Wall clock time and date at job start Mon Mar 30 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.68191 * 2 1 4 4 C 1.53331 * 109.68905 * 120.52577 * 2 1 3 5 5 C 1.52731 * 108.38639 * 189.61783 * 4 2 1 6 6 C 1.50626 * 110.59760 * 308.98745 * 5 4 2 7 7 C 1.39134 * 117.75227 * 197.47958 * 6 5 4 8 8 F 1.35104 * 119.75563 * 0.20776 * 7 6 5 9 9 C 1.38163 * 120.49318 * 180.20544 * 7 6 5 10 10 C 1.38228 * 119.74074 * 0.05040 * 9 7 6 11 11 C 1.37939 * 119.79937 * 359.87823 * 10 9 7 12 12 C 1.37628 * 122.58421 * 17.53607 * 6 5 4 13 13 C 1.50632 * 122.56497 * 359.55017 * 12 6 5 14 14 H 1.09000 * 109.25744 * 257.36883 * 13 12 6 15 15 N 1.46498 * 109.25785 * 137.92842 * 13 12 6 16 16 C 1.36938 * 119.99591 * 83.91053 * 15 13 12 17 17 H 1.08001 * 120.00255 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00239 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00559 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47020 * 59.99909 * 20 18 16 22 22 H 1.48497 * 109.47548 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47209 * 300.00311 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.47146 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.47337 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.47318 * 1 2 3 27 27 H 1.09002 * 109.67988 * 309.34633 * 4 2 1 28 28 H 1.09010 * 109.67576 * 69.85704 * 4 2 1 29 29 H 1.08995 * 109.24982 * 69.27704 * 5 4 2 30 30 H 1.09004 * 109.25049 * 188.74262 * 5 4 2 31 31 H 1.07997 * 120.12918 * 180.02562 * 9 7 6 32 32 H 1.07998 * 120.09924 * 179.89808 * 10 9 7 33 33 H 1.08002 * 119.69640 * 179.97438 * 11 10 9 34 34 H 0.96996 * 120.00490 * 263.91319 * 15 13 12 35 35 H 0.96998 * 120.00293 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0466 -0.7333 1.2436 5 6 3.5543 -0.5105 1.3426 6 6 4.2259 -0.8427 0.0359 7 6 5.6009 -1.0550 0.0498 8 9 6.2818 -0.9634 1.2131 9 6 6.2752 -1.3588 -1.1172 10 6 5.5785 -1.4515 -2.3075 11 6 4.2151 -1.2426 -2.3218 12 6 3.5337 -0.9395 -1.1497 13 6 2.0445 -0.7312 -1.2384 14 1 1.5500 -1.6995 -1.3153 15 7 1.7379 0.0631 -2.4306 16 6 1.6165 -0.5500 -3.6490 17 1 1.7472 -1.6189 -3.7312 18 6 1.3265 0.2026 -4.7788 19 7 1.1677 1.5054 -4.6789 20 14 1.1601 -0.6337 -6.4408 21 1 0.0634 -1.6333 -6.3844 22 1 0.8497 0.3830 -7.4777 23 1 2.4345 -1.3158 -6.7815 24 1 -0.3633 0.5056 0.8947 25 1 -0.3633 -1.0276 -0.0094 26 1 -0.3634 0.5220 -0.8852 27 1 1.5576 -0.3365 2.1333 28 1 1.8374 -1.7994 1.1544 29 1 3.7478 0.5329 1.5912 30 1 3.9611 -1.1484 2.1274 31 1 7.3425 -1.5229 -1.0996 32 1 6.1000 -1.6871 -3.2234 33 1 3.6725 -1.3150 -3.2528 34 1 1.6209 1.0231 -2.3569 35 1 0.9647 2.0313 -5.4682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309461418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:34 Heat of formation + Delta-G solvation = -40.283435 kcal Electronic energy + Delta-G solvation = -18439.821438 eV Core-core repulsion = 15543.904303 eV Total energy + Delta-G solvation = -2895.917135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.82181 -40.95534 -37.76159 -35.98202 -33.51671 -32.44082 -30.84277 -29.59647 -27.37018 -25.50924 -23.84361 -22.72710 -22.50410 -20.46757 -19.09567 -18.17412 -17.32273 -16.77853 -16.58090 -16.47684 -15.76216 -15.48013 -15.10172 -14.64394 -14.56122 -14.34778 -13.82952 -13.73398 -13.38142 -12.93852 -12.90544 -12.70917 -12.57505 -12.44603 -12.25145 -12.06960 -11.83591 -11.57598 -11.35493 -11.14148 -10.85364 -9.56288 -9.42928 -9.01478 -7.91516 -5.19043 0.33086 0.37927 1.48934 1.50060 1.55925 2.56057 2.74536 3.30446 3.45051 3.68669 3.80055 3.89409 4.04252 4.12767 4.33426 4.36021 4.42955 4.57833 4.62113 4.70547 4.81601 4.91854 4.94924 5.07724 5.11114 5.18901 5.23367 5.31684 5.36328 5.47607 5.51958 5.57555 5.64061 5.85168 6.12943 6.29934 7.36068 8.09414 8.35122 9.31299 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.008085 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.526929 B = 3462.409893 C = 4460.041976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 H 0.059 0.941 4 C -0.100 4.100 5 C -0.075 4.075 6 C -0.119 4.119 7 C 0.068 3.932 8 F -0.145 7.145 9 C -0.159 4.159 10 C -0.109 4.109 11 C -0.126 4.126 12 C -0.074 4.074 13 C 0.214 3.786 14 H 0.054 0.946 15 N -0.723 5.723 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.962 3.038 21 H -0.280 1.280 22 H -0.300 1.300 23 H -0.277 1.277 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.374 0.626 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -5.917 11.675 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.112 4.112 6 C -0.120 4.120 7 C 0.049 3.951 8 F -0.123 7.123 9 C -0.178 4.178 10 C -0.127 4.127 11 C -0.145 4.145 12 C -0.077 4.077 13 C 0.105 3.895 14 H 0.072 0.928 15 N -0.361 5.361 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.792 3.208 21 H -0.206 1.206 22 H -0.226 1.226 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.206 0.794 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.521 -6.044 11.574 14.176 hybrid contribution 0.089 0.279 -1.297 1.330 sum 5.610 -5.765 10.276 13.050 Atomic orbital electron populations 1.21653 0.94125 1.01764 1.01326 1.21292 0.96479 0.99027 0.94137 0.92302 1.21551 0.93808 1.00922 0.97473 1.20422 0.95879 1.02274 0.92584 1.19911 0.91843 1.03318 0.96970 1.17839 0.90054 1.05323 0.81864 1.91425 1.79813 1.94155 1.46943 1.21218 1.01470 1.03798 0.91288 1.21171 0.93815 0.99465 0.98247 1.21795 0.95130 0.98118 0.99434 1.20840 0.98952 0.96296 0.91630 1.19314 0.88050 0.94803 0.87305 0.92784 1.42561 1.83727 1.06653 1.03152 1.19433 1.38275 0.92306 0.86000 0.90524 1.25436 1.03657 0.96047 1.01052 1.69804 1.56904 1.05697 1.29187 0.85381 0.78176 0.77057 0.80214 1.20593 1.22634 1.20317 0.90967 0.92597 0.94599 0.88687 0.91210 0.90355 0.89475 0.82908 0.83720 0.85696 0.79421 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.10 71.98 0.65 -3.29 16 2 C -0.09 -2.85 2.24 -10.77 -0.02 -2.87 16 3 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 4 C -0.10 -2.44 5.28 30.62 0.16 -2.27 16 5 C -0.07 -1.95 5.34 29.74 0.16 -1.79 16 6 C -0.12 -3.87 5.74 -19.82 -0.11 -3.99 16 7 C 0.07 2.14 7.22 22.47 0.16 2.30 16 8 F -0.14 -4.24 16.47 44.97 0.74 -3.50 16 9 C -0.16 -4.66 10.02 22.25 0.22 -4.44 16 10 C -0.11 -3.51 10.05 22.20 0.22 -3.28 16 11 C -0.13 -4.92 9.17 22.36 0.21 -4.71 16 12 C -0.07 -2.78 5.55 -19.87 -0.11 -2.89 16 13 C 0.21 8.30 2.24 44.14 0.10 8.40 16 14 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 15 N -0.72 -34.78 4.52 -327.02 -1.48 -36.26 16 16 C -0.23 -11.97 7.69 84.03 0.65 -11.32 16 17 H 0.08 3.87 7.35 -2.91 -0.02 3.85 16 18 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 19 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 20 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.30 7.90 -2.38 -0.02 1.28 16 27 H 0.09 1.82 8.13 -2.39 -0.02 1.80 16 28 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.09 1.99 7.85 -2.38 -0.02 1.97 16 31 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.13 5.51 5.16 -2.91 -0.02 5.50 16 34 H 0.37 19.73 7.79 -92.71 -0.72 19.00 16 35 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -60.01 287.35 4.70 -55.31 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.37 Total: 28.42 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 2.75 Total: -33.53 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -1.20 Total: -93.60 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.74 Total: -3.50 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -60.01 4.70 -55.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.030 kcal (2) G-P(sol) polarization free energy of solvation -60.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds