Wall clock time and date at job start Mon Mar 30 2020 06:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47025 * 2 1 4 4 C 1.50696 * 109.46918 * 239.99859 * 2 1 3 5 5 H 1.08003 * 119.99899 * 245.64075 * 4 2 1 6 6 C 1.37873 * 120.00136 * 65.63984 * 4 2 1 7 7 N 1.31514 * 120.00179 * 197.74043 * 6 4 2 8 8 Si 1.86801 * 119.99996 * 17.46545 * 6 4 2 9 9 H 1.48495 * 109.47113 * 180.27460 * 8 6 4 10 10 H 1.48498 * 109.46843 * 300.27401 * 8 6 4 11 11 H 1.48496 * 109.47171 * 60.27464 * 8 6 4 12 12 N 1.46904 * 109.46972 * 119.99997 * 2 1 3 13 13 C 1.46901 * 111.00072 * 275.00106 * 12 2 1 14 14 H 1.09006 * 110.26714 * 32.92182 * 13 12 2 15 15 C 1.54340 * 110.30677 * 154.99944 * 13 12 2 16 16 C 1.54343 * 102.39482 * 92.56625 * 15 13 12 17 17 C 1.51381 * 105.16654 * 26.35446 * 16 15 13 18 18 C 1.38463 * 130.36286 * 162.82828 * 17 16 15 19 19 C 1.38322 * 120.19650 * 179.97438 * 18 17 16 20 20 F 1.35106 * 120.06184 * 179.97438 * 19 18 17 21 21 C 1.38479 * 119.88081 * 0.02562 * 19 18 17 22 22 C 1.38069 * 119.90678 * 0.02562 * 21 19 18 23 23 C 1.38228 * 109.75986 * 342.81046 * 17 16 15 24 24 H 1.09004 * 109.47002 * 66.38014 * 1 2 3 25 25 H 1.08999 * 109.47573 * 186.38286 * 1 2 3 26 26 H 1.09005 * 109.47121 * 306.38560 * 1 2 3 27 27 H 0.97004 * 119.99745 * 354.60991 * 7 6 4 28 28 H 1.00894 * 111.00260 * 151.04195 * 12 2 1 29 29 H 1.09000 * 110.82301 * 210.79493 * 15 13 12 30 30 H 1.09001 * 110.82051 * 334.14862 * 15 13 12 31 31 H 1.08994 * 110.30147 * 145.27796 * 16 15 13 32 32 H 1.09000 * 110.30232 * 267.33872 * 16 15 13 33 33 H 1.08005 * 119.90452 * 359.94999 * 18 17 16 34 34 H 1.07999 * 120.04845 * 179.97438 * 21 19 18 35 35 H 1.07992 * 119.87213 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5760 -1.6386 -1.1339 6 6 1.7977 -0.1755 -2.4793 7 7 1.9118 -0.9306 -3.5501 8 14 1.3103 1.6197 -2.6500 9 1 1.1106 1.9440 -4.0853 10 1 0.0476 1.8625 -1.9073 11 1 2.3854 2.4795 -2.0932 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 1 1.2842 0.9622 2.2842 15 6 1.9776 -0.5676 3.6686 16 6 3.4585 -0.8236 4.0199 17 6 4.2226 0.3052 3.3614 18 6 5.5079 0.7688 3.5859 19 6 6.0025 1.8311 2.8511 20 9 7.2569 2.2816 3.0727 21 6 5.2094 2.4330 1.8886 22 6 3.9275 1.9712 1.6658 23 6 3.4318 0.9064 2.4002 24 1 -0.3633 0.4118 -0.9416 25 1 -0.3634 -1.0213 0.1142 26 1 -0.3633 0.6097 0.8273 27 1 2.2363 -1.8411 -3.4691 28 1 2.9172 -1.1206 1.0288 29 1 1.4940 0.0309 4.4406 30 1 1.4443 -1.5062 3.5175 31 1 3.6009 -0.7971 5.1002 32 1 3.7815 -1.7847 3.6198 33 1 6.1259 0.2997 4.3372 34 1 5.5928 3.2629 1.3136 35 1 3.3096 2.4407 0.9148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309392915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:05 Heat of formation + Delta-G solvation = -44.663261 kcal Electronic energy + Delta-G solvation = -18131.820154 eV Core-core repulsion = 15235.713096 eV Total energy + Delta-G solvation = -2896.107058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.95250 -41.26096 -37.80224 -35.98955 -34.14538 -32.24824 -30.21412 -29.71752 -27.24995 -26.28129 -23.93205 -22.26212 -21.73091 -21.26726 -19.60942 -18.11179 -17.64424 -16.93194 -16.86183 -16.57360 -15.82119 -15.41852 -15.24300 -14.79856 -14.69301 -14.34854 -13.92535 -13.84792 -13.45099 -13.36659 -13.01570 -12.84206 -12.57059 -12.33444 -11.96871 -11.85240 -11.78452 -11.67783 -11.51584 -10.99689 -10.41052 -9.95738 -9.69155 -9.08265 -8.73830 -6.36904 0.09069 0.20634 1.43343 1.49595 1.68579 2.46619 2.51211 3.05594 3.07826 3.46250 3.46901 3.72375 3.92787 4.14832 4.16953 4.26623 4.33408 4.56652 4.66150 4.77426 4.83586 4.88090 4.93225 4.97706 5.05682 5.09668 5.12307 5.19552 5.29640 5.40305 5.55288 5.63752 5.80750 5.88379 6.02456 6.28965 6.66189 6.76050 7.41286 8.63410 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.007400 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.118300 B = 3782.719359 C = 4517.226121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.191 3.809 3 H -0.001 1.001 4 C -0.604 4.604 5 H 0.020 0.980 6 C -0.019 4.019 7 N -0.939 5.939 8 Si 1.079 2.921 9 H -0.291 1.291 10 H -0.240 1.240 11 H -0.265 1.265 12 N -0.663 5.663 13 C 0.116 3.884 14 H 0.080 0.920 15 C -0.103 4.103 16 C -0.076 4.076 17 C -0.064 4.064 18 C -0.146 4.146 19 C 0.085 3.915 20 F -0.144 7.144 21 C -0.162 4.162 22 C -0.084 4.084 23 C -0.146 4.146 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.251 0.749 28 H 0.330 0.670 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 6.049 17.350 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.081 3.919 3 H 0.017 0.983 4 C -0.642 4.642 5 H 0.038 0.962 6 C -0.217 4.217 7 N -0.575 5.575 8 Si 0.900 3.100 9 H -0.217 1.217 10 H -0.164 1.164 11 H -0.190 1.190 12 N -0.291 5.291 13 C 0.006 3.994 14 H 0.098 0.902 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.065 4.065 18 C -0.165 4.165 19 C 0.066 3.934 20 F -0.123 7.123 21 C -0.180 4.180 22 C -0.103 4.103 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.148 0.852 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.121 6.922 16.426 17.951 hybrid contribution 1.861 -0.939 0.066 2.085 sum 3.982 5.983 16.493 17.991 Atomic orbital electron populations 1.22040 0.97066 1.00436 0.99627 1.19298 0.92816 0.92171 0.87607 0.98303 1.22306 1.39600 1.08711 0.93551 0.96186 1.27107 0.94331 1.08358 0.91898 1.70987 1.44258 1.09431 1.32812 0.83651 0.78998 0.70920 0.76406 1.21714 1.16438 1.19011 1.60857 1.31874 1.31387 1.04969 1.21327 0.91870 0.93083 0.93107 0.90170 1.22333 0.96015 1.01256 0.94428 1.21132 0.93504 0.95161 1.01456 1.20728 0.92814 0.96993 0.95925 1.20735 0.96341 0.97213 1.02203 1.17627 0.80206 0.96814 0.98766 1.91472 1.38184 1.88548 1.94074 1.21181 0.94459 1.02837 0.99573 1.20705 0.95210 0.95987 0.98393 1.21697 0.99665 0.96326 0.97121 0.93910 0.94029 0.93031 0.93957 0.85247 0.88869 0.89426 0.87809 0.89738 0.82786 0.83471 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 9.04 71.98 0.65 -4.97 16 2 C 0.19 8.63 2.03 44.17 0.09 8.72 16 3 H 0.00 -0.02 5.48 -2.39 -0.01 -0.04 16 4 C -0.60 -33.87 8.83 25.60 0.23 -33.65 16 5 H 0.02 1.24 7.92 -2.91 -0.02 1.22 16 6 C -0.02 -1.07 5.29 84.65 0.45 -0.62 16 7 N -0.94 -58.96 13.69 21.45 0.29 -58.67 16 8 Si 1.08 49.23 26.29 68.60 1.80 51.03 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.24 -9.66 5.75 99.48 0.57 -9.09 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 N -0.66 -25.75 6.09 -473.69 -2.89 -28.64 16 13 C 0.12 3.55 2.96 44.84 0.13 3.68 16 14 H 0.08 2.45 7.24 -2.38 -0.02 2.44 16 15 C -0.10 -2.33 6.78 31.50 0.21 -2.12 16 16 C -0.08 -1.58 6.77 30.52 0.21 -1.37 16 17 C -0.06 -1.66 6.14 -19.60 -0.12 -1.78 16 18 C -0.15 -3.64 10.02 22.34 0.22 -3.42 16 19 C 0.09 2.34 7.30 22.35 0.16 2.51 16 20 F -0.14 -3.92 17.27 44.97 0.78 -3.14 16 21 C -0.16 -4.61 10.03 22.29 0.22 -4.39 16 22 C -0.08 -2.64 9.75 22.30 0.22 -2.42 16 23 C -0.15 -4.45 5.40 -19.58 -0.11 -4.55 16 24 H 0.04 1.86 4.88 -2.39 -0.01 1.85 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.81 7.57 -2.38 -0.02 1.79 16 27 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 28 H 0.33 13.78 7.97 -89.70 -0.71 13.06 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.12 3.92 7.39 -2.91 -0.02 3.90 16 Total: -1.00 -64.04 287.59 2.77 -61.27 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.21 Total: 22.52 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 2.57 Total: -44.38 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -2.59 Total: -87.31 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.80 Total: 51.03 kcal Total: -64.04 2.77 -61.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309392915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.607 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds