Wall clock time and date at job start Mon Mar 30 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47240 * 270.00001 * 3 2 1 5 5 H 1.48510 * 109.47151 * 29.99707 * 3 2 1 6 6 H 1.48496 * 109.47143 * 149.99412 * 3 2 1 7 7 C 1.38812 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00123 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00587 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47674 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47523 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47162 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46972 * 180.02562 * 13 12 11 15 15 C 1.42893 * 113.99793 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.96997 * 120.00023 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99776 * 0.02562 * 9 7 2 24 24 H 1.09005 * 109.46938 * 60.00026 * 10 9 7 25 25 H 1.09005 * 109.46882 * 300.00467 * 10 9 7 26 26 H 1.09005 * 109.46936 * 60.00001 * 11 10 9 27 27 H 1.08993 * 109.47017 * 300.00325 * 11 10 9 28 28 H 1.09001 * 109.46447 * 60.00134 * 12 11 10 29 29 H 1.09005 * 109.47034 * 300.00445 * 12 11 10 30 30 H 1.09005 * 109.47112 * 60.00208 * 13 12 11 31 31 H 1.08993 * 109.47202 * 300.00311 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00256 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99456 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0024 12 6 6.3814 -3.5164 0.0030 13 6 7.8856 -3.2368 0.0036 14 8 8.6001 -4.4743 0.0036 15 6 10.0212 -4.3249 0.0048 16 6 10.6694 -5.6855 0.0053 17 6 10.9676 -6.3095 -1.1916 18 6 11.5626 -7.5572 -1.1911 19 6 11.8599 -8.1807 0.0063 20 6 11.5568 -7.5591 1.2032 21 6 10.9660 -6.3093 1.2027 22 1 -0.4850 0.8400 -0.0004 23 1 3.8646 -0.3622 0.0014 24 1 3.8491 -3.0422 -0.8892 25 1 3.8484 -3.0427 0.8908 26 1 5.8790 -1.6202 0.8928 27 1 5.8804 -1.6194 -0.8871 28 1 6.1188 -4.0878 -0.8873 29 1 6.1173 -4.0880 0.8928 30 1 8.1485 -2.6650 0.8937 31 1 8.1493 -2.6654 -0.8862 32 1 10.3283 -3.7763 0.8953 33 1 10.3296 -3.7756 -0.8847 34 1 10.7357 -5.8221 -2.1271 35 1 11.7952 -8.0449 -2.1262 36 1 12.3251 -9.1554 0.0066 37 1 11.7851 -8.0481 2.1387 38 1 10.7337 -5.8215 2.1378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306982232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:36 Heat of formation + Delta-G solvation = -43.052997 kcal Electronic energy + Delta-G solvation = -16633.831293 eV Core-core repulsion = 13861.254366 eV Total energy + Delta-G solvation = -2772.576927 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29391 -38.82016 -37.39007 -34.99938 -33.30344 -32.46727 -31.79846 -29.12827 -26.85256 -25.22529 -23.48701 -23.08854 -22.45873 -21.98749 -19.65683 -17.83128 -17.39256 -17.31600 -16.67530 -16.31569 -16.25230 -15.79765 -15.41422 -14.93509 -14.82358 -14.30487 -13.97656 -13.91623 -13.66591 -13.45810 -12.97802 -12.72050 -12.59854 -12.42948 -12.10426 -11.93270 -11.89615 -11.80518 -11.69833 -11.64659 -10.98452 -10.57298 -9.83266 -9.76881 -9.32638 -8.04591 -5.39288 0.33137 0.48979 1.37345 1.42199 1.49724 2.47911 2.55572 3.08647 3.26253 3.66749 3.89074 3.90829 4.01660 4.10111 4.14987 4.28553 4.33061 4.40522 4.44159 4.45191 4.55873 4.64996 4.74684 4.76115 4.84991 4.98446 5.07054 5.08777 5.14797 5.38776 5.38786 5.54126 5.60198 5.66178 5.73205 6.08847 6.19399 6.25022 7.05854 7.81413 8.02235 9.16988 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.060133 B = 0.002659 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.519455 B =10529.203109 C =10669.025346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.242 4.242 8 H 0.053 0.947 9 N -0.761 5.761 10 C 0.151 3.849 11 C -0.112 4.112 12 C -0.106 4.106 13 C 0.065 3.935 14 O -0.404 6.404 15 C 0.099 3.901 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.115 4.115 22 H 0.259 0.741 23 H 0.368 0.632 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.191 -12.460 0.028 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.373 4.373 8 H 0.071 0.929 9 N -0.407 5.407 10 C 0.025 3.975 11 C -0.150 4.150 12 C -0.145 4.145 13 C -0.011 4.011 14 O -0.325 6.325 15 C 0.024 3.976 16 C -0.110 4.110 17 C -0.133 4.133 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.150 4.150 21 C -0.133 4.133 22 H 0.068 0.932 23 H 0.201 0.799 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 29.905 -12.748 0.032 32.509 hybrid contribution -0.234 1.177 -0.001 1.200 sum 29.672 -11.571 0.031 31.848 Atomic orbital electron populations 1.69902 1.07256 1.26885 1.59455 1.25632 0.96291 1.01697 1.02342 0.85298 0.78659 0.78879 0.78283 1.20141 1.22036 1.17300 1.19067 0.82862 0.93546 1.41832 0.92911 1.42739 1.02539 1.04372 1.91062 1.20795 0.91329 0.87289 0.98070 1.21530 0.92937 0.97625 1.02931 1.21313 0.92883 0.97140 1.03126 1.22541 0.91522 0.85735 1.01306 1.87923 1.17954 1.30975 1.95627 1.21419 0.80382 0.93894 1.01946 1.19840 1.00159 0.96749 0.94212 1.21320 0.98284 0.95872 0.97806 1.21475 0.98994 0.95116 0.99395 1.21557 0.99312 1.00740 0.92378 1.21475 0.99004 0.95100 0.99402 1.21319 0.98314 0.95852 0.97801 0.93213 0.79881 0.95949 0.96063 0.91044 0.90908 0.91468 0.91503 0.92125 0.92094 0.91423 0.91406 0.85248 0.84000 0.83769 0.84002 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.45 13.97 21.65 0.30 -64.15 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.96 45.87 27.74 68.60 1.90 47.77 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.25 -10.56 6.52 99.48 0.65 -9.92 16 7 C -0.24 -14.38 10.47 84.03 0.88 -13.50 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 9 N -0.76 -36.88 5.41 -343.46 -1.86 -38.74 16 10 C 0.15 5.93 6.26 86.38 0.54 6.47 16 11 C -0.11 -3.20 5.33 30.59 0.16 -3.03 16 12 C -0.11 -2.63 5.58 30.59 0.17 -2.46 16 13 C 0.07 1.36 5.94 71.98 0.43 1.78 16 14 O -0.40 -9.51 10.33 -148.98 -1.54 -11.04 16 15 C 0.10 1.80 6.06 71.24 0.43 2.23 16 16 C -0.11 -2.08 5.51 -19.86 -0.11 -2.18 16 17 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 18 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 19 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 20 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 21 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 22 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 23 H 0.37 16.59 5.53 -92.71 -0.51 16.08 16 24 H 0.02 0.90 8.14 -2.38 -0.02 0.89 16 25 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 33 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -71.81 321.87 3.33 -68.48 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.44 Total: 20.48 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.07 Total: -22.80 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -1.55 Total: -102.89 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.54 Total: -11.04 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Total: -71.81 3.33 -68.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.423 kcal (2) G-P(sol) polarization free energy of solvation -71.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds