Wall clock time and date at job start Mon Mar 30 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47384 * 2 1 4 4 C 1.50699 * 109.47291 * 120.00069 * 2 1 3 5 5 H 1.07997 * 120.00292 * 119.99362 * 4 2 1 6 6 C 1.37882 * 120.00100 * 300.00091 * 4 2 1 7 7 N 1.31517 * 119.99510 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00261 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47239 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47226 * 119.99727 * 8 6 4 11 11 H 1.48505 * 109.47117 * 239.99555 * 8 6 4 12 12 N 1.46903 * 109.47036 * 239.99777 * 2 1 3 13 13 C 1.46896 * 111.00091 * 86.35183 * 12 2 1 14 14 H 1.09002 * 110.34389 * 326.30594 * 13 12 2 15 15 C 1.54340 * 110.30410 * 88.43061 * 13 12 2 16 16 C 1.54346 * 102.39416 * 92.57126 * 15 13 12 17 17 C 1.51379 * 105.16716 * 26.35590 * 16 15 13 18 18 C 1.38458 * 130.36330 * 162.80663 * 17 16 15 19 19 C 1.38326 * 120.19375 * 179.97438 * 18 17 16 20 20 F 1.35100 * 120.06269 * 180.02562 * 19 18 17 21 21 C 1.38481 * 119.87972 * 359.69408 * 19 18 17 22 22 C 1.38064 * 119.90768 * 0.60261 * 21 19 18 23 23 C 1.38234 * 109.75682 * 342.80644 * 17 16 15 24 24 H 1.09004 * 109.47198 * 305.63810 * 1 2 3 25 25 H 1.08998 * 109.47378 * 65.64074 * 1 2 3 26 26 H 1.09001 * 109.47185 * 185.63907 * 1 2 3 27 27 H 0.97005 * 119.99838 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00137 * 322.39492 * 12 2 1 29 29 H 1.09008 * 110.82702 * 210.79683 * 15 13 12 30 30 H 1.09003 * 110.82297 * 334.14801 * 15 13 12 31 31 H 1.08996 * 110.30555 * 145.28288 * 16 15 13 32 32 H 1.08999 * 110.29903 * 267.33649 * 16 15 13 33 33 H 1.07995 * 119.90468 * 359.97438 * 18 17 16 34 34 H 1.08007 * 120.04771 * 180.28574 * 21 19 18 35 35 H 1.07992 * 119.87739 * 179.68650 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8166 12 7 2.0196 -0.6926 -1.1994 13 6 2.1128 0.2299 -2.3388 14 1 1.3205 0.9768 -2.2875 15 6 3.4951 0.9162 -2.3606 16 6 4.3136 -0.0163 -3.2786 17 6 3.2944 -0.6766 -4.1823 18 6 3.4610 -1.3478 -5.3818 19 6 2.3661 -1.8774 -6.0407 20 9 2.5318 -2.5323 -7.2107 21 6 1.1005 -1.7411 -5.4953 22 6 0.9340 -1.0664 -4.3023 23 6 2.0298 -0.5352 -3.6423 24 1 -0.3634 0.5988 0.8352 25 1 -0.3634 0.4239 -0.9361 26 1 -0.3633 -1.0227 0.1010 27 1 0.7089 1.1614 3.4844 28 1 1.4366 -1.4852 -1.4227 29 1 3.4245 1.9165 -2.7881 30 1 3.9247 0.9541 -1.3595 31 1 5.0239 0.5624 -3.8689 32 1 4.8375 -0.7659 -2.6857 33 1 4.4488 -1.4582 -5.8043 34 1 0.2442 -2.1576 -6.0051 35 1 -0.0538 -0.9560 -3.8801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309392918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:12 Heat of formation + Delta-G solvation = -40.489531 kcal Electronic energy + Delta-G solvation = -17805.279492 eV Core-core repulsion = 14909.353420 eV Total energy + Delta-G solvation = -2895.926072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89024 -41.14814 -37.83933 -35.83395 -33.97164 -32.14802 -29.71102 -29.69226 -27.23922 -26.53776 -23.93405 -22.51443 -22.03205 -20.94581 -18.50643 -18.00640 -17.52548 -17.01411 -16.83508 -16.55295 -16.11409 -15.28255 -14.93183 -14.71904 -14.60442 -14.27705 -13.84029 -13.59004 -13.22995 -13.01908 -12.97554 -12.79194 -12.63383 -12.26701 -12.18605 -12.07885 -11.86639 -11.80810 -11.59492 -10.96480 -10.47431 -9.89510 -9.54822 -8.90038 -8.07877 -6.17767 0.13991 0.27143 1.42745 1.45269 1.56944 2.44894 2.57284 3.13228 3.21291 3.48610 3.60517 3.76825 3.99226 4.15778 4.21920 4.32729 4.38899 4.68168 4.75542 4.79571 4.85598 4.91287 4.99310 5.07001 5.10456 5.15306 5.22091 5.26621 5.35642 5.50619 5.65665 5.72237 5.84355 5.92937 6.29473 6.66537 6.82779 6.96871 7.52050 8.98025 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037356 B = 0.004964 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.361091 B = 5639.641579 C = 5798.314675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.510 4.510 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.670 5.670 13 C 0.123 3.877 14 H 0.036 0.964 15 C -0.111 4.111 16 C -0.067 4.067 17 C -0.057 4.057 18 C -0.147 4.147 19 C 0.087 3.913 20 F -0.144 7.144 21 C -0.154 4.154 22 C -0.079 4.079 23 C -0.116 4.116 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -2.340 -15.377 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.109 3.891 3 H 0.025 0.975 4 C -0.549 4.549 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.300 5.300 13 C 0.013 3.987 14 H 0.054 0.946 15 C -0.149 4.149 16 C -0.104 4.104 17 C -0.058 4.058 18 C -0.166 4.166 19 C 0.068 3.932 20 F -0.123 7.123 21 C -0.172 4.172 22 C -0.097 4.097 23 C -0.117 4.117 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.339 -2.179 -15.100 15.618 hybrid contribution -0.955 -0.255 0.706 1.215 sum 2.384 -2.435 -14.394 14.792 Atomic orbital electron populations 1.22233 1.00119 0.99692 0.99298 1.18973 0.89836 0.92896 0.87352 0.97486 1.21448 1.30213 1.12270 0.90971 0.92874 1.25669 0.95525 0.95854 1.01743 1.70026 1.38182 1.24251 1.23827 0.85512 0.78011 0.78618 0.79475 1.19438 1.20791 1.20809 1.60856 1.56791 1.09507 1.02800 1.20971 0.97545 0.93155 0.87026 0.94614 1.22303 0.94371 0.98060 1.00139 1.20982 0.96114 0.98059 0.95262 1.20584 0.95779 0.95879 0.93526 1.20685 0.99303 1.00936 0.95670 1.17630 0.94841 0.97260 0.83458 1.91477 1.96431 1.78949 1.45397 1.21175 0.96585 1.02285 0.97194 1.20674 0.98913 0.96079 0.94083 1.20830 0.94424 1.00160 0.96304 0.92317 0.95496 0.95109 0.93103 0.85313 0.90123 0.91542 0.88409 0.89954 0.83156 0.82572 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.26 8.85 71.98 0.64 -6.62 16 2 C 0.22 10.72 2.42 44.17 0.11 10.83 16 3 H 0.01 0.39 7.79 -2.39 -0.02 0.37 16 4 C -0.51 -27.91 8.84 25.60 0.23 -27.68 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -52.58 11.38 21.45 0.24 -52.33 16 8 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.67 -27.45 6.05 -473.71 -2.86 -30.32 16 13 C 0.12 4.22 2.94 44.84 0.13 4.35 16 14 H 0.04 1.31 7.28 -2.39 -0.02 1.29 16 15 C -0.11 -3.42 6.69 31.51 0.21 -3.21 16 16 C -0.07 -1.73 6.77 30.52 0.21 -1.53 16 17 C -0.06 -1.52 6.14 -19.60 -0.12 -1.64 16 18 C -0.15 -3.51 10.02 22.34 0.22 -3.28 16 19 C 0.09 2.11 7.30 22.35 0.16 2.27 16 20 F -0.14 -3.46 17.27 44.97 0.78 -2.68 16 21 C -0.15 -3.52 10.03 22.29 0.22 -3.29 16 22 C -0.08 -2.02 10.04 22.29 0.22 -1.80 16 23 C -0.12 -3.42 5.45 -19.59 -0.11 -3.52 16 24 H 0.06 3.10 6.24 -2.38 -0.01 3.08 16 25 H 0.03 1.10 7.53 -2.39 -0.02 1.08 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 28 H 0.33 13.11 8.13 -89.69 -0.73 12.38 16 29 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -58.76 294.26 3.12 -55.64 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.36 Total: 18.07 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 2.58 Total: -34.12 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.62 Total: -82.65 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -58.76 3.12 -55.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309392918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.155 kcal (2) G-P(sol) polarization free energy of solvation -58.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds