Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.50703 * 109.47392 * 239.99696 * 2 1 3 5 5 H 1.07995 * 119.99644 * 274.05620 * 4 2 1 6 6 C 1.37875 * 119.99729 * 94.33073 * 4 2 1 7 7 N 1.31516 * 119.99926 * 181.97870 * 6 4 2 8 8 Si 1.86804 * 119.99891 * 1.97070 * 6 4 2 9 9 H 1.48498 * 109.46826 * 85.09117 * 8 6 4 10 10 H 1.48502 * 109.46820 * 205.08376 * 8 6 4 11 11 H 1.48492 * 109.47409 * 325.08877 * 8 6 4 12 12 N 1.46906 * 109.46692 * 119.99760 * 2 1 3 13 13 C 1.46899 * 111.00071 * 274.99584 * 12 2 1 14 14 H 1.09007 * 115.54999 * 9.42727 * 13 12 2 15 15 C 1.52990 * 117.50319 * 223.74867 * 13 12 2 16 16 C 1.52996 * 117.49545 * 155.08587 * 13 12 2 17 17 H 1.09000 * 117.50196 * 359.97438 * 16 13 12 18 18 C 1.50706 * 117.50150 * 214.98053 * 16 13 12 19 19 C 1.38261 * 119.98913 * 299.73353 * 18 16 13 20 20 C 1.38220 * 120.05320 * 179.76283 * 19 18 16 21 21 C 1.38221 * 120.02095 * 0.50886 * 20 19 18 22 22 C 1.38434 * 119.97737 * 359.74103 * 21 20 19 23 23 F 1.35102 * 120.02794 * 179.97438 * 22 21 20 24 24 C 1.38171 * 119.98344 * 120.00325 * 18 16 13 25 25 H 1.08993 * 109.47287 * 304.47810 * 1 2 3 26 26 H 1.09003 * 109.46914 * 64.48267 * 1 2 3 27 27 H 1.09007 * 109.47177 * 184.47535 * 1 2 3 28 28 H 0.97001 * 120.00083 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99232 * 151.04889 * 12 2 1 30 30 H 1.09003 * 117.50001 * 0.02562 * 15 13 12 31 31 H 1.09003 * 117.50377 * 145.02515 * 15 13 12 32 32 H 1.07999 * 119.97407 * 0.02562 * 19 18 16 33 33 H 1.08003 * 119.99022 * 180.25254 * 20 19 18 34 34 H 1.08004 * 120.01090 * 179.76544 * 21 20 19 35 35 H 1.07998 * 120.01690 * 0.02562 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1500 -1.7840 -1.2238 6 6 2.3472 0.0107 -2.3626 7 7 2.7485 -0.6127 -3.4489 8 14 2.2035 1.8732 -2.3536 9 1 3.4513 2.4632 -1.8058 10 1 1.9932 2.3601 -3.7407 11 1 1.0520 2.2768 -1.5073 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.6208 1.1985 2.1958 15 6 3.3278 0.1599 3.2333 16 6 1.9948 -0.3912 3.7456 17 1 1.8901 -1.4740 3.8145 18 6 1.2777 0.4000 4.8091 19 6 1.7345 1.6563 5.1619 20 6 1.0749 2.3851 6.1337 21 6 -0.0362 1.8541 6.7613 22 6 -0.4915 0.5941 6.4126 23 9 -1.5771 0.0739 7.0258 24 6 0.1672 -0.1329 5.4352 25 1 -0.3633 0.5817 0.8471 26 1 -0.3633 0.4427 -0.9275 27 1 -0.3634 -1.0246 0.0802 28 1 2.9697 -0.1054 -4.2455 29 1 2.9173 -1.1205 1.0288 30 1 4.1009 -0.5601 2.9648 31 1 3.6856 1.0944 3.6656 32 1 2.6050 2.0704 4.6748 33 1 1.4303 3.3681 6.4056 34 1 -0.5492 2.4221 7.5233 35 1 -0.1867 -1.1163 5.1628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309389911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -17.787529 kcal Electronic energy + Delta-G solvation = -17339.145838 eV Core-core repulsion = 14444.204199 eV Total energy + Delta-G solvation = -2894.941639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89810 -40.57725 -38.54814 -36.23991 -33.98615 -32.02113 -31.24181 -29.50804 -27.26561 -24.89020 -23.70984 -22.64876 -21.57416 -21.32981 -19.06123 -18.33730 -17.34142 -17.10106 -16.94305 -16.59989 -16.22490 -15.53299 -15.39090 -14.71473 -14.59102 -14.29637 -14.03817 -13.63610 -13.47285 -13.08569 -12.96582 -12.88574 -12.63433 -12.54461 -12.25560 -11.89725 -11.85935 -11.72584 -11.24515 -11.03570 -10.78799 -9.86832 -9.60908 -8.87641 -8.31883 -6.38546 0.18129 0.25942 1.32441 1.35683 1.46126 2.31904 2.51219 2.99703 3.06017 3.22821 3.44348 3.79429 3.88789 4.04929 4.11338 4.14463 4.23218 4.32943 4.50055 4.53821 4.73399 4.87468 4.91153 4.96886 4.99448 5.12824 5.15285 5.17256 5.22141 5.40238 5.49252 5.62213 5.66830 5.96246 6.04279 6.51645 6.67208 6.81843 7.31336 8.84691 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033519 B = 0.004645 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.139510 B = 6026.105725 C = 6100.325737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.188 3.812 3 H 0.009 0.991 4 C -0.524 4.524 5 H 0.037 0.963 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.247 1.247 12 N -0.659 5.659 13 C 0.030 3.970 14 H 0.101 0.899 15 C -0.181 4.181 16 C -0.114 4.114 17 H 0.109 0.891 18 C -0.022 4.022 19 C -0.137 4.137 20 C -0.082 4.082 21 C -0.163 4.163 22 C 0.080 3.920 23 F -0.151 7.151 24 C -0.163 4.163 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.267 0.733 29 H 0.341 0.659 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 8.418 20.667 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.079 3.921 3 H 0.027 0.973 4 C -0.562 4.562 5 H 0.055 0.945 6 C -0.180 4.180 7 N -0.584 5.584 8 Si 0.764 3.236 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.171 1.171 12 N -0.289 5.289 13 C -0.081 4.081 14 H 0.119 0.881 15 C -0.219 4.219 16 C -0.134 4.134 17 H 0.127 0.873 18 C -0.023 4.023 19 C -0.155 4.155 20 C -0.100 4.100 21 C -0.182 4.182 22 C 0.061 3.939 23 F -0.129 7.129 24 C -0.182 4.182 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.359 8.149 20.639 22.315 hybrid contribution 0.416 0.458 -0.761 0.981 sum -1.943 8.607 19.878 21.748 Atomic orbital electron populations 1.21789 0.97048 1.00349 0.98879 1.19423 0.93101 0.92119 0.87414 0.97322 1.21266 1.43587 0.94407 0.96980 0.94510 1.25872 0.93869 1.03486 0.94806 1.70043 1.46865 1.38101 1.03381 0.85839 0.80082 0.80018 0.77622 1.18966 1.21266 1.17111 1.60264 1.32497 1.31734 1.04413 1.22646 1.01736 0.95872 0.87858 0.88131 1.23712 0.90789 1.03978 1.03412 1.21290 0.99797 0.98997 0.93309 0.87266 1.19067 0.93832 0.94634 0.94730 1.21432 1.01417 0.93925 0.98735 1.21344 0.93542 1.00733 0.94344 1.21418 0.99416 0.94134 1.03206 1.17909 0.86137 0.94382 0.95482 1.91465 1.52605 1.87085 1.81788 1.21048 0.97444 1.01752 0.97925 0.93836 0.94362 0.93803 0.92366 0.83870 0.87888 0.86300 0.83678 0.81805 0.82823 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.35 71.98 0.67 -4.56 16 2 C 0.19 8.57 2.10 44.17 0.09 8.66 16 3 H 0.01 0.41 5.05 -2.39 -0.01 0.40 16 4 C -0.52 -29.17 8.84 25.60 0.23 -28.95 16 5 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 6 C 0.02 1.02 5.47 84.65 0.46 1.49 16 7 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 8 Si 0.94 42.81 26.74 68.60 1.83 44.64 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.25 -10.51 6.89 99.48 0.69 -9.82 16 12 N -0.66 -25.95 6.58 -473.31 -3.11 -29.07 16 13 C 0.03 0.94 5.71 44.91 0.26 1.20 16 14 H 0.10 3.18 7.77 -2.38 -0.02 3.16 16 15 C -0.18 -4.33 9.56 30.61 0.29 -4.04 16 16 C -0.11 -2.99 5.97 -11.52 -0.07 -3.06 16 17 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 18 C -0.02 -0.53 5.61 -19.87 -0.11 -0.64 16 19 C -0.14 -2.65 9.30 22.27 0.21 -2.44 16 20 C -0.08 -1.31 10.04 22.26 0.22 -1.09 16 21 C -0.16 -2.97 10.03 22.31 0.22 -2.74 16 22 C 0.08 1.86 7.30 22.37 0.16 2.03 16 23 F -0.15 -3.76 17.27 44.97 0.78 -2.98 16 24 C -0.16 -4.03 9.72 22.31 0.22 -3.81 16 25 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 26 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 27 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.34 13.68 8.13 -89.69 -0.73 12.95 16 30 H 0.10 2.45 8.09 -2.39 -0.02 2.43 16 31 H 0.12 2.25 6.17 -2.39 -0.01 2.24 16 32 H 0.15 2.31 6.01 -2.91 -0.02 2.29 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -63.61 298.78 3.00 -60.61 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.35 Total: 22.22 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 2.86 Total: -37.96 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.82 Total: -86.52 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.83 Total: 44.64 kcal Total: -63.61 3.00 -60.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309389911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.821 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds