Wall clock time and date at job start Mon Mar 30 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 C 1.50694 * 109.46877 * 240.00126 * 2 1 3 5 5 H 1.08010 * 119.99972 * 239.99926 * 4 2 1 6 6 C 1.37880 * 120.00359 * 59.99686 * 4 2 1 7 7 N 1.31510 * 119.99756 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47000 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46754 * 120.00212 * 8 6 4 11 11 H 1.48497 * 109.47223 * 240.00241 * 8 6 4 12 12 N 1.46893 * 109.47134 * 120.00058 * 2 1 3 13 13 C 1.46908 * 111.00125 * 274.99913 * 12 2 1 14 14 H 1.08999 * 115.54788 * 350.72306 * 13 12 2 15 15 C 1.53000 * 117.49864 * 136.39075 * 13 12 2 16 16 C 1.53002 * 60.02940 * 107.47917 * 15 13 12 17 17 H 1.09000 * 117.49996 * 107.50493 * 16 15 13 18 18 C 1.50706 * 117.49668 * 252.51929 * 16 15 13 19 19 C 1.38262 * 119.98641 * 8.33453 * 18 16 15 20 20 C 1.38224 * 120.05083 * 179.76456 * 19 18 16 21 21 C 1.38221 * 120.02787 * 0.51339 * 20 19 18 22 22 C 1.38444 * 119.96794 * 359.74301 * 21 20 19 23 23 F 1.35101 * 120.02165 * 179.97438 * 22 21 20 24 24 C 1.38170 * 119.98816 * 188.61012 * 18 16 15 25 25 H 1.09003 * 109.46803 * 300.00352 * 1 2 3 26 26 H 1.09000 * 109.47155 * 59.99763 * 1 2 3 27 27 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00255 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00492 * 38.94891 * 12 2 1 30 30 H 1.09002 * 117.49833 * 214.98022 * 15 13 12 31 31 H 1.09002 * 117.49953 * 359.97438 * 15 13 12 32 32 H 1.08007 * 119.97650 * 0.02562 * 19 18 16 33 33 H 1.08003 * 119.98897 * 180.25526 * 20 19 18 34 34 H 1.07997 * 120.02002 * 179.72567 * 21 20 19 35 35 H 1.08002 * 120.01463 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6038 10 1 1.1677 -1.5866 -4.8164 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.9209 1.2759 2.1176 15 6 1.5683 -0.2946 3.6919 16 6 3.0708 -0.1143 3.4662 17 1 3.5598 0.7173 3.9735 18 6 3.9047 -1.3595 3.3065 19 6 3.2903 -2.5929 3.1935 20 6 4.0537 -3.7352 3.0422 21 6 5.4328 -3.6468 3.0143 22 6 6.0492 -2.4129 3.1327 23 9 7.3971 -2.3253 3.1061 24 6 5.2831 -1.2686 3.2789 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7094 1.1618 -3.4844 29 1 1.4496 -1.4979 1.4101 30 1 1.0687 0.4186 4.3476 31 1 1.1830 -1.3137 3.7252 32 1 2.2128 -2.6634 3.2193 33 1 3.5725 -4.6977 2.9498 34 1 6.0292 -4.5399 2.9005 35 1 5.7631 -0.3056 3.3721 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309389906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:44 Heat of formation + Delta-G solvation = -12.335137 kcal Electronic energy + Delta-G solvation = -17716.984058 eV Core-core repulsion = 14822.278852 eV Total energy + Delta-G solvation = -2894.705206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83994 -40.55070 -38.40550 -36.23926 -33.66766 -31.84646 -30.94044 -29.10074 -27.19727 -24.83289 -23.74666 -22.56362 -22.11957 -21.09024 -18.44156 -18.05198 -17.37380 -17.03219 -16.77108 -16.53123 -16.16359 -15.82654 -14.79488 -14.60433 -14.40825 -14.19589 -14.01833 -13.48940 -13.37877 -12.96821 -12.91352 -12.86638 -12.50254 -12.29000 -12.14696 -11.99497 -11.84559 -11.71333 -11.17648 -10.93383 -10.48079 -9.74996 -9.43010 -8.70472 -8.09661 -6.19593 0.32198 0.38614 1.40209 1.42847 1.54436 2.43500 2.62528 3.11396 3.19370 3.38461 3.51192 3.80120 3.96406 4.11920 4.19665 4.22173 4.36434 4.45043 4.61123 4.78284 4.81452 4.91584 4.98036 5.03759 5.14804 5.18860 5.23865 5.27828 5.46235 5.49639 5.71232 5.73168 5.86851 6.07409 6.30201 6.67314 6.85628 6.96858 7.50347 8.95969 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.006446 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.210726 B = 4342.443079 C = 5216.124885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.220 3.780 3 H 0.002 0.998 4 C -0.511 4.511 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.648 5.648 13 C 0.028 3.972 14 H 0.096 0.904 15 C -0.175 4.175 16 C -0.124 4.124 17 H 0.123 0.877 18 C -0.003 4.003 19 C -0.124 4.124 20 C -0.088 4.088 21 C -0.170 4.170 22 C 0.076 3.924 23 F -0.153 7.153 24 C -0.167 4.167 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.334 0.666 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -6.152 13.916 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.111 3.889 3 H 0.020 0.980 4 C -0.550 4.550 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.277 5.277 13 C -0.084 4.084 14 H 0.114 0.886 15 C -0.214 4.214 16 C -0.144 4.144 17 H 0.141 0.859 18 C -0.003 4.003 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.189 4.189 22 C 0.057 3.943 23 F -0.131 7.131 24 C -0.186 4.186 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.835 -5.967 13.581 15.322 hybrid contribution -0.251 0.143 -0.954 0.997 sum 3.583 -5.824 12.627 14.359 Atomic orbital electron populations 1.22248 0.99622 0.99288 1.00186 1.18968 0.90173 0.92524 0.87214 0.98023 1.21459 1.30059 1.12293 0.91152 0.93066 1.25647 0.95548 0.95884 1.01701 1.70003 1.38169 1.24204 1.23842 0.85552 0.78108 0.78620 0.79616 1.19546 1.20411 1.20999 1.60277 1.56716 1.08416 1.02250 1.22579 1.02520 0.96603 0.86649 0.88639 1.23653 0.94520 1.03561 0.99652 1.21490 0.91370 0.97238 1.04265 0.85944 1.18927 0.91865 0.94257 0.95263 1.21244 1.00957 0.91812 1.00143 1.21273 0.92491 0.99837 0.96983 1.21313 0.96378 0.96400 1.04764 1.17879 0.76470 0.95553 1.04446 1.91441 1.30148 1.97250 1.94311 1.20999 0.94248 0.97934 1.05394 0.95192 0.92252 0.94890 0.93056 0.84642 0.86571 0.87493 0.84600 0.82565 0.83374 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.13 8.94 71.98 0.64 -6.48 16 2 C 0.22 10.82 2.53 44.17 0.11 10.94 16 3 H 0.00 0.10 7.57 -2.39 -0.02 0.08 16 4 C -0.51 -28.25 8.84 25.60 0.23 -28.02 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 N -0.65 -25.84 5.37 -473.19 -2.54 -28.38 16 13 C 0.03 0.92 6.04 44.94 0.27 1.19 16 14 H 0.10 3.32 7.60 -2.39 -0.02 3.30 16 15 C -0.18 -4.16 9.56 30.60 0.29 -3.87 16 16 C -0.12 -3.37 6.04 -11.51 -0.07 -3.44 16 17 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 18 C 0.00 -0.08 5.24 -19.87 -0.10 -0.18 16 19 C -0.12 -3.25 8.44 22.27 0.19 -3.06 16 20 C -0.09 -2.10 10.04 22.26 0.22 -1.88 16 21 C -0.17 -4.33 10.03 22.31 0.22 -4.11 16 22 C 0.08 2.23 7.30 22.38 0.16 2.39 16 23 F -0.15 -4.61 17.27 44.97 0.78 -3.84 16 24 C -0.17 -4.97 9.72 22.31 0.22 -4.76 16 25 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 26 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 27 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.33 12.33 7.62 -89.69 -0.68 11.65 16 30 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 31 H 0.11 2.32 6.11 -2.39 -0.01 2.31 16 32 H 0.14 3.16 5.65 -2.91 -0.02 3.15 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -61.36 296.26 3.75 -57.61 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.41 Total: 21.22 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 2.84 Total: -40.25 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.30 Total: -81.07 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.78 Total: -3.84 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.36 3.75 -57.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309389906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.276 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds