Wall clock time and date at job start Mon Mar 30 2020 07:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00093 * 2 1 4 4 H 1.48499 * 109.46859 * 269.99620 * 3 2 1 5 5 H 1.48505 * 109.46872 * 29.99694 * 3 2 1 6 6 H 1.48499 * 109.46990 * 149.99678 * 3 2 1 7 7 C 1.37879 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00473 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99621 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46968 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.47238 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00208 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47419 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46972 * 64.99963 * 13 12 11 15 15 C 1.42893 * 113.99793 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.97001 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47488 * 60.00212 * 9 7 2 24 24 H 1.09006 * 109.47493 * 300.00046 * 9 7 2 25 25 H 1.09002 * 109.47593 * 60.00036 * 10 9 7 26 26 H 1.09002 * 109.47318 * 299.99930 * 10 9 7 27 27 H 1.00898 * 110.99848 * 303.95166 * 11 10 9 28 28 H 1.09006 * 109.46861 * 59.99592 * 12 11 10 29 29 H 1.08996 * 109.47132 * 300.00159 * 12 11 10 30 30 H 1.09005 * 109.47112 * 305.00032 * 13 12 11 31 31 H 1.08993 * 109.47202 * 185.00135 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00256 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99456 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4906 -2.6365 0.0022 12 6 6.0171 -4.0080 0.0027 13 6 7.5465 -3.9672 0.0033 14 8 8.0069 -3.3850 1.2244 15 6 9.4296 -3.2988 1.3270 16 6 9.8011 -2.6725 2.6464 17 6 10.0007 -3.4696 3.7580 18 6 10.3420 -2.8951 4.9681 19 6 10.4843 -1.5236 5.0665 20 6 10.2795 -0.7261 3.9562 21 6 9.9428 -1.3009 2.7449 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8753 -0.6804 -0.8889 25 1 3.6586 -3.1502 -0.8892 26 1 3.6579 -3.1506 0.8907 27 1 5.8528 -2.1102 -0.7787 28 1 5.6682 -4.5314 -0.8875 29 1 5.6668 -4.5312 0.8924 30 1 7.8943 -3.3684 -0.8386 31 1 7.9370 -4.9808 -0.0859 32 1 9.8162 -2.6859 0.5126 33 1 9.8596 -4.2985 1.2651 34 1 9.8899 -4.5412 3.6811 35 1 10.4975 -3.5178 5.8367 36 1 10.7514 -1.0749 6.0119 37 1 10.3864 0.3458 4.0340 38 1 9.7876 -0.6783 1.8762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307011802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:48 Heat of formation + Delta-G solvation = -28.946177 kcal Electronic energy + Delta-G solvation = -17062.597020 eV Core-core repulsion = 14290.631810 eV Total energy + Delta-G solvation = -2771.965210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47076 -37.85190 -35.81563 -33.01622 -32.08053 -31.01926 -30.53225 -27.85796 -25.85404 -23.77872 -22.70523 -21.76572 -21.38448 -20.28673 -17.09391 -16.75944 -16.73489 -16.07042 -15.57604 -14.97501 -14.90079 -14.24054 -14.09289 -13.60864 -13.45446 -13.22072 -12.95905 -12.56002 -12.48272 -12.25912 -11.91233 -11.34403 -11.18191 -11.11908 -10.94878 -10.91036 -10.02263 -9.82718 -9.72270 -9.55499 -9.17999 -9.03025 -8.95044 -8.49421 -7.83075 -6.00463 -3.98435 1.15017 1.29180 3.35484 3.42888 3.45721 3.50564 4.03768 4.50623 4.64109 4.68327 4.70923 4.87899 4.98108 5.09813 5.17726 5.24661 5.29124 5.34311 5.42195 5.49101 5.52659 5.71594 5.84164 5.91457 6.02207 6.25855 6.31535 6.32644 6.37789 6.48123 6.83129 6.85988 7.16027 7.25214 7.43325 7.68457 7.82124 7.97307 8.57681 9.03761 9.62281 11.12945 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.004025 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.745980 B = 6954.368496 C = 7823.703295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.686 5.686 12 C 0.060 3.940 13 C 0.066 3.934 14 O -0.360 6.360 15 C 0.100 3.900 16 C -0.086 4.086 17 C -0.100 4.100 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.095 4.095 22 H 0.263 0.737 23 H 0.026 0.974 24 H 0.008 0.992 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.332 0.668 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.177 -6.797 4.592 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.055 4.055 11 N -0.317 5.317 12 C -0.070 4.070 13 C -0.011 4.011 14 O -0.279 6.279 15 C 0.023 3.977 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.144 4.144 19 C -0.135 4.135 20 C -0.141 4.141 21 C -0.113 4.113 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.026 0.974 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.935 -6.559 5.425 25.403 hybrid contribution 0.236 0.532 -1.145 1.285 sum 24.171 -6.027 4.279 25.276 Atomic orbital electron populations 1.69920 1.06323 1.26878 1.51301 1.25008 0.94729 0.99215 0.94496 0.86749 0.80586 0.83419 0.78421 1.20422 1.21432 1.18687 1.21090 0.89448 0.94503 1.50852 0.91133 1.19542 0.96565 0.91915 0.96724 1.21961 0.84083 1.00046 0.99362 1.60523 1.09663 1.11932 1.49570 1.21943 0.92102 0.91987 1.00990 1.22570 0.95292 0.96333 0.86882 1.88154 1.19024 1.82715 1.38050 1.21276 0.83337 0.98835 0.94208 1.19617 1.00234 0.93847 0.94912 1.21050 0.98630 0.99802 0.92351 1.21126 1.00565 0.95158 0.97531 1.21184 0.99869 0.93944 0.98541 1.21166 1.00100 0.99947 0.92926 1.21106 0.97915 0.94197 0.98130 0.92768 0.95578 0.97380 0.96188 0.91728 0.85059 0.94231 0.90385 0.93570 0.93367 0.92745 0.92961 0.86075 0.86045 0.86128 0.85922 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.55 5.62 -3.82 -0.02 1.53 16 11 N -0.69 -12.28 6.45 -113.78 -0.73 -13.02 16 12 C 0.06 0.85 6.07 -3.83 -0.02 0.83 16 13 C 0.07 0.80 6.22 37.16 0.23 1.03 16 14 O -0.36 -5.16 10.27 -35.23 -0.36 -5.52 16 15 C 0.10 1.11 6.06 36.01 0.22 1.33 16 16 C -0.09 -1.01 5.51 -104.62 -0.58 -1.59 16 17 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 18 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 19 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 20 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 21 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 22 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 23 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 24 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.33 5.54 8.73 -39.29 -0.34 5.19 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -33.24 322.48 -9.00 -42.25 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.19 Total: 0.27 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.68 Total: -18.83 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.04 Total: -40.77 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.36 Total: -5.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.24 -9.00 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307011802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.300 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds