Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.70869 * 2 1 4 4 C 1.53320 * 109.68120 * 239.46236 * 2 1 3 5 5 C 1.52736 * 108.38438 * 170.42123 * 4 2 1 6 6 C 1.50627 * 110.59376 * 51.08189 * 5 4 2 7 7 C 1.39128 * 117.76087 * 162.30224 * 6 5 4 8 8 F 1.35098 * 119.75481 * 359.77175 * 7 6 5 9 9 C 1.38161 * 120.49335 * 179.79262 * 7 6 5 10 10 C 1.38227 * 119.74103 * 359.94143 * 9 7 6 11 11 C 1.37939 * 119.80069 * 0.10557 * 10 9 7 12 12 C 1.37629 * 122.57218 * 342.23549 * 6 5 4 13 13 C 1.50639 * 122.55786 * 0.72894 * 12 6 5 14 14 H 1.08996 * 109.25048 * 102.49892 * 13 12 6 15 15 N 1.46506 * 109.24825 * 221.92079 * 13 12 6 16 16 C 1.36939 * 120.00066 * 274.99902 * 15 13 12 17 17 H 1.08001 * 119.99788 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99885 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00024 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47356 * 119.99940 * 20 18 16 23 23 H 1.48496 * 109.47464 * 240.00214 * 20 18 16 24 24 H 1.09000 * 109.47099 * 180.53717 * 1 2 3 25 25 H 1.09001 * 109.46676 * 300.54072 * 1 2 3 26 26 H 1.09001 * 109.46822 * 60.53643 * 1 2 3 27 27 H 1.09004 * 109.68186 * 50.69420 * 4 2 1 28 28 H 1.09005 * 109.68149 * 290.14589 * 4 2 1 29 29 H 1.08999 * 109.25053 * 171.36698 * 5 4 2 30 30 H 1.08998 * 109.25104 * 290.79004 * 5 4 2 31 31 H 1.07992 * 120.13017 * 179.97438 * 9 7 6 32 32 H 1.08004 * 120.09867 * 180.09037 * 10 9 7 33 33 H 1.08005 * 119.70325 * 180.02562 * 11 10 9 34 34 H 0.96994 * 120.00197 * 95.00087 * 15 13 12 35 35 H 0.97007 * 120.00148 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0464 -0.7335 -1.2434 5 6 3.5544 -0.5117 -1.3420 6 6 4.2256 -0.8459 -0.0357 7 6 5.5997 -1.0637 -0.0502 8 9 6.2802 -0.9759 -1.2140 9 6 6.2734 -1.3697 1.1165 10 6 5.5771 -1.4588 2.3073 11 6 4.2146 -1.2439 2.3224 12 6 3.5337 -0.9392 1.1503 13 6 2.0444 -0.7305 1.2386 14 1 1.5499 -1.6988 1.3161 15 7 1.7378 0.0644 2.4304 16 6 1.5940 -0.5508 3.6454 17 1 1.7070 -1.6219 3.7250 18 6 1.3030 0.2023 4.7745 19 7 1.1648 1.5076 4.6773 20 14 1.1075 -0.6367 6.4320 21 1 1.3094 -2.0993 6.2733 22 1 2.1141 -0.0978 7.3815 23 1 -0.2570 -0.3803 6.9588 24 1 -0.3633 -1.0276 0.0096 25 1 -0.3633 0.5222 0.8851 26 1 -0.3633 0.5055 -0.8948 27 1 1.5579 -0.3364 -2.1332 28 1 1.8372 -1.7996 -1.1541 29 1 3.9606 -1.1483 -2.1280 30 1 3.7487 0.5319 -1.5894 31 1 7.3400 -1.5381 1.0984 32 1 6.0982 -1.6961 3.2230 33 1 3.6721 -1.3134 3.2537 34 1 1.6367 1.0264 2.3590 35 1 0.9618 2.0339 5.4665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309461417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = -40.698156 kcal Electronic energy + Delta-G solvation = -18435.771242 eV Core-core repulsion = 15539.836123 eV Total energy + Delta-G solvation = -2895.935119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.82300 -40.95364 -37.76383 -35.97959 -33.51886 -32.43952 -30.84810 -29.59425 -27.36782 -25.50968 -23.84938 -22.72592 -22.50042 -20.47298 -19.09317 -18.17525 -17.32298 -16.78249 -16.57546 -16.48268 -15.75969 -15.48621 -15.10182 -14.64170 -14.56198 -14.35199 -13.82700 -13.73066 -13.38072 -12.93862 -12.93535 -12.75065 -12.56684 -12.43276 -12.22506 -12.00294 -11.85014 -11.57857 -11.36819 -11.14788 -10.87022 -9.56366 -9.42958 -9.01560 -7.91942 -5.19392 0.33099 0.37963 1.47637 1.49152 1.57636 2.55641 2.74600 3.30488 3.45110 3.68748 3.80070 3.89401 4.04319 4.12770 4.33542 4.35834 4.43051 4.57856 4.62146 4.70605 4.81755 4.91943 4.94877 5.07758 5.11190 5.18929 5.23448 5.31621 5.36370 5.48034 5.52250 5.57714 5.63994 5.85151 6.12916 6.29800 7.35946 8.09119 8.34757 9.31254 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.008054 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.126746 B = 3475.822590 C = 4467.626382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 H 0.058 0.942 4 C -0.100 4.100 5 C -0.075 4.075 6 C -0.119 4.119 7 C 0.068 3.932 8 F -0.145 7.145 9 C -0.159 4.159 10 C -0.109 4.109 11 C -0.126 4.126 12 C -0.074 4.074 13 C 0.214 3.786 14 H 0.055 0.945 15 N -0.723 5.723 16 C -0.226 4.226 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.965 5.965 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.297 1.297 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.373 0.627 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 -6.014 -11.742 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.112 4.112 6 C -0.120 4.120 7 C 0.049 3.951 8 F -0.123 7.123 9 C -0.178 4.178 10 C -0.127 4.127 11 C -0.144 4.144 12 C -0.077 4.077 13 C 0.105 3.895 14 H 0.073 0.927 15 N -0.361 5.361 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.263 4.263 19 N -0.616 5.616 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.225 1.225 23 H -0.224 1.224 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.206 0.794 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.561 -6.160 -11.650 14.303 hybrid contribution 0.075 0.314 1.307 1.346 sum 5.635 -5.846 -10.343 13.149 Atomic orbital electron populations 1.21652 0.94133 1.01759 1.01312 1.21292 0.96477 0.99033 0.94150 0.92314 1.21550 0.93806 1.00919 0.97480 1.20422 0.95885 1.02266 0.92597 1.19908 0.91865 1.03318 0.96958 1.17838 0.90071 1.05307 0.81856 1.91423 1.79829 1.94181 1.46908 1.21219 1.01480 1.03791 0.91290 1.21175 0.93802 0.99426 0.98260 1.21771 0.95133 0.98123 0.99399 1.20844 0.98939 0.96310 0.91638 1.19317 0.88056 0.94812 0.87302 0.92695 1.42575 1.83703 1.06320 1.03485 1.19509 1.37921 0.92132 0.86180 0.90492 1.25427 1.03760 0.96031 1.01036 1.69815 1.57208 1.05520 1.29058 0.85243 0.76554 0.78328 0.80724 1.18901 1.22454 1.22445 0.92590 0.94605 0.90993 0.88700 0.91212 0.89485 0.90367 0.82903 0.83651 0.85742 0.79436 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.10 71.98 0.65 -3.29 16 2 C -0.09 -2.85 2.25 -10.78 -0.02 -2.87 16 3 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 4 C -0.10 -2.43 5.28 30.61 0.16 -2.27 16 5 C -0.07 -1.95 5.34 29.74 0.16 -1.79 16 6 C -0.12 -3.87 5.74 -19.82 -0.11 -3.98 16 7 C 0.07 2.13 7.21 22.47 0.16 2.29 16 8 F -0.14 -4.24 16.47 44.97 0.74 -3.50 16 9 C -0.16 -4.64 10.02 22.25 0.22 -4.42 16 10 C -0.11 -3.47 10.05 22.20 0.22 -3.25 16 11 C -0.13 -4.87 9.18 22.36 0.21 -4.66 16 12 C -0.07 -2.77 5.55 -19.86 -0.11 -2.88 16 13 C 0.21 8.28 2.23 44.13 0.10 8.38 16 14 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 15 N -0.72 -34.70 4.50 -327.04 -1.47 -36.17 16 16 C -0.23 -11.80 7.71 84.03 0.65 -11.15 16 17 H 0.08 3.89 7.43 -2.91 -0.02 3.87 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.97 -57.60 13.06 21.65 0.28 -57.31 16 20 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.03 1.30 7.90 -2.39 -0.02 1.28 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.81 8.13 -2.38 -0.02 1.79 16 28 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 29 H 0.09 1.98 7.85 -2.39 -0.02 1.96 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.12 5.46 5.26 -2.91 -0.02 5.45 16 34 H 0.37 19.70 7.80 -92.71 -0.72 18.98 16 35 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -60.10 287.52 4.70 -55.40 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.37 Total: 27.95 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 2.75 Total: -33.30 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -1.19 Total: -93.49 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.74 Total: -3.50 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -60.10 4.70 -55.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.697 kcal (2) G-P(sol) polarization free energy of solvation -60.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds