Wall clock time and date at job start Mon Mar 30 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.70784 * 2 1 4 4 C 1.53326 * 109.64515 * 239.45741 * 2 1 3 5 5 C 1.52737 * 108.32623 * 170.33777 * 4 2 1 6 6 C 1.50629 * 110.57857 * 51.11635 * 5 4 2 7 7 C 1.39137 * 117.74759 * 162.48376 * 6 5 4 8 8 F 1.35099 * 119.75101 * 359.68095 * 7 6 5 9 9 C 1.38159 * 120.49006 * 179.70887 * 7 6 5 10 10 C 1.38224 * 119.74111 * 359.97438 * 9 7 6 11 11 C 1.37939 * 119.80046 * 0.10159 * 10 9 7 12 12 C 1.37624 * 122.58306 * 342.36261 * 6 5 4 13 13 C 1.50638 * 122.56519 * 0.44751 * 12 6 5 14 14 H 1.09002 * 109.25411 * 222.16247 * 13 12 6 15 15 N 1.46506 * 109.24692 * 102.70045 * 13 12 6 16 16 C 1.36940 * 119.99790 * 84.46876 * 15 13 12 17 17 H 1.07997 * 119.99896 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99813 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00010 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00112 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46977 * 90.00029 * 20 18 16 22 22 H 1.48497 * 109.47180 * 210.00278 * 20 18 16 23 23 H 1.48507 * 109.46829 * 329.99951 * 20 18 16 24 24 H 1.08997 * 109.46963 * 299.45806 * 1 2 3 25 25 H 1.08996 * 109.47209 * 59.46241 * 1 2 3 26 26 H 1.09001 * 109.46915 * 179.46262 * 1 2 3 27 27 H 1.08996 * 109.69136 * 50.63375 * 4 2 1 28 28 H 1.08994 * 109.74083 * 290.06764 * 4 2 1 29 29 H 1.08999 * 109.25704 * 290.83021 * 5 4 2 30 30 H 1.09000 * 109.25162 * 171.39693 * 5 4 2 31 31 H 1.08002 * 120.12343 * 179.97438 * 9 7 6 32 32 H 1.08000 * 120.10061 * 180.13333 * 10 9 7 33 33 H 1.08003 * 119.69468 * 179.97438 * 11 10 9 34 34 H 0.96995 * 119.99845 * 264.45734 * 15 13 12 35 35 H 0.96999 * 120.00106 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0456 -0.7338 -1.2437 5 6 3.5532 -0.5099 -1.3430 6 6 4.2252 -0.8435 -0.0369 7 6 5.6002 -1.0557 -0.0515 8 9 6.2802 -0.9649 -1.2153 9 6 6.2751 -1.3591 1.1153 10 6 5.5789 -1.4520 2.3058 11 6 4.2155 -1.2432 2.3208 12 6 3.5335 -0.9405 1.1490 13 6 2.0444 -0.7308 1.2386 14 1 1.8175 -0.1388 2.1252 15 7 1.3789 -2.0317 1.3431 16 6 1.2479 -2.6376 2.5641 17 1 1.6356 -2.1566 3.4500 18 6 0.6169 -3.8700 2.6632 19 7 0.4915 -4.4526 3.8367 20 14 -0.0542 -4.7017 1.1311 21 1 0.9967 -5.5663 0.5366 22 1 -1.2313 -5.5312 1.4934 23 1 -0.4614 -3.6684 0.1452 24 1 -0.3633 0.5054 0.8948 25 1 -0.3633 0.5221 -0.8851 26 1 -0.3633 -1.0276 -0.0096 27 1 1.5560 -0.3375 -2.1332 28 1 1.8378 -1.8001 -1.1545 29 1 3.7460 0.5341 -1.5902 30 1 3.9599 -1.1459 -2.1292 31 1 7.3424 -1.5232 1.0971 32 1 6.1010 -1.6867 3.2216 33 1 3.6732 -1.3166 3.2519 34 1 1.0310 -2.4638 0.5474 35 1 0.0508 -5.3140 3.9059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309461415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:27 Heat of formation + Delta-G solvation = -21.177672 kcal Electronic energy + Delta-G solvation = -18613.052446 eV Core-core repulsion = 15717.963799 eV Total energy + Delta-G solvation = -2895.088647 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.58118 -39.72692 -36.65918 -34.05088 -31.95091 -31.07826 -29.83178 -28.43874 -26.00327 -23.51486 -22.54057 -21.54410 -21.46725 -18.53524 -17.88252 -16.86268 -15.97655 -15.55399 -15.32051 -14.70548 -14.47142 -13.92009 -13.76890 -13.40861 -13.33025 -13.01141 -12.61068 -12.36626 -11.83777 -11.78155 -11.50992 -11.29404 -11.19576 -10.96097 -10.92826 -10.39113 -10.26643 -10.18260 -9.82100 -9.56299 -9.02756 -8.33906 -8.14166 -7.35059 -5.83603 -3.18151 1.61516 1.65769 3.32634 3.36283 3.41920 4.01751 4.53525 4.60549 4.86184 4.97469 5.11970 5.25675 5.30651 5.43928 5.54791 5.57441 5.62969 5.72671 5.78069 5.92065 6.00008 6.07121 6.13039 6.21567 6.27606 6.43397 6.47428 6.52831 6.55037 6.67737 6.81779 6.85931 7.11128 7.37964 7.91584 8.35061 9.12473 9.85119 10.04616 11.34170 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.008944 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.322097 B = 3129.954057 C = 3718.496925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.074 4.074 6 C -0.112 4.112 7 C 0.079 3.921 8 F -0.149 7.149 9 C -0.166 4.166 10 C -0.102 4.102 11 C -0.100 4.100 12 C -0.050 4.050 13 C 0.219 3.781 14 H 0.070 0.930 15 N -0.733 5.733 16 C -0.243 4.243 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.878 3.122 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.276 1.276 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.364 0.636 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 9.360 -8.281 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.111 4.111 6 C -0.113 4.113 7 C 0.060 3.940 8 F -0.128 7.128 9 C -0.185 4.185 10 C -0.120 4.120 11 C -0.119 4.119 12 C -0.053 4.053 13 C 0.109 3.891 14 H 0.087 0.913 15 N -0.374 5.374 16 C -0.373 4.373 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.708 3.292 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.202 1.202 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.198 0.802 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.433 9.277 -8.063 13.873 hybrid contribution -0.123 -0.999 -1.154 1.532 sum 6.310 8.278 -9.217 13.903 Atomic orbital electron populations 1.21720 0.94537 1.02666 1.00655 1.21417 0.96289 0.98947 0.95092 0.90960 1.21608 0.94254 1.01396 0.97892 1.20323 0.95581 1.01382 0.93796 1.19601 0.91301 1.04016 0.96423 1.17721 0.90020 1.04900 0.81353 1.91414 1.80048 1.94146 1.47210 1.20886 1.00192 1.05420 0.92044 1.20897 0.94602 0.99487 0.97055 1.21341 0.93602 0.97854 0.99067 1.20689 0.98170 0.95451 0.91034 1.19129 0.85405 0.88115 0.96452 0.91256 1.42887 1.67373 1.20138 1.07048 1.19052 1.31712 1.00895 0.85618 0.88970 1.24634 1.00784 0.97245 0.96042 1.69684 1.48286 1.17631 1.22037 0.86657 0.78897 0.79784 0.83836 1.21093 1.21646 1.20172 0.92513 0.93726 0.91806 0.91717 0.91477 0.90927 0.91199 0.85732 0.85682 0.85106 0.80187 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.92 37.16 0.33 -1.75 16 2 C -0.10 -1.50 2.53 -90.59 -0.23 -1.73 16 3 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 4 C -0.11 -1.67 5.24 -26.70 -0.14 -1.81 16 5 C -0.07 -1.07 5.34 -28.05 -0.15 -1.22 16 6 C -0.11 -1.89 5.74 -104.55 -0.60 -2.49 16 7 C 0.08 1.31 7.22 -39.28 -0.28 1.03 16 8 F -0.15 -2.39 16.47 2.25 0.04 -2.36 16 9 C -0.17 -2.56 10.02 -39.62 -0.40 -2.95 16 10 C -0.10 -1.61 10.05 -39.70 -0.40 -2.01 16 11 C -0.10 -1.79 9.21 -39.44 -0.36 -2.16 16 12 C -0.05 -0.90 5.30 -104.62 -0.55 -1.46 16 13 C 0.22 4.03 2.30 -69.25 -0.16 3.87 16 14 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 15 N -0.73 -16.32 4.01 -54.71 -0.22 -16.54 16 16 C -0.24 -6.44 9.92 -15.06 -0.15 -6.59 16 17 H 0.09 2.58 7.38 -52.49 -0.39 2.19 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.30 13.97 55.49 0.78 -27.52 16 20 Si 0.88 21.66 27.73 -169.99 -4.71 16.95 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.10 6.89 -51.93 -0.36 0.75 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.07 1.12 6.76 -51.93 -0.35 0.77 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.13 2.45 7.28 -52.48 -0.38 2.07 16 34 H 0.36 8.13 3.58 -40.82 -0.15 7.98 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 283.07 15.07 4.27 4.27 Total: -1.00 -29.31 283.07 -7.62 -36.93 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.58 Total: 7.37 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.19 Total: -19.09 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.56 Total: -44.06 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.31 -7.62 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.749 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds