Wall clock time and date at job start Mon Mar 30 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47062 * 2 1 4 4 C 1.50697 * 109.47008 * 239.99937 * 2 1 3 5 5 H 1.08001 * 120.00332 * 239.99826 * 4 2 1 6 6 C 1.37879 * 120.00245 * 59.99981 * 4 2 1 7 7 N 1.31511 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00277 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47093 * 90.00187 * 8 6 4 10 10 H 1.48498 * 109.47027 * 210.00366 * 8 6 4 11 11 H 1.48505 * 109.47035 * 330.00022 * 8 6 4 12 12 N 1.46900 * 109.47123 * 119.99988 * 2 1 3 13 13 C 1.46899 * 111.00062 * 272.79038 * 12 2 1 14 14 H 1.09000 * 110.26659 * 35.87401 * 13 12 2 15 15 C 1.54343 * 110.30103 * 273.79944 * 13 12 2 16 16 C 1.54343 * 102.39688 * 267.42809 * 15 13 12 17 17 C 1.51380 * 105.16770 * 333.65085 * 16 15 13 18 18 C 1.38462 * 130.36345 * 196.90287 * 17 16 15 19 19 C 1.38329 * 120.19418 * 179.80982 * 18 17 16 20 20 F 1.35099 * 120.05967 * 180.26851 * 19 18 17 21 21 C 1.38471 * 119.88139 * 0.49936 * 19 18 17 22 22 C 1.38065 * 119.90482 * 359.74630 * 21 19 18 23 23 C 1.38226 * 109.76024 * 17.18817 * 17 16 15 24 24 H 1.09001 * 109.46994 * 61.75152 * 1 2 3 25 25 H 1.09001 * 109.47297 * 181.74731 * 1 2 3 26 26 H 1.08997 * 109.47326 * 301.74861 * 1 2 3 27 27 H 0.97001 * 119.99984 * 180.02562 * 7 6 4 28 28 H 1.00898 * 111.00351 * 148.83436 * 12 2 1 29 29 H 1.09001 * 110.81854 * 149.19650 * 15 13 12 30 30 H 1.08998 * 110.81832 * 25.65820 * 15 13 12 31 31 H 1.08998 * 110.29917 * 214.73036 * 16 15 13 32 32 H 1.08994 * 110.38451 * 92.61918 * 16 15 13 33 33 H 1.08001 * 119.90330 * 0.02562 * 18 17 16 34 34 H 1.07992 * 120.04970 * 179.72841 * 21 19 18 35 35 H 1.08002 * 119.87274 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 2.1322 0.2345 2.3335 14 1 1.3254 0.9668 2.3040 15 6 3.5019 0.9454 2.3101 16 6 4.3656 0.0301 3.2036 17 6 3.3875 -0.6461 4.1405 18 6 3.6046 -1.3157 5.3328 19 6 2.5400 -1.8583 6.0298 20 9 2.7544 -2.5064 7.1957 21 6 1.2549 -1.7401 5.5281 22 6 1.0394 -1.0767 4.3366 23 6 2.1042 -0.5287 3.6405 24 1 -0.3633 0.4864 -0.9053 25 1 -0.3634 -1.0272 0.0313 26 1 -0.3634 0.5407 0.8738 27 1 0.7089 1.1613 -3.4844 28 1 2.9001 -1.1508 1.0183 29 1 3.4268 1.9453 2.7375 30 1 3.9005 0.9852 1.2963 31 1 5.0836 0.6231 3.7702 32 1 4.8840 -0.7127 2.5975 33 1 4.6077 -1.4117 5.7215 34 1 0.4223 -2.1664 6.0678 35 1 0.0368 -0.9851 3.9455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309392913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:02 Heat of formation + Delta-G solvation = -27.094987 kcal Electronic energy + Delta-G solvation = -17806.409592 eV Core-core repulsion = 14911.064351 eV Total energy + Delta-G solvation = -2895.345241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.80138 -39.98683 -36.42284 -34.23899 -32.15294 -30.78418 -28.58565 -28.09703 -25.63621 -24.87026 -22.78993 -20.96953 -20.66270 -19.47651 -17.04918 -16.74229 -16.23211 -15.58220 -15.22258 -15.19395 -14.55025 -14.15667 -13.51335 -13.38340 -13.29070 -12.71672 -12.67509 -12.18183 -11.79063 -11.54506 -11.39516 -11.28400 -10.93659 -10.73722 -10.62984 -10.51551 -10.34721 -10.15587 -9.90650 -8.90100 -8.79195 -8.51371 -8.27355 -7.33235 -6.06426 -4.13253 1.31166 1.37346 3.27535 3.34279 3.36851 3.71625 4.21986 4.37390 4.64712 4.78619 4.99939 5.16819 5.24819 5.31276 5.33686 5.38818 5.63787 5.79038 5.93851 6.01113 6.10082 6.13796 6.23113 6.32116 6.36449 6.55117 6.79577 6.84526 7.04901 7.11267 7.20206 7.46020 7.74017 7.86049 8.23099 8.33939 8.61384 8.97398 9.53097 10.99550 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037399 B = 0.004963 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.494962 B = 5640.466346 C = 5792.194997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.675 5.675 13 C 0.124 3.876 14 H 0.083 0.917 15 C -0.151 4.151 16 C -0.079 4.079 17 C -0.069 4.069 18 C -0.148 4.148 19 C 0.088 3.912 20 F -0.146 7.146 21 C -0.158 4.158 22 C -0.063 4.063 23 C -0.074 4.074 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.004 0.996 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -1.040 13.308 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.023 0.977 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.305 5.305 13 C 0.013 3.987 14 H 0.101 0.899 15 C -0.190 4.190 16 C -0.116 4.116 17 C -0.070 4.070 18 C -0.166 4.166 19 C 0.068 3.932 20 F -0.125 7.125 21 C -0.177 4.177 22 C -0.082 4.082 23 C -0.075 4.075 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.955 -1.167 13.352 13.725 hybrid contribution 1.060 -0.151 -0.841 1.362 sum 4.016 -1.318 12.512 13.206 Atomic orbital electron populations 1.21739 0.97921 0.99137 0.99610 1.19129 0.92542 0.92561 0.85253 0.97732 1.21262 1.31557 1.12535 0.90466 0.92286 1.24903 0.95018 0.94945 0.99013 1.69889 1.36577 1.22796 1.23503 0.86535 0.79233 0.79347 0.82499 1.20619 1.21278 1.19954 1.60704 1.33617 1.30065 1.06156 1.20983 0.96167 0.92696 0.88876 0.89894 1.23031 0.96807 0.98554 1.00635 1.21054 0.96610 0.98179 0.95770 1.20479 0.96053 0.96699 0.93727 1.20435 0.98390 1.01760 0.96061 1.17458 0.94292 0.97790 0.83621 1.91462 1.95745 1.79400 1.45878 1.20985 0.95412 1.03222 0.98100 1.20515 0.99502 0.95315 0.92825 1.20777 0.92741 0.97966 0.96056 0.90008 0.95004 0.97736 0.92896 0.84816 0.91223 0.89651 0.90916 0.89873 0.85469 0.85008 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.22 37.16 0.34 -2.70 16 2 C 0.21 5.13 2.40 -68.87 -0.17 4.97 16 3 H 0.01 0.13 7.66 -51.93 -0.40 -0.27 16 4 C -0.52 -13.79 8.59 -34.44 -0.30 -14.09 16 5 H 0.06 1.55 7.58 -52.49 -0.40 1.16 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.78 11.31 55.43 0.63 -24.15 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.68 -13.77 6.07 -101.08 -0.61 -14.38 16 13 C 0.12 2.13 2.96 -67.83 -0.20 1.93 16 14 H 0.08 1.50 7.37 -51.93 -0.38 1.12 16 15 C -0.15 -2.26 6.35 -25.32 -0.16 -2.42 16 16 C -0.08 -1.03 6.75 -26.85 -0.18 -1.21 16 17 C -0.07 -0.98 6.14 -104.21 -0.64 -1.62 16 18 C -0.15 -1.98 10.02 -39.47 -0.40 -2.37 16 19 C 0.09 1.21 7.30 -39.46 -0.29 0.92 16 20 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 21 C -0.16 -2.10 10.03 -39.56 -0.40 -2.50 16 22 C -0.06 -0.91 10.04 -39.54 -0.40 -1.31 16 23 C -0.07 -1.16 5.77 -104.19 -0.60 -1.77 16 24 H 0.08 2.16 6.03 -51.93 -0.31 1.85 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.00 0.08 7.63 -51.93 -0.40 -0.32 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.76 7.93 -39.29 -0.31 6.45 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 293.60 15.07 4.42 4.42 Total: -1.00 -27.46 293.60 -8.73 -36.19 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.71 Total: 4.63 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -3.47 Total: -20.57 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.01 Total: -38.53 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.46 -8.73 -36.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309392913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.094 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds