Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.70869 * 2 1 4 4 C 1.53320 * 109.68120 * 239.46236 * 2 1 3 5 5 C 1.52736 * 108.38438 * 170.42123 * 4 2 1 6 6 C 1.50627 * 110.59376 * 51.08189 * 5 4 2 7 7 C 1.39128 * 117.76087 * 162.30224 * 6 5 4 8 8 F 1.35098 * 119.75481 * 359.77175 * 7 6 5 9 9 C 1.38161 * 120.49335 * 179.79262 * 7 6 5 10 10 C 1.38227 * 119.74103 * 359.94143 * 9 7 6 11 11 C 1.37939 * 119.80069 * 0.10557 * 10 9 7 12 12 C 1.37629 * 122.57218 * 342.23549 * 6 5 4 13 13 C 1.50639 * 122.55786 * 0.72894 * 12 6 5 14 14 H 1.08996 * 109.25048 * 102.49892 * 13 12 6 15 15 N 1.46506 * 109.24825 * 221.92079 * 13 12 6 16 16 C 1.36939 * 120.00066 * 274.99902 * 15 13 12 17 17 H 1.08001 * 119.99788 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99885 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00024 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47356 * 119.99940 * 20 18 16 23 23 H 1.48496 * 109.47464 * 240.00214 * 20 18 16 24 24 H 1.09000 * 109.47099 * 180.53717 * 1 2 3 25 25 H 1.09001 * 109.46676 * 300.54072 * 1 2 3 26 26 H 1.09001 * 109.46822 * 60.53643 * 1 2 3 27 27 H 1.09004 * 109.68186 * 50.69420 * 4 2 1 28 28 H 1.09005 * 109.68149 * 290.14589 * 4 2 1 29 29 H 1.08999 * 109.25053 * 171.36698 * 5 4 2 30 30 H 1.08998 * 109.25104 * 290.79004 * 5 4 2 31 31 H 1.07992 * 120.13017 * 179.97438 * 9 7 6 32 32 H 1.08004 * 120.09867 * 180.09037 * 10 9 7 33 33 H 1.08005 * 119.70325 * 180.02562 * 11 10 9 34 34 H 0.96994 * 120.00197 * 95.00087 * 15 13 12 35 35 H 0.97007 * 120.00148 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0464 -0.7335 -1.2434 5 6 3.5544 -0.5117 -1.3420 6 6 4.2256 -0.8459 -0.0357 7 6 5.5997 -1.0637 -0.0502 8 9 6.2802 -0.9759 -1.2140 9 6 6.2734 -1.3697 1.1165 10 6 5.5771 -1.4588 2.3073 11 6 4.2146 -1.2439 2.3224 12 6 3.5337 -0.9392 1.1503 13 6 2.0444 -0.7305 1.2386 14 1 1.5499 -1.6988 1.3161 15 7 1.7378 0.0644 2.4304 16 6 1.5940 -0.5508 3.6454 17 1 1.7070 -1.6219 3.7250 18 6 1.3030 0.2023 4.7745 19 7 1.1648 1.5076 4.6773 20 14 1.1075 -0.6367 6.4320 21 1 1.3094 -2.0993 6.2733 22 1 2.1141 -0.0978 7.3815 23 1 -0.2570 -0.3803 6.9588 24 1 -0.3633 -1.0276 0.0096 25 1 -0.3633 0.5222 0.8851 26 1 -0.3633 0.5055 -0.8948 27 1 1.5579 -0.3364 -2.1332 28 1 1.8372 -1.7996 -1.1541 29 1 3.9606 -1.1483 -2.1280 30 1 3.7487 0.5319 -1.5894 31 1 7.3400 -1.5381 1.0984 32 1 6.0982 -1.6961 3.2230 33 1 3.6721 -1.3134 3.2537 34 1 1.6367 1.0264 2.3590 35 1 0.9618 2.0339 5.4665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309461417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = -26.652226 kcal Electronic energy + Delta-G solvation = -18435.162164 eV Core-core repulsion = 15539.836123 eV Total energy + Delta-G solvation = -2895.326041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.52526 -39.57452 -36.38692 -34.30596 -31.86921 -30.99619 -29.27761 -28.21753 -25.84974 -23.84305 -22.38442 -21.41162 -21.05790 -19.11866 -17.19093 -16.82660 -15.97679 -15.40804 -15.15117 -14.89710 -14.23610 -13.82946 -13.57915 -13.28941 -13.21164 -12.95151 -12.42414 -12.32100 -11.99509 -11.50791 -11.41748 -11.08853 -10.99160 -10.94387 -10.86954 -10.28539 -10.22825 -10.14575 -9.91229 -9.56854 -9.00453 -8.21335 -8.03432 -7.07606 -5.86112 -3.14811 1.70476 1.74019 3.37205 3.43538 3.45600 4.11532 4.51461 4.67178 4.93595 5.05263 5.17007 5.34329 5.40538 5.47759 5.62318 5.71416 5.79300 5.86212 5.97674 6.06017 6.11773 6.13937 6.19403 6.29595 6.41304 6.46676 6.53465 6.64152 6.72402 6.84188 6.90754 7.02615 7.25438 7.52293 7.60852 8.31692 9.43290 9.99962 10.35947 11.35672 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.008054 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.126746 B = 3475.822590 C = 4467.626382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.075 4.075 6 C -0.117 4.117 7 C 0.074 3.926 8 F -0.151 7.151 9 C -0.167 4.167 10 C -0.110 4.110 11 C -0.100 4.100 12 C -0.056 4.056 13 C 0.215 3.785 14 H 0.063 0.937 15 N -0.714 5.714 16 C -0.244 4.244 17 H 0.074 0.926 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.386 0.614 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 -4.846 -9.959 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.112 4.112 6 C -0.119 4.119 7 C 0.055 3.945 8 F -0.130 7.130 9 C -0.186 4.186 10 C -0.128 4.128 11 C -0.118 4.118 12 C -0.060 4.060 13 C 0.105 3.895 14 H 0.081 0.919 15 N -0.354 5.354 16 C -0.375 4.375 17 H 0.092 0.908 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.170 0.830 34 H 0.221 0.779 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.488 -4.940 -9.828 11.880 hybrid contribution 0.315 0.013 0.860 0.916 sum 4.803 -4.927 -8.968 11.303 Atomic orbital electron populations 1.21716 0.94673 1.01500 1.01569 1.21335 0.96087 0.99761 0.94198 0.91135 1.21589 0.94208 1.00898 0.98038 1.20326 0.95597 1.01536 0.93695 1.19677 0.91395 1.04313 0.96475 1.17708 0.90029 1.05418 0.81315 1.91405 1.80058 1.94253 1.47258 1.20898 1.00012 1.05538 0.92158 1.20971 0.94826 1.00223 0.96777 1.21874 0.93743 0.96034 1.00194 1.21018 0.99493 0.94660 0.90807 1.19164 0.87394 0.95449 0.87499 0.91890 1.42457 1.83515 1.06721 1.02702 1.19230 1.40878 0.92019 0.85368 0.90840 1.24750 1.02282 0.95480 0.97935 1.69670 1.54506 1.04215 1.28826 0.86195 0.77442 0.78551 0.84480 1.20406 1.21813 1.21786 0.93214 0.91276 0.93778 0.91674 0.91718 0.91306 0.91010 0.85937 0.85887 0.82995 0.77935 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.10 37.16 0.34 -1.79 16 2 C -0.09 -1.54 2.25 -90.59 -0.20 -1.74 16 3 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 4 C -0.11 -1.50 5.28 -26.70 -0.14 -1.64 16 5 C -0.07 -1.08 5.34 -28.05 -0.15 -1.23 16 6 C -0.12 -2.01 5.74 -104.55 -0.60 -2.61 16 7 C 0.07 1.26 7.21 -39.28 -0.28 0.97 16 8 F -0.15 -2.46 16.47 2.25 0.04 -2.42 16 9 C -0.17 -2.67 10.02 -39.61 -0.40 -3.07 16 10 C -0.11 -1.84 10.05 -39.69 -0.40 -2.24 16 11 C -0.10 -1.94 9.18 -39.43 -0.36 -2.30 16 12 C -0.06 -1.06 5.55 -104.62 -0.58 -1.64 16 13 C 0.22 4.15 2.23 -69.25 -0.15 3.99 16 14 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 15 N -0.71 -16.67 4.50 -54.72 -0.25 -16.92 16 16 C -0.24 -6.23 7.71 -15.06 -0.12 -6.35 16 17 H 0.07 1.83 7.43 -52.49 -0.39 1.44 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -26.65 13.06 55.49 0.72 -25.93 16 20 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.25 7.90 -51.93 -0.41 0.84 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.15 3.24 5.26 -52.48 -0.28 2.97 16 34 H 0.39 9.79 7.80 -40.82 -0.32 9.47 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 287.52 15.07 4.33 4.33 Total: -1.00 -27.53 287.52 -8.05 -35.58 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.73 Total: 8.97 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.15 Total: -19.95 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.48 Total: -42.84 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.53 -8.05 -35.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.932 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds