Wall clock time and date at job start Mon Mar 30 2020 06:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47025 * 2 1 4 4 C 1.50696 * 109.46918 * 239.99859 * 2 1 3 5 5 H 1.08003 * 119.99899 * 245.64075 * 4 2 1 6 6 C 1.37873 * 120.00136 * 65.63984 * 4 2 1 7 7 N 1.31514 * 120.00179 * 197.74043 * 6 4 2 8 8 Si 1.86801 * 119.99996 * 17.46545 * 6 4 2 9 9 H 1.48495 * 109.47113 * 180.27460 * 8 6 4 10 10 H 1.48498 * 109.46843 * 300.27401 * 8 6 4 11 11 H 1.48496 * 109.47171 * 60.27464 * 8 6 4 12 12 N 1.46904 * 109.46972 * 119.99997 * 2 1 3 13 13 C 1.46901 * 111.00072 * 275.00106 * 12 2 1 14 14 H 1.09006 * 110.26714 * 32.92182 * 13 12 2 15 15 C 1.54340 * 110.30677 * 154.99944 * 13 12 2 16 16 C 1.54343 * 102.39482 * 92.56625 * 15 13 12 17 17 C 1.51381 * 105.16654 * 26.35446 * 16 15 13 18 18 C 1.38463 * 130.36286 * 162.82828 * 17 16 15 19 19 C 1.38322 * 120.19650 * 179.97438 * 18 17 16 20 20 F 1.35106 * 120.06184 * 179.97438 * 19 18 17 21 21 C 1.38479 * 119.88081 * 0.02562 * 19 18 17 22 22 C 1.38069 * 119.90678 * 0.02562 * 21 19 18 23 23 C 1.38228 * 109.75986 * 342.81046 * 17 16 15 24 24 H 1.09004 * 109.47002 * 66.38014 * 1 2 3 25 25 H 1.08999 * 109.47573 * 186.38286 * 1 2 3 26 26 H 1.09005 * 109.47121 * 306.38560 * 1 2 3 27 27 H 0.97004 * 119.99745 * 354.60991 * 7 6 4 28 28 H 1.00894 * 111.00260 * 151.04195 * 12 2 1 29 29 H 1.09000 * 110.82301 * 210.79493 * 15 13 12 30 30 H 1.09001 * 110.82051 * 334.14862 * 15 13 12 31 31 H 1.08994 * 110.30147 * 145.27796 * 16 15 13 32 32 H 1.09000 * 110.30232 * 267.33872 * 16 15 13 33 33 H 1.08005 * 119.90452 * 359.94999 * 18 17 16 34 34 H 1.07999 * 120.04845 * 179.97438 * 21 19 18 35 35 H 1.07992 * 119.87213 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5760 -1.6386 -1.1339 6 6 1.7977 -0.1755 -2.4793 7 7 1.9118 -0.9306 -3.5501 8 14 1.3103 1.6197 -2.6500 9 1 1.1106 1.9440 -4.0853 10 1 0.0476 1.8625 -1.9073 11 1 2.3854 2.4795 -2.0932 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 1 1.2842 0.9622 2.2842 15 6 1.9776 -0.5676 3.6686 16 6 3.4585 -0.8236 4.0199 17 6 4.2226 0.3052 3.3614 18 6 5.5079 0.7688 3.5859 19 6 6.0025 1.8311 2.8511 20 9 7.2569 2.2816 3.0727 21 6 5.2094 2.4330 1.8886 22 6 3.9275 1.9712 1.6658 23 6 3.4318 0.9064 2.4002 24 1 -0.3633 0.4118 -0.9416 25 1 -0.3634 -1.0213 0.1142 26 1 -0.3633 0.6097 0.8273 27 1 2.2363 -1.8411 -3.4691 28 1 2.9172 -1.1206 1.0288 29 1 1.4940 0.0309 4.4406 30 1 1.4443 -1.5062 3.5175 31 1 3.6009 -0.7971 5.1002 32 1 3.7815 -1.7847 3.6198 33 1 6.1259 0.2997 4.3372 34 1 5.5928 3.2629 1.3136 35 1 3.3096 2.4407 0.9148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309392915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:05 Heat of formation + Delta-G solvation = -26.958195 kcal Electronic energy + Delta-G solvation = -18131.052405 eV Core-core repulsion = 15235.713096 eV Total energy + Delta-G solvation = -2895.339309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.81506 -40.09743 -36.34495 -34.50482 -32.27981 -30.88742 -28.71417 -28.58041 -25.79086 -24.42894 -22.79777 -21.05963 -20.33680 -19.67416 -17.57518 -16.96242 -16.43970 -15.67642 -15.60046 -15.19916 -14.47019 -14.01923 -13.66428 -13.51041 -13.21326 -12.76501 -12.73662 -12.22758 -12.14776 -11.79124 -11.60576 -11.53454 -11.07670 -10.80785 -10.71725 -10.41549 -10.40120 -10.03796 -9.71821 -8.92997 -8.83295 -8.46399 -8.26133 -7.54966 -6.49274 -4.10349 1.25542 1.33509 3.34195 3.36422 3.55404 3.67048 4.18291 4.44162 4.59831 4.69095 4.98229 5.03570 5.20491 5.26342 5.28417 5.34342 5.45516 5.70461 5.90284 5.96762 6.01899 6.10787 6.19608 6.26717 6.30989 6.36384 6.48091 6.65649 6.72406 6.78353 6.91598 7.01012 7.43829 7.68911 8.06320 8.35802 8.42596 8.91666 9.58447 10.90719 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.007400 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.118300 B = 3782.719359 C = 4517.226121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.187 3.813 3 H -0.005 1.005 4 C -0.604 4.604 5 H 0.059 0.941 6 C 0.033 3.967 7 N -0.904 5.904 8 Si 1.044 2.956 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.661 5.661 13 C 0.121 3.879 14 H 0.082 0.918 15 C -0.111 4.111 16 C -0.080 4.080 17 C -0.065 4.065 18 C -0.149 4.149 19 C 0.092 3.908 20 F -0.144 7.144 21 C -0.156 4.156 22 C -0.066 4.066 23 C -0.126 4.126 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.018 0.982 27 H 0.268 0.732 28 H 0.339 0.661 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 4.831 14.852 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.079 3.921 3 H 0.013 0.987 4 C -0.642 4.642 5 H 0.077 0.923 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.872 3.128 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.290 5.290 13 C 0.010 3.990 14 H 0.100 0.900 15 C -0.149 4.149 16 C -0.117 4.117 17 C -0.066 4.066 18 C -0.167 4.167 19 C 0.073 3.927 20 F -0.123 7.123 21 C -0.174 4.174 22 C -0.084 4.084 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.363 5.714 13.885 15.199 hybrid contribution 1.703 -0.499 0.782 1.939 sum 4.066 5.215 14.666 16.088 Atomic orbital electron populations 1.22148 0.98289 1.00366 0.98814 1.19450 0.92004 0.92535 0.88155 0.98736 1.22058 1.40808 1.10137 0.91240 0.92276 1.25690 0.94606 1.04927 0.92091 1.70850 1.41509 1.09860 1.31608 0.84056 0.77089 0.75440 0.76165 1.21078 1.19927 1.21158 1.60888 1.32376 1.30587 1.05168 1.21176 0.91553 0.93149 0.93134 0.90020 1.22348 0.95079 1.01522 0.95920 1.21087 0.94685 0.96198 0.99756 1.20457 0.92788 0.96855 0.96492 1.20455 0.96282 0.97825 1.02181 1.17472 0.80181 0.96441 0.98599 1.91471 1.38247 1.88500 1.94089 1.21021 0.94780 1.02359 0.99269 1.20632 0.94577 0.95258 0.97957 1.21633 0.99399 0.95732 0.96064 0.92938 0.93078 0.96333 0.92174 0.84226 0.91277 0.89246 0.90874 0.89767 0.85342 0.84827 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.04 37.16 0.34 -2.69 16 2 C 0.19 4.31 2.03 -68.86 -0.14 4.17 16 3 H 0.00 -0.11 5.48 -51.93 -0.28 -0.40 16 4 C -0.60 -16.61 8.83 -34.44 -0.30 -16.91 16 5 H 0.06 1.76 7.92 -52.48 -0.42 1.35 16 6 C 0.03 0.92 5.29 -17.82 -0.09 0.83 16 7 N -0.90 -27.51 13.69 55.43 0.76 -26.75 16 8 Si 1.04 24.78 26.29 -169.99 -4.47 20.31 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -5.98 5.75 56.52 0.33 -5.66 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.66 -13.11 6.09 -101.07 -0.62 -13.73 16 13 C 0.12 1.96 2.96 -67.83 -0.20 1.76 16 14 H 0.08 1.35 7.24 -51.93 -0.38 0.98 16 15 C -0.11 -1.43 6.78 -25.33 -0.17 -1.61 16 16 C -0.08 -0.97 6.77 -26.85 -0.18 -1.15 16 17 C -0.07 -0.93 6.14 -104.21 -0.64 -1.57 16 18 C -0.15 -2.05 10.02 -39.47 -0.40 -2.45 16 19 C 0.09 1.36 7.30 -39.46 -0.29 1.07 16 20 F -0.14 -2.10 17.27 2.25 0.04 -2.06 16 21 C -0.16 -2.32 10.03 -39.55 -0.40 -2.71 16 22 C -0.07 -1.06 9.75 -39.54 -0.39 -1.45 16 23 C -0.13 -2.03 5.40 -104.19 -0.56 -2.59 16 24 H 0.05 1.20 4.88 -51.93 -0.25 0.94 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.27 8.15 8.73 -40.82 -0.36 7.80 16 28 H 0.34 7.05 7.97 -39.29 -0.31 6.73 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 2.13 7.39 -52.49 -0.39 1.74 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -29.14 287.59 -7.99 -37.12 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.61 Total: 6.07 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -3.42 Total: -25.29 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.14 Total: -40.48 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -4.47 Total: 20.31 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.14 -7.99 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309392915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.166 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds