Wall clock time and date at job start Mon Mar 30 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47384 * 2 1 4 4 C 1.50699 * 109.47291 * 120.00069 * 2 1 3 5 5 H 1.07997 * 120.00292 * 119.99362 * 4 2 1 6 6 C 1.37882 * 120.00100 * 300.00091 * 4 2 1 7 7 N 1.31517 * 119.99510 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00261 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47239 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47226 * 119.99727 * 8 6 4 11 11 H 1.48505 * 109.47117 * 239.99555 * 8 6 4 12 12 N 1.46903 * 109.47036 * 239.99777 * 2 1 3 13 13 C 1.46896 * 111.00091 * 86.35183 * 12 2 1 14 14 H 1.09002 * 110.34389 * 326.30594 * 13 12 2 15 15 C 1.54340 * 110.30410 * 88.43061 * 13 12 2 16 16 C 1.54346 * 102.39416 * 92.57126 * 15 13 12 17 17 C 1.51379 * 105.16716 * 26.35590 * 16 15 13 18 18 C 1.38458 * 130.36330 * 162.80663 * 17 16 15 19 19 C 1.38326 * 120.19375 * 179.97438 * 18 17 16 20 20 F 1.35100 * 120.06269 * 180.02562 * 19 18 17 21 21 C 1.38481 * 119.87972 * 359.69408 * 19 18 17 22 22 C 1.38064 * 119.90768 * 0.60261 * 21 19 18 23 23 C 1.38234 * 109.75682 * 342.80644 * 17 16 15 24 24 H 1.09004 * 109.47198 * 305.63810 * 1 2 3 25 25 H 1.08998 * 109.47378 * 65.64074 * 1 2 3 26 26 H 1.09001 * 109.47185 * 185.63907 * 1 2 3 27 27 H 0.97005 * 119.99838 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00137 * 322.39492 * 12 2 1 29 29 H 1.09008 * 110.82702 * 210.79683 * 15 13 12 30 30 H 1.09003 * 110.82297 * 334.14801 * 15 13 12 31 31 H 1.08996 * 110.30555 * 145.28288 * 16 15 13 32 32 H 1.08999 * 110.29903 * 267.33649 * 16 15 13 33 33 H 1.07995 * 119.90468 * 359.97438 * 18 17 16 34 34 H 1.08007 * 120.04771 * 180.28574 * 21 19 18 35 35 H 1.07992 * 119.87739 * 179.68650 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8166 12 7 2.0196 -0.6926 -1.1994 13 6 2.1128 0.2299 -2.3388 14 1 1.3205 0.9768 -2.2875 15 6 3.4951 0.9162 -2.3606 16 6 4.3136 -0.0163 -3.2786 17 6 3.2944 -0.6766 -4.1823 18 6 3.4610 -1.3478 -5.3818 19 6 2.3661 -1.8774 -6.0407 20 9 2.5318 -2.5323 -7.2107 21 6 1.1005 -1.7411 -5.4953 22 6 0.9340 -1.0664 -4.3023 23 6 2.0298 -0.5352 -3.6423 24 1 -0.3634 0.5988 0.8352 25 1 -0.3634 0.4239 -0.9361 26 1 -0.3633 -1.0227 0.1010 27 1 0.7089 1.1614 3.4844 28 1 1.4366 -1.4852 -1.4227 29 1 3.4245 1.9165 -2.7881 30 1 3.9247 0.9541 -1.3595 31 1 5.0239 0.5624 -3.8689 32 1 4.8375 -0.7659 -2.6857 33 1 4.4488 -1.4582 -5.8043 34 1 0.2442 -2.1576 -6.0051 35 1 -0.0538 -0.9560 -3.8801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309392918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:12 Heat of formation + Delta-G solvation = -25.734647 kcal Electronic energy + Delta-G solvation = -17804.639672 eV Core-core repulsion = 14909.353420 eV Total energy + Delta-G solvation = -2895.286252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.85414 -39.98994 -36.35016 -34.32220 -32.23815 -30.83484 -28.59137 -28.07755 -25.37040 -24.98276 -22.82031 -21.10142 -20.67453 -19.47681 -17.01004 -16.64506 -16.34242 -15.65491 -15.42224 -15.14601 -14.59125 -14.10819 -13.59559 -13.29758 -13.19097 -12.79221 -12.59564 -12.03868 -11.85260 -11.50803 -11.27478 -11.24809 -10.94053 -10.72941 -10.69640 -10.58669 -10.45726 -10.14018 -9.86249 -8.98668 -8.85493 -8.40228 -8.38530 -7.26392 -6.00292 -4.02873 1.23213 1.30477 3.30762 3.38821 3.44082 3.64313 4.19344 4.43402 4.59890 4.77324 4.94399 5.20716 5.31420 5.32118 5.35829 5.37596 5.59318 5.80781 6.00507 6.04041 6.08722 6.17096 6.24726 6.35609 6.43713 6.62638 6.68468 6.76092 6.80569 6.97789 7.06594 7.34289 7.70265 7.87595 8.24322 8.49442 8.58279 9.04785 9.62587 11.07164 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037356 B = 0.004964 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.361091 B = 5639.641579 C = 5798.314675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.669 5.669 13 C 0.124 3.876 14 H 0.049 0.951 15 C -0.110 4.110 16 C -0.074 4.074 17 C -0.052 4.052 18 C -0.149 4.149 19 C 0.092 3.908 20 F -0.145 7.145 21 C -0.159 4.159 22 C -0.076 4.076 23 C -0.099 4.099 24 H 0.085 0.915 25 H 0.004 0.996 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.328 0.672 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -1.541 -14.087 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.299 5.299 13 C 0.014 3.986 14 H 0.067 0.933 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.053 4.053 18 C -0.168 4.168 19 C 0.072 3.928 20 F -0.124 7.124 21 C -0.177 4.177 22 C -0.094 4.094 23 C -0.099 4.099 24 H 0.104 0.896 25 H 0.023 0.977 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.916 -1.376 -13.793 14.165 hybrid contribution -0.814 -0.508 0.389 1.035 sum 2.103 -1.884 -13.404 13.698 Atomic orbital electron populations 1.22429 1.00695 1.00197 0.99326 1.19257 0.89565 0.94490 0.86412 0.94663 1.21172 1.30200 1.12393 0.89472 0.91885 1.24945 0.95335 0.95189 0.99029 1.69907 1.37394 1.23198 1.23233 0.86467 0.78510 0.79669 0.82898 1.19752 1.21157 1.21256 1.60992 1.57236 1.09095 1.02592 1.20952 0.97004 0.93630 0.86968 0.93338 1.22332 0.95039 0.96630 1.00812 1.21042 0.96093 0.98433 0.95560 1.20531 0.96191 0.95495 0.93034 1.20502 0.98205 1.01768 0.96286 1.17476 0.94462 0.97402 0.83434 1.91469 1.96416 1.79000 1.45475 1.20939 0.95864 1.03176 0.97762 1.20524 0.98851 0.96279 0.93777 1.20955 0.93156 0.98912 0.96904 0.89585 0.97730 0.95087 0.93153 0.85509 0.91818 0.88961 0.91215 0.89265 0.85256 0.84950 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.85 37.16 0.33 -3.57 16 2 C 0.21 5.06 2.42 -68.86 -0.17 4.90 16 3 H 0.04 0.93 7.79 -51.93 -0.40 0.52 16 4 C -0.49 -13.29 8.84 -34.44 -0.30 -13.60 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.20 11.38 55.43 0.63 -24.57 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.67 -13.59 6.05 -101.08 -0.61 -14.20 16 13 C 0.12 2.14 2.94 -67.84 -0.20 1.95 16 14 H 0.05 0.88 7.28 -51.93 -0.38 0.50 16 15 C -0.11 -1.71 6.69 -25.32 -0.17 -1.88 16 16 C -0.07 -1.01 6.77 -26.84 -0.18 -1.20 16 17 C -0.05 -0.74 6.14 -104.21 -0.64 -1.38 16 18 C -0.15 -1.97 10.02 -39.47 -0.40 -2.37 16 19 C 0.09 1.23 7.30 -39.46 -0.29 0.94 16 20 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 21 C -0.16 -2.02 10.03 -39.56 -0.40 -2.42 16 22 C -0.08 -1.04 10.04 -39.54 -0.40 -1.44 16 23 C -0.10 -1.51 5.45 -104.19 -0.57 -2.07 16 24 H 0.09 2.23 6.24 -51.93 -0.32 1.91 16 25 H 0.00 0.08 7.53 -51.93 -0.39 -0.31 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.33 6.53 8.13 -39.29 -0.32 6.21 16 29 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.09 1.62 8.08 -51.93 -0.42 1.20 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -27.65 294.26 -8.74 -36.39 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.74 Total: 4.38 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -3.47 Total: -20.72 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.02 Total: -38.77 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.65 -8.74 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309392918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.660 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds