Wall clock time and date at job start Mon Mar 30 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.70784 * 2 1 4 4 C 1.53326 * 109.64515 * 239.45741 * 2 1 3 5 5 C 1.52737 * 108.32623 * 170.33777 * 4 2 1 6 6 C 1.50629 * 110.57857 * 51.11635 * 5 4 2 7 7 C 1.39137 * 117.74759 * 162.48376 * 6 5 4 8 8 F 1.35099 * 119.75101 * 359.68095 * 7 6 5 9 9 C 1.38159 * 120.49006 * 179.70887 * 7 6 5 10 10 C 1.38224 * 119.74111 * 359.97438 * 9 7 6 11 11 C 1.37939 * 119.80046 * 0.10159 * 10 9 7 12 12 C 1.37624 * 122.58306 * 342.36261 * 6 5 4 13 13 C 1.50638 * 122.56519 * 0.44751 * 12 6 5 14 14 H 1.09002 * 109.25411 * 222.16247 * 13 12 6 15 15 N 1.46506 * 109.24692 * 102.70045 * 13 12 6 16 16 C 1.36940 * 119.99790 * 84.46876 * 15 13 12 17 17 H 1.07997 * 119.99896 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99813 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00010 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00112 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46977 * 90.00029 * 20 18 16 22 22 H 1.48497 * 109.47180 * 210.00278 * 20 18 16 23 23 H 1.48507 * 109.46829 * 329.99951 * 20 18 16 24 24 H 1.08997 * 109.46963 * 299.45806 * 1 2 3 25 25 H 1.08996 * 109.47209 * 59.46241 * 1 2 3 26 26 H 1.09001 * 109.46915 * 179.46262 * 1 2 3 27 27 H 1.08996 * 109.69136 * 50.63375 * 4 2 1 28 28 H 1.08994 * 109.74083 * 290.06764 * 4 2 1 29 29 H 1.08999 * 109.25704 * 290.83021 * 5 4 2 30 30 H 1.09000 * 109.25162 * 171.39693 * 5 4 2 31 31 H 1.08002 * 120.12343 * 179.97438 * 9 7 6 32 32 H 1.08000 * 120.10061 * 180.13333 * 10 9 7 33 33 H 1.08003 * 119.69468 * 179.97438 * 11 10 9 34 34 H 0.96995 * 119.99845 * 264.45734 * 15 13 12 35 35 H 0.96999 * 120.00106 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0456 -0.7338 -1.2437 5 6 3.5532 -0.5099 -1.3430 6 6 4.2252 -0.8435 -0.0369 7 6 5.6002 -1.0557 -0.0515 8 9 6.2802 -0.9649 -1.2153 9 6 6.2751 -1.3591 1.1153 10 6 5.5789 -1.4520 2.3058 11 6 4.2155 -1.2432 2.3208 12 6 3.5335 -0.9405 1.1490 13 6 2.0444 -0.7308 1.2386 14 1 1.8175 -0.1388 2.1252 15 7 1.3789 -2.0317 1.3431 16 6 1.2479 -2.6376 2.5641 17 1 1.6356 -2.1566 3.4500 18 6 0.6169 -3.8700 2.6632 19 7 0.4915 -4.4526 3.8367 20 14 -0.0542 -4.7017 1.1311 21 1 0.9967 -5.5663 0.5366 22 1 -1.2313 -5.5312 1.4934 23 1 -0.4614 -3.6684 0.1452 24 1 -0.3633 0.5054 0.8948 25 1 -0.3633 0.5221 -0.8851 26 1 -0.3633 -1.0276 -0.0096 27 1 1.5560 -0.3375 -2.1332 28 1 1.8378 -1.8001 -1.1545 29 1 3.7460 0.5341 -1.5902 30 1 3.9599 -1.1459 -2.1292 31 1 7.3424 -1.5232 1.0971 32 1 6.1010 -1.6867 3.2216 33 1 3.6732 -1.3166 3.2519 34 1 1.0310 -2.4638 0.5474 35 1 0.0508 -5.3140 3.9059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309461415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:27 Heat of formation + Delta-G solvation = -36.929417 kcal Electronic energy + Delta-G solvation = -18613.735493 eV Core-core repulsion = 15717.963799 eV Total energy + Delta-G solvation = -2895.771694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84308 -41.06091 -38.00820 -35.72353 -33.65012 -32.48656 -31.43013 -29.73143 -27.44106 -25.12209 -24.07930 -22.91282 -22.71257 -19.92598 -19.78330 -18.18729 -17.32389 -16.85928 -16.59699 -16.45916 -16.01485 -15.51684 -15.13034 -14.73624 -14.61957 -14.47439 -14.20512 -13.65962 -13.46152 -13.13312 -12.92043 -12.82109 -12.65926 -12.50065 -12.22541 -12.07368 -11.91002 -11.50699 -11.43900 -11.10484 -10.93407 -9.67806 -9.46573 -9.29352 -8.00063 -5.31435 0.28596 0.35412 1.35359 1.37886 1.44516 2.48258 2.67734 3.27938 3.36849 3.65140 3.71902 3.79547 3.99823 4.02930 4.13627 4.29453 4.37539 4.44337 4.61134 4.72083 4.80189 4.85863 4.87514 5.03194 5.09083 5.18518 5.20508 5.21573 5.33809 5.38770 5.53418 5.58637 5.73163 5.84900 6.07840 6.23512 7.09432 7.84502 8.04177 9.21113 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.008944 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.322097 B = 3129.954057 C = 3718.496925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.096 0.904 4 C -0.111 4.111 5 C -0.073 4.073 6 C -0.115 4.115 7 C 0.070 3.930 8 F -0.145 7.145 9 C -0.159 4.159 10 C -0.102 4.102 11 C -0.122 4.122 12 C -0.067 4.067 13 C 0.214 3.786 14 H 0.056 0.944 15 N -0.734 5.734 16 C -0.214 4.214 17 H 0.065 0.935 18 C -0.060 4.060 19 N -0.981 5.981 20 Si 0.938 3.062 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.248 1.248 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.109 0.891 34 H 0.366 0.634 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 10.680 -10.995 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.114 0.886 4 C -0.148 4.148 5 C -0.110 4.110 6 C -0.117 4.117 7 C 0.051 3.949 8 F -0.123 7.123 9 C -0.177 4.177 10 C -0.120 4.120 11 C -0.141 4.141 12 C -0.070 4.070 13 C 0.106 3.894 14 H 0.074 0.926 15 N -0.377 5.377 16 C -0.345 4.345 17 H 0.083 0.917 18 C -0.252 4.252 19 N -0.632 5.632 20 Si 0.767 3.233 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.173 1.173 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.200 0.800 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.415 10.658 -10.823 16.903 hybrid contribution -0.277 -1.269 -0.269 1.327 sum 7.138 9.389 -11.092 16.191 Atomic orbital electron populations 1.21698 0.94315 1.01385 1.01940 1.21409 0.96394 0.99696 0.93613 0.88584 1.21602 0.94616 0.99990 0.98596 1.20409 0.95207 1.02900 0.92453 1.19855 0.91755 1.03181 0.96900 1.17867 0.90103 1.05030 0.81870 1.91427 1.79855 1.94106 1.46939 1.21226 1.01646 1.03619 0.91258 1.21139 0.93706 0.98701 0.98490 1.21384 0.94912 0.99312 0.98531 1.20556 0.97802 0.96926 0.91756 1.19306 0.85795 0.86373 0.97966 0.92570 1.42844 1.68234 1.21207 1.05417 1.19016 1.28890 1.00118 0.86493 0.91740 1.25328 1.02559 0.98500 0.98772 1.69851 1.50780 1.18205 1.24404 0.85660 0.77701 0.79035 0.80946 1.21453 1.22437 1.17286 0.93113 0.90600 0.94298 0.88588 0.93751 0.88570 0.90557 0.82817 0.83351 0.87240 0.79969 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.92 71.98 0.64 -3.12 16 2 C -0.09 -2.57 2.53 -10.77 -0.03 -2.60 16 3 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 4 C -0.11 -2.86 5.24 30.62 0.16 -2.70 16 5 C -0.07 -1.86 5.34 29.74 0.16 -1.70 16 6 C -0.12 -3.64 5.74 -19.82 -0.11 -3.75 16 7 C 0.07 2.14 7.22 22.47 0.16 2.30 16 8 F -0.14 -4.17 16.47 44.97 0.74 -3.43 16 9 C -0.16 -4.46 10.02 22.25 0.22 -4.24 16 10 C -0.10 -3.09 10.05 22.20 0.22 -2.87 16 11 C -0.12 -4.44 9.21 22.36 0.21 -4.23 16 12 C -0.07 -2.39 5.30 -19.86 -0.11 -2.50 16 13 C 0.21 7.79 2.30 44.13 0.10 7.90 16 14 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 15 N -0.73 -32.74 4.01 -327.02 -1.31 -34.05 16 16 C -0.21 -11.66 9.92 84.03 0.83 -10.83 16 17 H 0.06 3.81 7.38 -2.91 -0.02 3.79 16 18 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 19 N -0.98 -62.11 13.97 21.65 0.30 -61.80 16 20 Si 0.94 45.31 27.73 68.60 1.90 47.21 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 23 H -0.25 -10.71 6.52 99.48 0.65 -10.07 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.26 6.89 -2.39 -0.02 1.25 16 27 H 0.10 1.91 8.13 -2.39 -0.02 1.89 16 28 H 0.04 1.36 6.76 -2.39 -0.02 1.34 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 1.88 7.85 -2.39 -0.02 1.86 16 31 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.11 4.34 7.28 -2.91 -0.02 4.32 16 34 H 0.37 16.00 3.58 -92.71 -0.33 15.67 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -64.56 283.07 5.27 -59.29 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.70 Total: 24.13 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 2.93 Total: -31.35 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -1.01 Total: -95.86 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.74 Total: -3.43 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Total: -64.56 5.27 -59.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.362 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds