Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00093 * 2 1 4 4 H 1.48499 * 109.46859 * 269.99620 * 3 2 1 5 5 H 1.48505 * 109.46872 * 29.99694 * 3 2 1 6 6 H 1.48499 * 109.46990 * 149.99678 * 3 2 1 7 7 C 1.37879 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00473 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99621 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46968 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.47238 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00208 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47419 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46972 * 64.99963 * 13 12 11 15 15 C 1.42893 * 113.99793 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 89.99993 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97930 * 16 15 14 22 22 H 0.97001 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47488 * 60.00212 * 9 7 2 24 24 H 1.09006 * 109.47493 * 300.00046 * 9 7 2 25 25 H 1.09002 * 109.47593 * 60.00036 * 10 9 7 26 26 H 1.09002 * 109.47318 * 299.99930 * 10 9 7 27 27 H 1.00898 * 110.99848 * 303.95166 * 11 10 9 28 28 H 1.09006 * 109.46861 * 59.99592 * 12 11 10 29 29 H 1.08996 * 109.47132 * 300.00159 * 12 11 10 30 30 H 1.09005 * 109.47112 * 305.00032 * 13 12 11 31 31 H 1.08993 * 109.47202 * 185.00135 * 13 12 11 32 32 H 1.09005 * 109.47744 * 60.00256 * 15 14 13 33 33 H 1.09000 * 109.47353 * 299.99456 * 15 14 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 38 38 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4906 -2.6365 0.0022 12 6 6.0171 -4.0080 0.0027 13 6 7.5465 -3.9672 0.0033 14 8 8.0069 -3.3850 1.2244 15 6 9.4296 -3.2988 1.3270 16 6 9.8011 -2.6725 2.6464 17 6 10.0007 -3.4696 3.7580 18 6 10.3420 -2.8951 4.9681 19 6 10.4843 -1.5236 5.0665 20 6 10.2795 -0.7261 3.9562 21 6 9.9428 -1.3009 2.7449 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8753 -0.6804 -0.8889 25 1 3.6586 -3.1502 -0.8892 26 1 3.6579 -3.1506 0.8907 27 1 5.8528 -2.1102 -0.7787 28 1 5.6682 -4.5314 -0.8875 29 1 5.6668 -4.5312 0.8924 30 1 7.8943 -3.3684 -0.8386 31 1 7.9370 -4.9808 -0.0859 32 1 9.8162 -2.6859 0.5126 33 1 9.8596 -4.2985 1.2651 34 1 9.8899 -4.5412 3.6811 35 1 10.4975 -3.5178 5.8367 36 1 10.7514 -1.0749 6.0119 37 1 10.3864 0.3458 4.0340 38 1 9.7876 -0.6783 1.8762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307011802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = -50.964190 kcal Electronic energy + Delta-G solvation = -17063.551793 eV Core-core repulsion = 14290.631810 eV Total energy + Delta-G solvation = -2772.919982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.25216 -38.83572 -37.26393 -35.02520 -33.16690 -32.13285 -31.77467 -29.30692 -26.75913 -25.58576 -23.46683 -22.90653 -22.26708 -22.12032 -18.97488 -17.92793 -17.66701 -17.00267 -16.58627 -16.30457 -16.17091 -15.78265 -15.31182 -14.84008 -14.73307 -14.35995 -14.26567 -14.08911 -13.57346 -13.33736 -13.18993 -12.90253 -12.82418 -12.18539 -11.93481 -11.88709 -11.81893 -11.72804 -11.52004 -11.43269 -10.77574 -10.49186 -9.80767 -9.73801 -9.24969 -8.30919 -6.35490 0.36663 0.51371 1.35287 1.38620 1.52203 2.36454 2.64479 3.04522 3.19539 3.33772 3.89351 3.94011 4.15963 4.20951 4.26000 4.30766 4.38165 4.43430 4.49165 4.52453 4.61290 4.66620 4.71486 4.78811 4.94785 4.95743 5.10079 5.16771 5.28435 5.47423 5.56033 5.61897 5.63091 5.69231 6.11241 6.13140 6.24407 6.37126 6.59088 6.73521 7.29538 8.85830 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.004025 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.745980 B = 6954.368496 C = 7823.703295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.003 4.003 10 C 0.087 3.913 11 N -0.693 5.693 12 C 0.057 3.943 13 C 0.069 3.931 14 O -0.394 6.394 15 C 0.100 3.900 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.116 4.116 22 H 0.267 0.733 23 H 0.017 0.983 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.050 0.950 27 H 0.341 0.659 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.521 -6.402 4.602 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.041 4.041 10 C -0.042 4.042 11 N -0.325 5.325 12 C -0.072 4.072 13 C -0.007 4.007 14 O -0.314 6.314 15 C 0.024 3.976 16 C -0.107 4.107 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.135 4.135 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 26.303 -6.185 5.424 27.560 hybrid contribution -0.514 0.321 -1.111 1.266 sum 25.789 -5.864 4.313 26.796 Atomic orbital electron populations 1.70064 1.08259 1.28265 1.52504 1.26003 0.95641 1.03550 0.93921 0.85599 0.79303 0.78053 0.79326 1.18741 1.20804 1.17566 1.21423 0.91927 0.93283 1.50763 0.94932 1.19422 0.93555 0.94544 0.96599 1.21619 0.86468 0.97305 0.98793 1.60414 1.07237 1.14518 1.50294 1.22042 0.93948 0.89904 1.01277 1.22595 0.93313 0.98156 0.86674 1.88097 1.20936 1.83243 1.39088 1.21398 0.81902 1.00093 0.94244 1.19864 1.00900 0.94198 0.95727 1.21321 0.98730 1.00556 0.92562 1.21480 0.99829 0.95662 0.98044 1.21537 0.99227 0.94100 0.99317 1.21459 0.99912 1.01029 0.92882 1.21309 0.98809 0.94526 0.98814 0.92379 0.96414 0.96206 0.96107 0.93117 0.84069 0.92415 0.91551 0.92294 0.90525 0.91833 0.91033 0.84867 0.83827 0.83849 0.84392 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.95 45.86 27.47 68.60 1.88 47.74 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.54 -32.13 9.66 25.60 0.25 -31.88 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 9 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 10 C 0.09 3.65 5.62 86.30 0.49 4.14 16 11 N -0.69 -23.82 6.45 -513.88 -3.31 -27.14 16 12 C 0.06 1.55 6.07 86.30 0.52 2.07 16 13 C 0.07 1.49 6.22 71.98 0.45 1.94 16 14 O -0.39 -10.63 10.27 -148.98 -1.53 -12.16 16 15 C 0.10 2.04 6.06 71.24 0.43 2.47 16 16 C -0.11 -2.41 5.51 -19.86 -0.11 -2.52 16 17 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 18 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 19 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 20 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 21 C -0.12 -2.62 9.70 22.27 0.22 -2.41 16 22 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 23 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 24 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.34 10.67 8.73 -89.70 -0.78 9.89 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.14 8.08 -2.38 -0.02 1.12 16 33 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 34 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -71.91 322.48 1.24 -70.67 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.18 Total: 15.65 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 3.72 Total: -34.13 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -3.02 Total: -87.78 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.53 Total: -12.16 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -71.91 1.24 -70.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307011802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.703 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds