 9 7 2 25 25 H 1.00896 * 111.00057 * 303.95528 * 10 9 7 26 26 H 1.09005 * 109.46864 * 60.00322 * 11 10 9 27 27 H 1.08993 * 109.47171 * 300.00596 * 11 10 9 28 28 H 1.09001 * 109.46447 * 60.00273 * 12 11 10 29 29 H 1.09005 * 109.47034 * 300.00583 * 12 11 10 30 30 H 1.09005 * 109.47112 * 60.00208 * 13 12 11 31 31 H 1.08993 * 109.47202 * 300.00311 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00256 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99456 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 5.4697 -2.6184 -0.0022 12 6 5.9410 -4.0740 -0.0027 13 6 7.4704 -4.1148 -0.0032 14 8 7.9106 -5.4743 -0.0043 15 6 9.3316 -5.6251 -0.0043 16 6 9.6812 -7.0910 -0.0048 17 6 9.8415 -7.7629 -1.2023 18 6 10.1628 -9.1074 -1.2027 19 6 10.3242 -9.7799 -0.0058 20 6 10.1586 -9.1093 1.1916 21 6 9.8419 -7.7637 1.1921 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 3.6260 -3.0952 0.7806 26 1 5.8473 -2.1141 0.8874 27 1 5.8459 -2.1147 -0.8925 28 1 5.5634 -4.5777 -0.8924 29 1 5.5647 -4.5780 0.8876 30 1 7.8477 -3.6110 0.8868 31 1 7.8470 -3.6106 -0.8932 32 1 9.7472 -5.1532 0.8861 33 1 9.7472 -5.1518 -0.8939 34 1 9.7159 -7.2374 -2.1374 35 1 10.2876 -9.6324 -2.1382 36 1 10.5755 -10.8303 -0.0063 37 1 10.2804 -9.6357 2.1267 38 1 9.7174 -7.2386 2.1276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306211357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:43 Heat of formation + Delta-G solvation = -52.100619 kcal Electronic energy + Delta-G solvation = -16613.045132 eV Core-core repulsion = 13840.075871 eV Total energy + Delta-G solvation = -2772.969262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29711 -38.84457 -37.42502 -34.88303 -33.44631 -32.20890 -31.79861 -29.17448 -26.98376 -25.14888 -23.48742 -23.01451 -22.54857 -22.03126 -18.97780 -17.84668 -17.50609 -17.34479 -16.75615 -16.39097 -16.21717 -15.66897 -15.52832 -14.85136 -14.64206 -14.41517 -14.25451 -14.06508 -13.64781 -13.36729 -13.20232 -12.90200 -12.55590 -12.27235 -12.08778 -11.97522 -11.86256 -11.78259 -11.75625 -11.48924 -10.81863 -10.58770 -9.83235 -9.77002 -9.17198 -8.31092 -6.36393 0.32974 0.49008 1.35160 1.37127 1.48196 2.33745 2.53004 3.02613 3.06085 3.59239 3.90226 3.91062 4.02521 4.14345 4.25306 4.28728 4.32856 4.35033 4.45354 4.51210 4.61097 4.64095 4.72546 4.75992 4.78621 5.05102 5.07068 5.14656 5.17689 5.25088 5.50671 5.54074 5.60143 5.66126 5.93604 6.08830 6.23496 6.53286 6.63997 6.74668 7.28627 8.85751 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.059684 B = 0.002632 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.021332 B =10634.190545 C =10775.516978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.174 3.826 10 N -0.695 5.695 11 C 0.062 3.938 12 C -0.106 4.106 13 C 0.069 3.931 14 O -0.404 6.404 15 C 0.099 3.901 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.115 4.115 22 H 0.268 0.732 23 H -0.010 1.010 24 H 0.026 0.974 25 H 0.337 0.663 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.711 -14.872 0.952 30.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.054 0.946 9 C 0.046 3.954 10 N -0.326 5.326 11 C -0.067 4.067 12 C -0.144 4.144 13 C -0.008 4.008 14 O -0.324 6.324 15 C 0.024 3.976 16 C -0.110 4.110 17 C -0.133 4.133 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.150 4.150 21 C -0.133 4.133 22 H 0.077 0.923 23 H 0.007 0.993 24 H 0.044 0.956 25 H 0.155 0.845 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 26.391 -14.978 0.266 30.346 hybrid contribution -0.080 1.162 0.844 1.439 sum 26.311 -13.816 1.110 29.739 Atomic orbital electron populations 1.70060 1.08252 1.28327 1.52168 1.25952 0.95724 1.03541 0.94028 0.85594 0.79276 0.77982 0.79319 1.18956 1.20551 1.17249 1.21362 0.91496 0.93469 1.50734 0.94642 1.19763 0.93665 0.87066 0.94937 1.60331 1.07344 1.14890 1.50035 1.21859 0.87964 0.96212 1.00660 1.21335 0.94105 0.95938 1.03007 1.22432 0.94260 0.82691 1.01375 1.87928 1.22053 1.26822 1.95631 1.21430 0.81348 0.92857 1.02009 1.19838 1.01467 0.95457 0.94231 1.21323 0.98807 0.95364 0.97805 1.21476 0.99761 0.94325 0.99421 1.21559 0.98943 1.01095 0.92366 1.21477 0.99769 0.94325 0.99406 1.21318 0.98834 0.95332 0.97786 0.92282 0.99257 0.95575 0.84539 0.94942 0.91015 0.91643 0.91786 0.91994 0.91980 0.91320 0.91351 0.85278 0.83993 0.83735 0.83966 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.00 0.30 5.47 84.66 0.46 0.76 16 3 Si 0.96 44.24 27.47 68.60 1.88 46.13 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.53 -31.60 9.87 25.60 0.25 -31.35 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.17 8.47 4.51 85.55 0.39 8.86 16 10 N -0.70 -29.15 6.49 -517.92 -3.36 -32.51 16 11 C 0.06 1.98 5.69 86.30 0.49 2.47 16 12 C -0.11 -2.91 5.84 30.59 0.18 -2.74 16 13 C 0.07 1.54 5.94 71.98 0.43 1.97 16 14 O -0.40 -9.99 10.33 -148.98 -1.54 -11.53 16 15 C 0.10 1.87 6.06 71.24 0.43 2.30 16 16 C -0.11 -2.16 5.51 -19.86 -0.11 -2.27 16 17 C -0.11 -2.09 9.70 22.27 0.22 -1.87 16 18 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 19 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 20 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 21 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 22 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 23 H -0.01 -0.48 7.20 -2.38 -0.02 -0.50 16 24 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16 25 H 0.34 13.91 8.72 -89.70 -0.78 13.13 16 26 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 33 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -69.78 322.60 1.09 -68.69 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.18 Total: 17.77 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.62 Total: -28.80 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.06 Total: -92.26 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.54 Total: -11.53 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -69.78 1.09 -68.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306211357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.590 kcal (2) G-P(sol) polarization free energy of solvation -69.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds