Wall clock time and date at job start Mon Mar 30 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47240 * 270.00001 * 3 2 1 5 5 H 1.48510 * 109.47151 * 29.99707 * 3 2 1 6 6 H 1.48496 * 109.47143 * 149.99412 * 3 2 1 7 7 C 1.38812 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00123 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00587 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47674 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47523 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47162 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46972 * 180.02562 * 13 12 11 15 15 C 1.42893 * 113.99793 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.96997 * 120.00023 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99776 * 0.02562 * 9 7 2 24 24 H 1.09005 * 109.46938 * 60.00026 * 10 9 7 25 25 H 1.09005 * 109.46882 * 300.00467 * 10 9 7 26 26 H 1.09005 * 109.46936 * 60.00001 * 11 10 9 27 27 H 1.08993 * 109.47017 * 300.00325 * 11 10 9 28 28 H 1.09001 * 109.46447 * 60.00134 * 12 11 10 29 29 H 1.09005 * 109.47034 * 300.00445 * 12 11 10 30 30 H 1.09005 * 109.47112 * 60.00208 * 13 12 11 31 31 H 1.08993 * 109.47202 * 300.00311 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00256 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99456 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0024 12 6 6.3814 -3.5164 0.0030 13 6 7.8856 -3.2368 0.0036 14 8 8.6001 -4.4743 0.0036 15 6 10.0212 -4.3249 0.0048 16 6 10.6694 -5.6855 0.0053 17 6 10.9676 -6.3095 -1.1916 18 6 11.5626 -7.5572 -1.1911 19 6 11.8599 -8.1807 0.0063 20 6 11.5568 -7.5591 1.2032 21 6 10.9660 -6.3093 1.2027 22 1 -0.4850 0.8400 -0.0004 23 1 3.8646 -0.3622 0.0014 24 1 3.8491 -3.0422 -0.8892 25 1 3.8484 -3.0427 0.8908 26 1 5.8790 -1.6202 0.8928 27 1 5.8804 -1.6194 -0.8871 28 1 6.1188 -4.0878 -0.8873 29 1 6.1173 -4.0880 0.8928 30 1 8.1485 -2.6650 0.8937 31 1 8.1493 -2.6654 -0.8862 32 1 10.3283 -3.7763 0.8953 33 1 10.3296 -3.7756 -0.8847 34 1 10.7357 -5.8221 -2.1271 35 1 11.7952 -8.0449 -2.1262 36 1 12.3251 -9.1554 0.0066 37 1 11.7851 -8.0481 2.1387 38 1 10.7337 -5.8215 2.1378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306982232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:36 Heat of formation + Delta-G solvation = -22.749359 kcal Electronic energy + Delta-G solvation = -16632.950861 eV Core-core repulsion = 13861.254366 eV Total energy + Delta-G solvation = -2771.696495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64977 -37.96290 -35.77177 -33.42397 -32.09425 -31.19757 -30.88899 -27.74225 -25.98003 -23.57108 -22.87974 -21.73120 -21.36500 -20.86138 -17.55007 -17.18659 -16.50974 -16.44936 -15.70020 -15.34282 -14.64981 -14.39450 -14.30454 -13.72959 -13.70235 -13.09687 -12.87322 -12.78059 -12.62327 -12.01973 -11.65024 -11.58672 -11.30025 -11.24132 -10.89246 -10.88205 -10.49100 -10.44821 -10.10184 -9.74570 -9.56483 -9.21264 -9.13116 -8.86472 -7.19941 -5.74089 -3.09383 0.96846 1.10985 3.27661 3.39068 3.41725 3.46541 3.83944 4.51473 4.54158 4.61523 4.70932 4.81817 4.94209 5.03660 5.06801 5.13413 5.26131 5.31865 5.35132 5.40669 5.51016 5.62711 5.66627 5.74006 5.83886 6.02283 6.14172 6.16064 6.19500 6.20142 6.30375 6.34845 6.68069 6.79037 6.82773 7.06264 8.03026 8.45221 9.24529 9.96946 10.17236 11.44481 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.060133 B = 0.002659 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.519455 B =10529.203109 C =10669.025346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.759 5.759 10 C 0.157 3.843 11 C -0.127 4.127 12 C -0.113 4.113 13 C 0.062 3.938 14 O -0.382 6.382 15 C 0.102 3.898 16 C -0.089 4.089 17 C -0.099 4.099 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.099 4.099 22 H 0.259 0.741 23 H 0.360 0.640 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.423 -12.897 0.011 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.194 4.194 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.404 5.404 10 C 0.030 3.970 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.014 4.014 14 O -0.302 6.302 15 C 0.025 3.975 16 C -0.089 4.089 17 C -0.117 4.117 18 C -0.142 4.142 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.117 4.117 22 H 0.069 0.931 23 H 0.193 0.807 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 27.086 -13.155 0.014 30.111 hybrid contribution 0.643 1.475 0.009 1.609 sum 27.728 -11.679 0.022 30.088 Atomic orbital electron populations 1.69707 1.05089 1.25787 1.57774 1.24695 0.95290 0.97264 1.02172 0.86509 0.79177 0.84880 0.77750 1.21084 1.21719 1.20359 1.19091 0.80692 0.94787 1.42748 0.89207 1.42735 1.04096 1.02353 1.91229 1.20602 0.88425 0.89216 0.98719 1.21695 0.96521 0.96281 1.02000 1.21433 0.91563 0.98532 1.03535 1.22613 0.92971 0.85738 1.00119 1.87967 1.16394 1.30405 1.95424 1.21282 0.81816 0.93503 1.00886 1.19658 0.99329 0.96266 0.93605 1.21099 0.97805 0.95179 0.97634 1.21162 0.99466 0.95361 0.98237 1.21204 0.99795 0.99843 0.92649 1.21162 0.99473 0.95343 0.98242 1.21098 0.97834 0.95157 0.97629 0.93087 0.80731 0.95441 0.95503 0.91953 0.91936 0.91009 0.91010 0.93308 0.93308 0.92518 0.92511 0.85884 0.85903 0.86043 0.85902 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.99 13.97 55.49 0.78 -29.21 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 3 Si 0.89 22.51 27.74 -169.99 -4.71 17.79 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 N -0.76 -18.78 5.41 -59.91 -0.32 -19.11 16 10 C 0.16 3.15 6.26 -4.05 -0.03 3.13 16 11 C -0.13 -1.95 5.33 -26.73 -0.14 -2.10 16 12 C -0.11 -1.49 5.58 -26.73 -0.15 -1.64 16 13 C 0.06 0.72 5.94 37.16 0.22 0.94 16 14 O -0.38 -4.78 10.33 -35.23 -0.36 -5.14 16 15 C 0.10 0.99 6.06 36.01 0.22 1.21 16 16 C -0.09 -0.88 5.51 -104.62 -0.58 -1.46 16 17 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 18 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 19 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 20 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 21 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 22 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 23 H 0.36 8.60 5.53 -40.82 -0.23 8.37 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -33.26 321.87 -8.60 -41.86 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.15 Total: 2.93 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.67 Total: -13.96 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.45 Total: -48.32 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.36 Total: -5.14 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.26 -8.60 -41.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.107 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds