Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.70621 * 2 1 4 4 C 1.53323 * 109.67158 * 120.51753 * 2 1 3 5 5 C 1.52738 * 108.38263 * 189.52389 * 4 2 1 6 6 C 1.50629 * 110.57553 * 308.79869 * 5 4 2 7 7 C 1.39130 * 117.75830 * 197.80588 * 6 5 4 8 8 F 1.35102 * 119.75311 * 0.59619 * 7 6 5 9 9 C 1.38159 * 120.48631 * 180.57341 * 7 6 5 10 10 C 1.38223 * 119.74252 * 0.02562 * 9 7 6 11 11 C 1.37948 * 119.80389 * 359.85394 * 10 9 7 12 12 C 1.37625 * 122.56573 * 18.12293 * 6 5 4 13 13 C 1.50629 * 122.55541 * 358.85555 * 12 6 5 14 14 H 1.08999 * 109.25082 * 138.27684 * 13 12 6 15 15 N 1.46497 * 109.25278 * 257.69759 * 13 12 6 16 16 C 1.36938 * 119.99882 * 274.99791 * 15 13 12 17 17 H 1.07994 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99816 * 179.97438 * 16 15 13 19 19 N 1.31623 * 120.00259 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47472 * 90.00099 * 20 18 16 22 22 H 1.48501 * 109.47168 * 209.99865 * 20 18 16 23 23 H 1.48499 * 109.47162 * 329.99916 * 20 18 16 24 24 H 1.08998 * 109.46790 * 299.48278 * 1 2 3 25 25 H 1.08997 * 109.46446 * 59.48054 * 1 2 3 26 26 H 1.08999 * 109.47048 * 179.48115 * 1 2 3 27 27 H 1.09005 * 109.68454 * 69.80524 * 4 2 1 28 28 H 1.08998 * 109.68814 * 309.24591 * 4 2 1 29 29 H 1.09001 * 109.25595 * 188.51547 * 5 4 2 30 30 H 1.08997 * 109.22470 * 69.06517 * 5 4 2 31 31 H 1.07999 * 120.12759 * 179.97438 * 9 7 6 32 32 H 1.08001 * 120.09666 * 179.83490 * 10 9 7 33 33 H 1.07995 * 119.69757 * 179.97438 * 11 10 9 34 34 H 0.96996 * 119.99829 * 94.99862 * 15 13 12 35 35 H 0.96997 * 120.00014 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0462 -0.7331 1.2437 5 6 3.5544 -0.5125 1.3417 6 6 4.2248 -0.8510 0.0361 7 6 5.5983 -1.0726 0.0512 8 9 6.2776 -0.9917 1.2162 9 6 6.2724 -1.3752 -1.1162 10 6 5.5770 -1.4579 -2.3079 11 6 4.2148 -1.2408 -2.3233 12 6 3.5334 -0.9398 -1.1506 13 6 2.0443 -0.7305 -1.2387 14 1 1.8164 -0.1387 -2.1252 15 7 1.3790 -2.0314 -1.3433 16 6 1.2372 -2.6316 -2.5659 17 1 1.6163 -2.1461 -3.4530 18 6 0.6073 -3.8646 -2.6649 19 7 0.1457 -4.4566 -1.5837 20 14 0.4145 -4.6837 -4.3326 21 1 1.5948 -5.5439 -4.6011 22 1 -0.8154 -5.5158 -4.3362 23 1 0.3109 -3.6426 -5.3864 24 1 -0.3633 0.5058 0.8946 25 1 -0.3632 0.5219 -0.8853 26 1 -0.3633 -1.0276 -0.0093 27 1 1.8361 -1.7991 1.1552 28 1 1.5584 -0.3350 2.1335 29 1 3.9601 -1.1474 2.1294 30 1 3.7492 0.5318 1.5858 31 1 7.3387 -1.5457 -1.0978 32 1 6.0986 -1.6915 -3.2242 33 1 3.6732 -1.3054 -3.2554 34 1 1.0389 -2.4676 -0.5465 35 1 -0.2941 -5.3183 -1.6529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309461420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = -25.291322 kcal Electronic energy + Delta-G solvation = -18542.723074 eV Core-core repulsion = 15647.456045 eV Total energy + Delta-G solvation = -2895.267028 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.52235 -39.60640 -36.52501 -33.93210 -31.88482 -30.94381 -29.41420 -28.24646 -25.78393 -23.62370 -22.69542 -21.46719 -21.34962 -18.45529 -17.39115 -16.82481 -15.85733 -15.48485 -15.26533 -14.67671 -14.38930 -13.77662 -13.55521 -13.34547 -13.26874 -12.98068 -12.55356 -12.30065 -11.63706 -11.59170 -11.36454 -11.11690 -11.05056 -10.89281 -10.81598 -10.39508 -10.16214 -10.04362 -9.72712 -9.60705 -8.99247 -8.25794 -8.09409 -7.04352 -5.83570 -3.10938 1.66453 1.72427 3.39623 3.44786 3.46457 4.06806 4.55363 4.67183 4.97319 5.06507 5.28745 5.33746 5.44397 5.51889 5.64321 5.71702 5.74631 5.85034 5.95698 6.07188 6.14364 6.20383 6.26728 6.33011 6.43799 6.54423 6.56709 6.60152 6.70144 6.76423 6.92592 7.05280 7.18887 7.43298 7.64058 8.34182 9.46185 10.00665 10.36579 11.38440 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.008458 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.464502 B = 3309.671110 C = 4133.016144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.074 4.074 6 C -0.110 4.110 7 C 0.081 3.919 8 F -0.149 7.149 9 C -0.170 4.170 10 C -0.104 4.104 11 C -0.106 4.106 12 C -0.046 4.046 13 C 0.212 3.788 14 H 0.061 0.939 15 N -0.706 5.706 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.928 5.928 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.387 0.613 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 9.051 3.073 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.111 4.111 6 C -0.112 4.112 7 C 0.062 3.938 8 F -0.128 7.128 9 C -0.189 4.189 10 C -0.122 4.122 11 C -0.125 4.125 12 C -0.050 4.050 13 C 0.102 3.898 14 H 0.079 0.921 15 N -0.346 5.346 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.223 0.777 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.907 8.973 2.938 11.698 hybrid contribution 0.199 -0.938 -0.516 1.089 sum 7.106 8.034 2.422 10.996 Atomic orbital electron populations 1.21704 0.94457 1.03250 1.00049 1.21369 0.96362 0.98469 0.95226 0.91582 1.21601 0.93821 1.02001 0.97649 1.20325 0.95929 1.01099 0.93702 1.19614 0.91231 1.03793 0.96531 1.17744 0.90111 1.04681 0.81268 1.91413 1.80082 1.94190 1.47141 1.20844 1.00125 1.05876 0.92053 1.20853 0.94594 0.99757 0.96968 1.21260 0.93572 0.98804 0.98901 1.20818 0.98411 0.94859 0.90912 1.19179 0.85422 0.89121 0.96121 0.92131 1.42556 1.65718 1.18631 1.07676 1.19225 1.31197 1.00582 0.86050 0.91061 1.24738 1.01214 0.97604 0.97012 1.69654 1.43818 1.17318 1.26773 0.86226 0.77229 0.79414 0.83544 1.21725 1.21767 1.20677 0.94023 0.93076 0.90934 0.90753 0.91950 0.91253 0.91169 0.85833 0.85903 0.85597 0.77716 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.95 37.16 0.33 -1.89 16 2 C -0.10 -1.55 2.53 -90.59 -0.23 -1.78 16 3 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 4 C -0.11 -1.79 5.24 -26.70 -0.14 -1.93 16 5 C -0.07 -1.14 5.35 -28.05 -0.15 -1.29 16 6 C -0.11 -1.95 5.74 -104.55 -0.60 -2.55 16 7 C 0.08 1.39 7.22 -39.28 -0.28 1.11 16 8 F -0.15 -2.49 16.46 2.25 0.04 -2.46 16 9 C -0.17 -2.68 10.02 -39.62 -0.40 -3.08 16 10 C -0.10 -1.65 10.05 -39.69 -0.40 -2.05 16 11 C -0.11 -1.93 9.22 -39.43 -0.36 -2.29 16 12 C -0.05 -0.86 5.30 -104.63 -0.55 -1.42 16 13 C 0.21 4.08 2.30 -69.26 -0.16 3.92 16 14 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 15 N -0.71 -16.60 4.18 -54.73 -0.23 -16.83 16 16 C -0.24 -6.25 9.46 -15.06 -0.14 -6.40 16 17 H 0.07 1.79 7.21 -52.49 -0.38 1.42 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 19 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 20 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.38 6.87 -51.93 -0.36 1.02 16 27 H 0.07 1.37 6.76 -51.93 -0.35 1.02 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 2.28 7.35 -52.49 -0.39 1.89 16 34 H 0.39 9.77 5.74 -40.82 -0.23 9.53 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -28.39 286.33 -7.98 -36.37 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.62 Total: 8.22 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.18 Total: -19.99 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.50 Total: -43.23 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.39 -7.98 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.078 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds