Wall clock time and date at job start Mon Mar 30 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.68191 * 2 1 4 4 C 1.53331 * 109.68905 * 120.52577 * 2 1 3 5 5 C 1.52731 * 108.38639 * 189.61783 * 4 2 1 6 6 C 1.50626 * 110.59760 * 308.98745 * 5 4 2 7 7 C 1.39134 * 117.75227 * 197.47958 * 6 5 4 8 8 F 1.35104 * 119.75563 * 0.20776 * 7 6 5 9 9 C 1.38163 * 120.49318 * 180.20544 * 7 6 5 10 10 C 1.38228 * 119.74074 * 0.05040 * 9 7 6 11 11 C 1.37939 * 119.79937 * 359.87823 * 10 9 7 12 12 C 1.37628 * 122.58421 * 17.53607 * 6 5 4 13 13 C 1.50632 * 122.56497 * 359.55017 * 12 6 5 14 14 H 1.09000 * 109.25744 * 257.36883 * 13 12 6 15 15 N 1.46498 * 109.25785 * 137.92842 * 13 12 6 16 16 C 1.36938 * 119.99591 * 83.91053 * 15 13 12 17 17 H 1.08001 * 120.00255 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00239 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00559 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47020 * 59.99909 * 20 18 16 22 22 H 1.48497 * 109.47548 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47209 * 300.00311 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.47146 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.47337 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.47318 * 1 2 3 27 27 H 1.09002 * 109.67988 * 309.34633 * 4 2 1 28 28 H 1.09010 * 109.67576 * 69.85704 * 4 2 1 29 29 H 1.08995 * 109.24982 * 69.27704 * 5 4 2 30 30 H 1.09004 * 109.25049 * 188.74262 * 5 4 2 31 31 H 1.07997 * 120.12918 * 180.02562 * 9 7 6 32 32 H 1.07998 * 120.09924 * 179.89808 * 10 9 7 33 33 H 1.08002 * 119.69640 * 179.97438 * 11 10 9 34 34 H 0.96996 * 120.00490 * 263.91319 * 15 13 12 35 35 H 0.96998 * 120.00293 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0466 -0.7333 1.2436 5 6 3.5543 -0.5105 1.3426 6 6 4.2259 -0.8427 0.0359 7 6 5.6009 -1.0550 0.0498 8 9 6.2818 -0.9634 1.2131 9 6 6.2752 -1.3588 -1.1172 10 6 5.5785 -1.4515 -2.3075 11 6 4.2151 -1.2426 -2.3218 12 6 3.5337 -0.9395 -1.1497 13 6 2.0445 -0.7312 -1.2384 14 1 1.5500 -1.6995 -1.3153 15 7 1.7379 0.0631 -2.4306 16 6 1.6165 -0.5500 -3.6490 17 1 1.7472 -1.6189 -3.7312 18 6 1.3265 0.2026 -4.7788 19 7 1.1677 1.5054 -4.6789 20 14 1.1601 -0.6337 -6.4408 21 1 0.0634 -1.6333 -6.3844 22 1 0.8497 0.3830 -7.4777 23 1 2.4345 -1.3158 -6.7815 24 1 -0.3633 0.5056 0.8947 25 1 -0.3633 -1.0276 -0.0094 26 1 -0.3634 0.5220 -0.8852 27 1 1.5576 -0.3365 2.1333 28 1 1.8374 -1.7994 1.1544 29 1 3.7478 0.5329 1.5912 30 1 3.9611 -1.1484 2.1274 31 1 7.3425 -1.5229 -1.0996 32 1 6.1000 -1.6871 -3.2234 33 1 3.6725 -1.3150 -3.2528 34 1 1.6209 1.0231 -2.3569 35 1 0.9647 2.0313 -5.4682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309461418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:35 Heat of formation + Delta-G solvation = -26.268204 kcal Electronic energy + Delta-G solvation = -18439.213692 eV Core-core repulsion = 15543.904303 eV Total energy + Delta-G solvation = -2895.309389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.51962 -39.57210 -36.38171 -34.30802 -31.86558 -30.99359 -29.26973 -28.21615 -25.85059 -23.84407 -22.37353 -21.40948 -21.05800 -19.11230 -17.19394 -16.82164 -15.97202 -15.40229 -15.14225 -14.89855 -14.23013 -13.83101 -13.57651 -13.29115 -13.20972 -12.94180 -12.41903 -12.32433 -11.99403 -11.50827 -11.41506 -11.08963 -10.98517 -10.92850 -10.85507 -10.31097 -10.23316 -10.16903 -9.90894 -9.55610 -8.99147 -8.20818 -8.02803 -7.07520 -5.85730 -3.14451 1.71036 1.74554 3.37958 3.43335 3.44244 4.12075 4.51670 4.67592 4.93799 5.05585 5.17069 5.34617 5.40687 5.47941 5.62680 5.71613 5.79644 5.86493 5.97758 6.06328 6.12022 6.14016 6.19500 6.29642 6.41620 6.46707 6.53841 6.64493 6.72914 6.84080 6.91089 7.03294 7.25960 7.52746 7.59958 8.32160 9.43449 10.00220 10.36243 11.35940 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.008085 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.526929 B = 3462.409893 C = 4460.041976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.074 4.074 6 C -0.117 4.117 7 C 0.074 3.926 8 F -0.151 7.151 9 C -0.167 4.167 10 C -0.110 4.110 11 C -0.101 4.101 12 C -0.056 4.056 13 C 0.216 3.784 14 H 0.063 0.937 15 N -0.714 5.714 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.386 0.614 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -4.779 9.908 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.111 4.111 6 C -0.119 4.119 7 C 0.055 3.945 8 F -0.130 7.130 9 C -0.186 4.186 10 C -0.128 4.128 11 C -0.119 4.119 12 C -0.060 4.060 13 C 0.105 3.895 14 H 0.080 0.920 15 N -0.354 5.354 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.734 3.266 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.211 1.211 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.171 0.829 34 H 0.221 0.779 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.437 -4.855 9.770 11.777 hybrid contribution 0.334 -0.009 -0.856 0.919 sum 4.771 -4.865 8.913 11.219 Atomic orbital electron populations 1.21717 0.94677 1.01510 1.01568 1.21333 0.96077 0.99757 0.94193 0.91126 1.21588 0.94216 1.00900 0.98026 1.20325 0.95586 1.01534 0.93699 1.19677 0.91373 1.04335 0.96479 1.17711 0.90010 1.05446 0.81326 1.91407 1.80045 1.94229 1.47303 1.20899 0.99997 1.05551 0.92162 1.20972 0.94833 1.00223 0.96771 1.21903 0.93749 0.96017 1.00221 1.21013 0.99498 0.94666 0.90810 1.19163 0.87401 0.95433 0.87487 0.91976 1.42441 1.83522 1.07051 1.02368 1.19136 1.41185 0.92152 0.85167 0.90937 1.24753 1.02225 0.95501 0.97911 1.69652 1.54181 1.04389 1.29031 0.86331 0.78003 0.78228 0.84015 1.21159 1.21663 1.21122 0.93766 0.93206 0.91287 0.91676 0.91713 0.91009 0.91305 0.85946 0.85903 0.82928 0.77922 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.10 37.16 0.34 -1.79 16 2 C -0.09 -1.54 2.24 -90.58 -0.20 -1.74 16 3 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 4 C -0.11 -1.50 5.28 -26.70 -0.14 -1.64 16 5 C -0.07 -1.08 5.34 -28.06 -0.15 -1.23 16 6 C -0.12 -2.02 5.74 -104.55 -0.60 -2.62 16 7 C 0.07 1.26 7.22 -39.28 -0.28 0.97 16 8 F -0.15 -2.46 16.47 2.25 0.04 -2.43 16 9 C -0.17 -2.68 10.02 -39.61 -0.40 -3.08 16 10 C -0.11 -1.85 10.05 -39.69 -0.40 -2.25 16 11 C -0.10 -1.96 9.17 -39.44 -0.36 -2.32 16 12 C -0.06 -1.07 5.55 -104.62 -0.58 -1.65 16 13 C 0.22 4.16 2.24 -69.25 -0.15 4.00 16 14 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 15 N -0.71 -16.69 4.52 -54.71 -0.25 -16.94 16 16 C -0.25 -6.28 7.69 -15.06 -0.12 -6.39 16 17 H 0.07 1.79 7.35 -52.49 -0.39 1.41 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 20 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.06 0.87 8.10 -51.92 -0.42 0.45 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.15 3.28 5.16 -52.49 -0.27 3.00 16 34 H 0.39 9.80 7.79 -40.82 -0.32 9.48 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -27.48 287.35 -8.05 -35.53 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.72 Total: 9.14 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -3.14 Total: -20.01 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.48 Total: -42.88 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.48 -8.05 -35.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.260 kcal (2) G-P(sol) polarization free energy of solvation -27.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds