Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38482 * 120.04666 * 2 1 4 4 F 1.35099 * 120.05540 * 0.05312 * 3 2 1 5 5 C 1.38324 * 119.87898 * 179.97438 * 3 2 1 6 6 C 1.38456 * 120.19855 * 0.07253 * 5 3 2 7 7 C 1.38238 * 119.87719 * 359.97438 * 6 5 3 8 8 C 1.38061 * 120.04575 * 180.02562 * 2 1 3 9 9 C 1.50696 * 119.87620 * 0.26235 * 8 2 1 10 10 H 1.08999 * 109.46805 * 345.70299 * 9 8 2 11 11 N 1.46903 * 109.47298 * 225.70459 * 9 8 2 12 12 C 1.50702 * 109.47486 * 105.70640 * 9 8 2 13 13 H 1.08001 * 119.99888 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00055 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00160 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00008 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47262 * 89.99165 * 16 14 12 18 18 H 1.48491 * 109.47463 * 209.99766 * 16 14 12 19 19 H 1.48506 * 109.46770 * 329.99624 * 16 14 12 20 20 C 1.51375 * 109.75212 * 179.97438 * 7 6 5 21 21 C 1.54351 * 105.17208 * 342.81538 * 20 7 6 22 22 C 1.51379 * 130.36807 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47094 * 264.25012 * 1 2 3 24 24 H 1.08995 * 109.47083 * 24.25549 * 1 2 3 25 25 H 1.09001 * 109.46971 * 144.25502 * 1 2 3 26 26 H 1.08002 * 119.89753 * 180.02562 * 5 3 2 27 27 H 1.00893 * 111.00131 * 292.47802 * 11 9 8 28 28 H 1.00906 * 110.99398 * 56.42957 * 11 9 8 29 29 H 0.97004 * 120.00039 * 180.02562 * 15 14 12 30 30 H 1.09000 * 110.29886 * 101.73102 * 20 7 6 31 31 H 1.08993 * 110.31087 * 223.88557 * 20 7 6 32 32 H 1.08995 * 110.81815 * 268.12633 * 21 20 7 33 33 H 1.08999 * 110.98901 * 144.65800 * 21 20 7 34 34 H 1.09001 * 110.29752 * 316.15842 * 22 6 5 35 35 H 1.08999 * 110.30521 * 78.30728 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1987 0.0000 4 9 1.5270 2.3699 0.0011 5 6 3.5836 1.1947 0.0005 6 6 4.2765 -0.0040 -0.0004 7 6 3.5834 -1.2001 -0.0014 8 6 2.1983 -1.1951 -0.0005 9 6 1.4430 -2.4991 -0.0071 10 1 0.3982 -2.3151 0.2430 11 7 2.0306 -3.4104 0.9841 12 6 1.5295 -3.1229 -1.3762 13 1 2.0763 -2.6246 -2.1631 14 6 0.9096 -4.3292 -1.6246 15 7 0.2434 -4.9357 -0.6666 16 14 1.0162 -5.1020 -3.3219 17 1 2.2092 -5.9837 -3.3904 18 1 -0.2072 -5.9036 -3.5785 19 1 1.1314 -4.0329 -4.3462 20 6 4.5596 -2.3570 -0.0030 21 6 5.9077 -1.7475 -0.4430 22 6 5.7658 -0.2757 -0.0007 23 1 -0.3633 -0.1030 1.0225 24 1 -0.3633 0.9369 -0.4222 25 1 -0.3633 -0.8341 -0.6003 26 1 4.1247 2.1294 0.0010 27 1 2.9591 -3.6937 0.7091 28 1 2.0375 -2.9907 1.9017 29 1 -0.1924 -5.7845 -0.8413 30 1 4.6450 -2.7811 0.9975 31 1 4.2402 -3.1205 -0.7123 32 1 6.0301 -1.8175 -1.5238 33 1 6.7399 -2.2280 0.0714 34 1 6.2701 0.3825 -0.7082 35 1 6.1750 -0.1405 1.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309346617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = -48.630123 kcal Electronic energy + Delta-G solvation = -18557.174386 eV Core-core repulsion = 15660.895311 eV Total energy + Delta-G solvation = -2896.279075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86134 -41.22602 -37.28062 -36.08013 -33.74543 -32.32747 -30.43675 -28.77394 -27.87885 -26.74628 -24.58939 -22.36414 -21.28496 -20.97901 -18.68520 -17.67581 -17.58002 -16.72693 -16.52844 -16.30046 -15.95022 -15.75894 -14.83206 -14.67465 -14.36474 -14.18592 -14.04228 -13.63839 -13.28396 -13.04849 -12.99270 -12.81207 -12.62585 -12.52688 -12.23425 -12.11587 -11.92421 -11.54661 -11.39766 -11.12960 -10.54219 -9.50632 -9.17529 -8.81488 -7.98233 -6.18422 0.26047 0.37738 1.41310 1.43666 1.52132 2.44043 2.66059 3.20618 3.26556 3.62589 3.71765 3.93531 4.17916 4.23158 4.25855 4.36104 4.53876 4.62571 4.70290 4.72202 4.80974 4.92339 4.97797 5.00420 5.12042 5.23741 5.27962 5.31875 5.39852 5.43859 5.58822 5.74038 5.90513 6.06066 6.20021 6.66362 7.12870 7.29180 7.52844 9.04997 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.008948 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.749232 B = 3128.385877 C = 3891.182855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C 0.077 3.923 4 F -0.145 7.145 5 C -0.156 4.156 6 C -0.085 4.085 7 C -0.110 4.110 8 C -0.066 4.066 9 C 0.259 3.741 10 H 0.024 0.976 11 N -0.822 5.822 12 C -0.534 4.534 13 H 0.040 0.960 14 C 0.039 3.961 15 N -0.876 5.876 16 Si 0.941 3.059 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.084 4.084 21 C -0.113 4.113 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.152 0.848 27 H 0.330 0.670 28 H 0.306 0.694 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.266 9.043 2.122 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C 0.058 3.942 4 F -0.124 7.124 5 C -0.174 4.174 6 C -0.085 4.085 7 C -0.110 4.110 8 C -0.069 4.069 9 C 0.150 3.850 10 H 0.041 0.959 11 N -0.350 5.350 12 C -0.573 4.573 13 H 0.059 0.941 14 C -0.165 4.165 15 N -0.512 5.512 16 Si 0.767 3.233 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.121 4.121 21 C -0.150 4.150 22 C -0.107 4.107 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.170 0.830 27 H 0.145 0.855 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.508 8.405 1.995 12.847 hybrid contribution -0.078 0.401 -0.779 0.879 sum 9.430 8.806 1.217 12.960 Atomic orbital electron populations 1.20622 0.90377 1.02626 1.02511 1.19884 0.97468 0.91646 1.05070 1.17462 0.90566 0.80261 1.05957 1.91409 1.80719 1.45904 1.94352 1.20568 0.91166 0.99578 1.06130 1.20788 0.97953 0.91588 0.98165 1.20675 0.92667 0.96973 1.00721 1.20892 0.94034 0.96833 0.95125 1.17923 0.92359 0.83229 0.91534 0.95854 1.59152 1.27694 1.45101 1.03071 1.20969 1.34863 1.06082 0.95399 0.94130 1.25593 0.94447 0.97416 0.99065 1.70223 1.32425 1.15799 1.32763 0.85852 0.77592 0.78509 0.81342 1.19968 1.21066 1.20026 1.21132 0.93478 0.95598 1.01884 1.22331 0.96243 0.94703 1.01718 1.21090 0.88904 0.97210 1.03448 0.90899 0.90914 0.91909 0.82984 0.85514 0.88305 0.93533 0.90027 0.91718 0.91202 0.87943 0.88916 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 8.93 71.24 0.64 -3.34 16 2 C -0.14 -5.59 5.88 -19.85 -0.12 -5.71 16 3 C 0.08 2.74 7.24 22.35 0.16 2.90 16 4 F -0.15 -4.95 16.39 44.97 0.74 -4.21 16 5 C -0.16 -4.82 10.02 22.34 0.22 -4.59 16 6 C -0.08 -2.61 6.14 -19.60 -0.12 -2.73 16 7 C -0.11 -4.04 5.74 -19.58 -0.11 -4.15 16 8 C -0.07 -2.83 4.82 -19.84 -0.10 -2.92 16 9 C 0.26 12.79 2.37 43.42 0.10 12.89 16 10 H 0.02 1.29 5.99 -2.39 -0.01 1.28 16 11 N -0.82 -38.23 8.38 -174.95 -1.47 -39.70 16 12 C -0.53 -28.95 8.08 25.60 0.21 -28.74 16 13 H 0.04 2.25 7.74 -2.91 -0.02 2.22 16 14 C 0.04 2.12 5.39 84.65 0.46 2.58 16 15 N -0.88 -50.55 12.77 21.45 0.27 -50.28 16 16 Si 0.94 43.41 29.54 68.60 2.03 45.43 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 C -0.08 -2.66 4.69 30.52 0.14 -2.52 16 21 C -0.11 -2.58 7.08 31.51 0.22 -2.36 16 22 C -0.07 -1.52 6.77 30.52 0.21 -1.31 16 23 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.07 2.45 7.48 -2.39 -0.02 2.44 16 25 H 0.06 2.68 6.70 -2.39 -0.02 2.66 16 26 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 27 H 0.33 14.47 5.39 -89.70 -0.48 13.99 16 28 H 0.31 12.90 8.99 -89.69 -0.81 12.09 16 29 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.08 2.41 7.49 -2.39 -0.02 2.39 16 31 H 0.06 2.44 7.18 -2.39 -0.02 2.42 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.98 285.61 3.32 -58.65 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.17 Total: 30.10 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 1.92 Total: -40.00 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.19 Total: -89.97 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.74 Total: -4.21 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.98 3.32 -58.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309346617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.025 kcal (2) G-P(sol) polarization free energy of solvation -61.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds