Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38482 * 120.04666 * 2 1 4 4 F 1.35099 * 120.05540 * 0.05312 * 3 2 1 5 5 C 1.38324 * 119.87898 * 179.97438 * 3 2 1 6 6 C 1.38456 * 120.19855 * 0.07253 * 5 3 2 7 7 C 1.38238 * 119.87719 * 359.97438 * 6 5 3 8 8 C 1.38061 * 120.04575 * 180.02562 * 2 1 3 9 9 C 1.50696 * 119.87620 * 0.26235 * 8 2 1 10 10 H 1.08999 * 109.46805 * 345.70299 * 9 8 2 11 11 N 1.46903 * 109.47298 * 225.70459 * 9 8 2 12 12 C 1.50702 * 109.47486 * 105.70640 * 9 8 2 13 13 H 1.08001 * 119.99888 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00055 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00160 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00008 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47262 * 89.99165 * 16 14 12 18 18 H 1.48491 * 109.47463 * 209.99766 * 16 14 12 19 19 H 1.48506 * 109.46770 * 329.99624 * 16 14 12 20 20 C 1.51375 * 109.75212 * 179.97438 * 7 6 5 21 21 C 1.54351 * 105.17208 * 342.81538 * 20 7 6 22 22 C 1.51379 * 130.36807 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47094 * 264.25012 * 1 2 3 24 24 H 1.08995 * 109.47083 * 24.25549 * 1 2 3 25 25 H 1.09001 * 109.46971 * 144.25502 * 1 2 3 26 26 H 1.08002 * 119.89753 * 180.02562 * 5 3 2 27 27 H 1.00893 * 111.00131 * 292.47802 * 11 9 8 28 28 H 1.00906 * 110.99398 * 56.42957 * 11 9 8 29 29 H 0.97004 * 120.00039 * 180.02562 * 15 14 12 30 30 H 1.09000 * 110.29886 * 101.73102 * 20 7 6 31 31 H 1.08993 * 110.31087 * 223.88557 * 20 7 6 32 32 H 1.08995 * 110.81815 * 268.12633 * 21 20 7 33 33 H 1.08999 * 110.98901 * 144.65800 * 21 20 7 34 34 H 1.09001 * 110.29752 * 316.15842 * 22 6 5 35 35 H 1.08999 * 110.30521 * 78.30728 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1987 0.0000 4 9 1.5270 2.3699 0.0011 5 6 3.5836 1.1947 0.0005 6 6 4.2765 -0.0040 -0.0004 7 6 3.5834 -1.2001 -0.0014 8 6 2.1983 -1.1951 -0.0005 9 6 1.4430 -2.4991 -0.0071 10 1 0.3982 -2.3151 0.2430 11 7 2.0306 -3.4104 0.9841 12 6 1.5295 -3.1229 -1.3762 13 1 2.0763 -2.6246 -2.1631 14 6 0.9096 -4.3292 -1.6246 15 7 0.2434 -4.9357 -0.6666 16 14 1.0162 -5.1020 -3.3219 17 1 2.2092 -5.9837 -3.3904 18 1 -0.2072 -5.9036 -3.5785 19 1 1.1314 -4.0329 -4.3462 20 6 4.5596 -2.3570 -0.0030 21 6 5.9077 -1.7475 -0.4430 22 6 5.7658 -0.2757 -0.0007 23 1 -0.3633 -0.1030 1.0225 24 1 -0.3633 0.9369 -0.4222 25 1 -0.3633 -0.8341 -0.6003 26 1 4.1247 2.1294 0.0010 27 1 2.9591 -3.6937 0.7091 28 1 2.0375 -2.9907 1.9017 29 1 -0.1924 -5.7845 -0.8413 30 1 4.6450 -2.7811 0.9975 31 1 4.2402 -3.1205 -0.7123 32 1 6.0301 -1.8175 -1.5238 33 1 6.7399 -2.2280 0.0714 34 1 6.2701 0.3825 -0.7082 35 1 6.1750 -0.1405 1.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309346617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = -32.570977 kcal Electronic energy + Delta-G solvation = -18556.478009 eV Core-core repulsion = 15660.895311 eV Total energy + Delta-G solvation = -2895.582698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.44607 -39.83777 -35.85956 -34.42463 -31.84993 -30.83080 -28.99158 -27.37884 -26.09971 -25.24781 -22.95801 -20.97396 -19.91963 -19.50985 -16.86466 -16.20184 -15.98248 -15.37614 -15.03856 -14.62066 -14.57944 -13.99545 -13.33436 -13.06661 -12.84239 -12.77565 -12.44680 -12.22970 -11.91818 -11.62010 -11.51379 -11.19072 -10.91209 -10.83947 -10.77724 -10.65278 -10.41623 -10.27943 -9.75556 -9.19827 -8.47105 -7.96960 -7.78008 -7.05057 -5.92060 -4.07146 1.68871 1.81516 3.30304 3.37983 3.41245 4.06123 4.45844 4.53522 4.91229 4.98643 5.24865 5.30359 5.33275 5.43463 5.61806 5.68847 5.87878 5.96680 5.99471 6.10798 6.14501 6.19987 6.27780 6.34335 6.43442 6.53461 6.65247 6.72695 6.79642 6.95718 7.06666 7.51389 7.59057 7.86433 8.13587 8.60643 9.00168 9.11884 9.61248 11.11840 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.008948 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.749232 B = 3128.385877 C = 3891.182855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.085 3.915 4 F -0.148 7.148 5 C -0.163 4.163 6 C -0.088 4.088 7 C -0.094 4.094 8 C -0.039 4.039 9 C 0.251 3.749 10 H 0.055 0.945 11 N -0.812 5.812 12 C -0.531 4.531 13 H 0.053 0.947 14 C 0.084 3.916 15 N -0.844 5.844 16 Si 0.882 3.118 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.076 4.076 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.324 0.676 28 H 0.295 0.705 29 H 0.256 0.744 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 7.885 2.280 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C 0.066 3.934 4 F -0.127 7.127 5 C -0.182 4.182 6 C -0.088 4.088 7 C -0.094 4.094 8 C -0.042 4.042 9 C 0.142 3.858 10 H 0.073 0.927 11 N -0.339 5.339 12 C -0.570 4.570 13 H 0.072 0.928 14 C -0.123 4.123 15 N -0.479 5.479 16 Si 0.709 3.291 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.113 4.113 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.052 7.238 2.158 10.333 hybrid contribution 0.669 0.697 -0.858 1.292 sum 7.721 7.935 1.300 11.147 Atomic orbital electron populations 1.20704 0.90526 1.03076 1.02448 1.19739 0.96974 0.91068 1.04202 1.17377 0.89733 0.80704 1.05560 1.91406 1.80591 1.46349 1.94337 1.20194 0.91833 0.98059 1.08109 1.20300 0.95786 0.92651 1.00106 1.20349 0.93201 0.94866 1.00990 1.21155 0.92872 0.97952 0.92214 1.18312 0.93368 0.81564 0.92572 0.92728 1.59324 1.27276 1.44728 1.02620 1.20783 1.35667 1.06096 0.94405 0.92833 1.24939 0.94593 0.96841 0.95924 1.70108 1.31299 1.15464 1.31008 0.86786 0.77535 0.79462 0.85296 1.20681 1.21245 1.20001 1.21110 0.91953 0.96777 1.02106 1.22310 0.97562 0.94570 1.01364 1.20984 0.91706 0.97202 1.01383 0.91609 0.92386 0.89276 0.86184 0.86181 0.89474 0.93368 0.90857 0.88715 0.91127 0.90968 0.91263 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 8.93 36.01 0.32 -1.72 16 2 C -0.12 -2.35 5.88 -104.60 -0.62 -2.97 16 3 C 0.09 1.58 7.24 -39.46 -0.29 1.30 16 4 F -0.15 -2.64 16.39 2.25 0.04 -2.60 16 5 C -0.16 -2.76 10.02 -39.47 -0.40 -3.16 16 6 C -0.09 -1.48 6.14 -104.21 -0.64 -2.12 16 7 C -0.09 -1.76 5.74 -104.19 -0.60 -2.36 16 8 C -0.04 -0.82 4.82 -104.59 -0.50 -1.33 16 9 C 0.25 5.97 2.37 -70.02 -0.17 5.81 16 10 H 0.06 1.41 5.99 -51.93 -0.31 1.10 16 11 N -0.81 -18.42 8.38 -6.65 -0.06 -18.47 16 12 C -0.53 -13.95 8.08 -34.44 -0.28 -14.23 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.08 2.26 5.39 -17.82 -0.10 2.17 16 15 N -0.84 -23.75 12.77 55.43 0.71 -23.04 16 16 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.08 -1.36 4.69 -26.84 -0.13 -1.49 16 21 C -0.12 -1.59 7.08 -25.32 -0.18 -1.77 16 22 C -0.08 -1.00 6.77 -26.84 -0.18 -1.18 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 0.97 7.48 -51.93 -0.39 0.58 16 25 H 0.09 1.79 6.70 -51.93 -0.35 1.44 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.32 6.97 5.39 -39.30 -0.21 6.76 16 28 H 0.30 6.08 8.99 -39.29 -0.35 5.72 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 31 H 0.09 1.78 7.18 -51.93 -0.37 1.40 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 285.61 15.07 4.30 4.30 Total: -1.00 -28.39 285.61 -8.22 -36.61 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -4.45 Total: 10.49 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.74 Total: -23.05 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.65 Total: -41.51 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.39 -8.22 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309346617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.042 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds