Wall clock time and date at job start Mon Mar 30 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48504 * 109.47346 * 270.00375 * 3 2 1 5 5 H 1.48501 * 109.46761 * 29.99999 * 3 2 1 6 6 H 1.48497 * 109.47525 * 149.99945 * 3 2 1 7 7 C 1.37874 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47435 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47142 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47142 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47084 * 179.97438 * 12 11 10 14 14 O 1.46303 * 111.00058 * 180.02562 * 13 12 11 15 15 C 1.42893 * 113.99895 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.97003 * 120.00399 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47126 * 59.99713 * 9 7 2 24 24 H 1.08996 * 109.46776 * 300.00172 * 9 7 2 25 25 H 1.08998 * 109.47287 * 60.00251 * 10 9 7 26 26 H 1.08996 * 109.47302 * 299.99878 * 10 9 7 27 27 H 1.08998 * 109.46767 * 60.00002 * 11 10 9 28 28 H 1.09004 * 109.46835 * 299.99862 * 11 10 9 29 29 H 1.09003 * 109.47176 * 59.99841 * 12 11 10 30 30 H 1.09000 * 109.47193 * 300.00432 * 12 11 10 31 31 H 1.00904 * 111.00218 * 303.95603 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00184 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99384 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0031 13 7 1.7400 -7.4222 -0.0019 14 8 2.6607 -8.5592 -0.0031 15 6 2.0119 -9.8324 -0.0025 16 6 3.0498 -10.9250 -0.0045 17 6 3.5276 -11.4266 1.1918 18 6 4.4792 -12.4292 1.1900 19 6 4.9526 -12.9307 -0.0080 20 6 4.4788 -12.4255 -1.2043 21 6 3.5237 -11.4261 -1.2025 22 1 -0.4851 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8877 26 1 2.8712 -3.6040 -0.8922 27 1 0.8526 -5.0447 -0.8905 28 1 0.8546 -5.0450 0.8896 29 1 3.1025 -6.0926 0.8860 30 1 3.0998 -6.0919 -0.8940 31 1 1.1049 -7.4724 0.7807 32 1 1.3881 -9.9228 -0.8919 33 1 1.3902 -9.9230 0.8882 34 1 3.1574 -11.0351 2.1279 35 1 4.8528 -12.8208 2.1246 36 1 5.6958 -13.7144 -0.0093 37 1 4.8518 -12.8142 -2.1403 38 1 3.1499 -11.0348 -2.1371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306940229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:52 Heat of formation + Delta-G solvation = 0.956974 kcal Electronic energy + Delta-G solvation = -16515.711558 eV Core-core repulsion = 13745.043046 eV Total energy + Delta-G solvation = -2770.668512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.53492 -37.11676 -35.37308 -33.26338 -32.07499 -31.17915 -30.71419 -27.52566 -25.83037 -24.04934 -22.85642 -21.69449 -21.28224 -20.10456 -17.20851 -17.07940 -16.16606 -15.95379 -15.68175 -15.27163 -14.68487 -14.39224 -14.21441 -13.69226 -13.41466 -13.19910 -12.81531 -12.63634 -12.28031 -11.74242 -11.67688 -11.39004 -11.23395 -11.04708 -10.75040 -10.54406 -10.47086 -10.35877 -9.66633 -9.31396 -9.19591 -9.12772 -9.03537 -8.64185 -8.33091 -5.98229 -4.00461 0.96377 1.12828 2.68068 3.33248 3.39259 3.42860 3.56913 4.47476 4.55620 4.57153 4.72483 4.84999 5.00491 5.07436 5.19281 5.32873 5.36897 5.38810 5.42173 5.55430 5.69279 5.76610 5.81690 6.01058 6.15907 6.21089 6.21858 6.33246 6.42720 6.63525 6.69954 6.78356 6.90827 7.15114 7.24134 7.69824 7.84481 8.02246 8.44949 9.06823 9.63493 11.13146 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.060883 B = 0.002480 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.791141 B =11287.841677 C =11419.966661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.111 4.111 12 C 0.051 3.949 13 N -0.506 5.506 14 O -0.253 6.253 15 C 0.101 3.899 16 C -0.087 4.087 17 C -0.100 4.100 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.096 4.096 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.015 0.985 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.332 0.668 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -25.691 0.879 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.150 4.150 12 C -0.078 4.078 13 N -0.176 5.176 14 O -0.260 6.260 15 C 0.024 3.976 16 C -0.089 4.089 17 C -0.119 4.119 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.114 4.114 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.909 -25.562 0.189 26.237 hybrid contribution 0.542 0.947 1.034 1.503 sum 6.451 -24.615 1.223 25.476 Atomic orbital electron populations 1.69962 1.06052 1.26562 1.50976 1.25033 0.94859 0.99270 0.95394 0.86596 0.79833 0.83482 0.78106 1.20651 1.21243 1.19907 1.21274 0.93052 0.91137 1.50409 0.92707 1.19098 0.93999 0.91264 0.97260 1.21591 0.99150 0.93267 1.00500 1.21628 0.97711 0.93212 1.02418 1.22346 0.97540 0.85970 1.01959 1.66812 1.10183 0.94631 1.45990 1.90839 1.26719 1.11373 1.97098 1.21181 0.93269 0.81798 1.01350 1.19652 0.98759 0.96828 0.93627 1.21103 0.96691 0.96479 0.97588 1.21150 0.97571 0.97328 0.98235 1.21207 0.99718 0.99864 0.92647 1.21175 0.97492 0.97298 0.98254 1.21135 0.96377 0.96157 0.97744 0.93027 0.96495 0.96644 0.93391 0.93080 0.91191 0.92355 0.94144 0.89905 0.85302 0.91608 0.92696 0.85987 0.85925 0.86035 0.85842 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.11 -1.87 5.47 -26.73 -0.15 -2.02 16 12 C 0.05 0.77 6.22 -3.83 -0.02 0.74 16 13 N -0.51 -7.02 7.33 -10.37 -0.08 -7.10 16 14 O -0.25 -3.58 11.27 -13.92 -0.16 -3.74 16 15 C 0.10 1.10 6.51 36.01 0.23 1.34 16 16 C -0.09 -0.92 5.51 -104.62 -0.58 -1.49 16 17 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 18 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 19 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 20 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 21 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.33 3.96 8.92 -39.29 -0.35 3.61 16 32 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -31.68 327.26 -8.97 -40.66 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.23 Total: -1.14 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.16 Total: -23.98 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.66 Total: -33.57 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.16 Total: -3.74 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.68 -8.97 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306940229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.613 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds