Wall clock time and date at job start Mon Mar 30 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48504 * 109.47346 * 270.00375 * 3 2 1 5 5 H 1.48501 * 109.46761 * 29.99999 * 3 2 1 6 6 H 1.48497 * 109.47525 * 149.99945 * 3 2 1 7 7 C 1.37874 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47435 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47142 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47142 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47084 * 179.97438 * 12 11 10 14 14 O 1.46303 * 111.00058 * 180.02562 * 13 12 11 15 15 C 1.42893 * 113.99895 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.97003 * 120.00399 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47126 * 59.99713 * 9 7 2 24 24 H 1.08996 * 109.46776 * 300.00172 * 9 7 2 25 25 H 1.08998 * 109.47287 * 60.00251 * 10 9 7 26 26 H 1.08996 * 109.47302 * 299.99878 * 10 9 7 27 27 H 1.08998 * 109.46767 * 60.00002 * 11 10 9 28 28 H 1.09004 * 109.46835 * 299.99862 * 11 10 9 29 29 H 1.09003 * 109.47176 * 59.99841 * 12 11 10 30 30 H 1.09000 * 109.47193 * 300.00432 * 12 11 10 31 31 H 1.00904 * 111.00218 * 303.95603 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00184 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99384 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0031 13 7 1.7400 -7.4222 -0.0019 14 8 2.6607 -8.5592 -0.0031 15 6 2.0119 -9.8324 -0.0025 16 6 3.0498 -10.9250 -0.0045 17 6 3.5276 -11.4266 1.1918 18 6 4.4792 -12.4292 1.1900 19 6 4.9526 -12.9307 -0.0080 20 6 4.4788 -12.4255 -1.2043 21 6 3.5237 -11.4261 -1.2025 22 1 -0.4851 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8877 26 1 2.8712 -3.6040 -0.8922 27 1 0.8526 -5.0447 -0.8905 28 1 0.8546 -5.0450 0.8896 29 1 3.1025 -6.0926 0.8860 30 1 3.0998 -6.0919 -0.8940 31 1 1.1049 -7.4724 0.7807 32 1 1.3881 -9.9228 -0.8919 33 1 1.3902 -9.9230 0.8882 34 1 3.1574 -11.0351 2.1279 35 1 4.8528 -12.8208 2.1246 36 1 5.6958 -13.7144 -0.0093 37 1 4.8518 -12.8142 -2.1403 38 1 3.1499 -11.0348 -2.1371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306940229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:52 Heat of formation + Delta-G solvation = -16.841659 kcal Electronic energy + Delta-G solvation = -16516.483365 eV Core-core repulsion = 13745.043046 eV Total energy + Delta-G solvation = -2771.440318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20938 -38.19563 -36.83730 -35.04296 -33.35025 -32.02201 -31.82075 -29.16893 -26.76867 -25.78280 -23.50545 -23.04750 -22.21475 -21.78405 -18.51936 -18.06621 -17.80450 -16.96542 -16.56564 -16.39047 -16.35414 -15.64408 -15.20852 -14.59455 -14.48067 -14.23909 -14.18078 -13.89967 -13.58062 -13.33212 -13.15595 -12.86256 -12.42717 -12.36835 -12.18699 -12.01418 -11.93868 -11.49646 -11.33210 -11.31364 -11.08278 -10.54827 -9.85498 -9.80961 -9.72518 -8.19700 -6.30707 0.26601 0.47069 1.40231 1.41680 1.52737 1.67619 2.41529 2.87815 3.13302 3.81712 3.89161 3.93401 4.09709 4.11970 4.23429 4.29184 4.31279 4.45490 4.49716 4.56338 4.63515 4.75065 4.83186 4.90349 5.04531 5.13039 5.14717 5.25370 5.28375 5.51705 5.53721 5.58308 5.59192 5.63958 5.77474 5.87174 6.06771 6.23753 6.26898 6.86642 7.38460 8.92126 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.060883 B = 0.002480 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.791141 B =11287.841677 C =11419.966661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.099 4.099 12 C 0.062 3.938 13 N -0.509 5.509 14 O -0.269 6.269 15 C 0.100 3.900 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.113 4.113 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.007 1.007 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.343 0.657 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.369 -26.562 1.161 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.137 4.137 12 C -0.067 4.067 13 N -0.180 5.180 14 O -0.278 6.278 15 C 0.023 3.977 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.131 4.131 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.357 -26.451 0.474 27.459 hybrid contribution 0.078 1.123 0.946 1.471 sum 7.435 -25.327 1.421 26.434 Atomic orbital electron populations 1.70092 1.07778 1.27766 1.51744 1.26002 0.95815 1.03425 0.94795 0.85442 0.78647 0.78417 0.78508 1.19763 1.20688 1.18780 1.21736 0.93576 0.92527 1.50427 0.92237 1.19023 0.94482 0.93020 0.94945 1.21382 0.98068 0.93117 1.00819 1.21391 0.97622 0.92164 1.02546 1.22068 0.96767 0.85991 1.01876 1.66672 1.10095 0.94356 1.46852 1.90810 1.27451 1.12269 1.97263 1.21323 0.93652 0.80621 1.02078 1.19750 0.99537 0.97233 0.94420 1.21312 0.97213 0.97058 0.97616 1.21477 0.97045 0.96843 0.99486 1.21579 0.99760 1.00049 0.92276 1.21482 0.96979 0.96824 0.99542 1.21324 0.97091 0.96922 0.97733 0.92766 0.98938 0.98833 0.92881 0.92856 0.91640 0.91721 0.93854 0.90408 0.84037 0.91477 0.91317 0.85250 0.83804 0.83531 0.83849 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.44 0.28 -57.14 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.91 5.15 30.60 0.16 -3.76 16 11 C -0.10 -3.28 5.47 30.60 0.17 -3.11 16 12 C 0.06 1.82 6.22 86.30 0.54 2.35 16 13 N -0.51 -13.62 7.33 -186.73 -1.37 -14.99 16 14 O -0.27 -7.43 11.27 -50.17 -0.57 -8.00 16 15 C 0.10 2.12 6.51 71.24 0.46 2.58 16 16 C -0.11 -2.20 5.51 -19.86 -0.11 -2.31 16 17 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 18 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 19 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 20 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 21 C -0.11 -2.12 9.70 22.27 0.22 -1.91 16 22 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 23 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.34 7.79 8.92 -89.69 -0.80 6.99 16 32 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 33 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -67.43 327.26 3.76 -63.68 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.22 Total: 12.23 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.16 Total: -42.52 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.08 Total: -72.13 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.57 Total: -8.00 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.43 3.76 -63.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306940229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.835 kcal (2) G-P(sol) polarization free energy of solvation -67.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds