Wall clock time and date at job start Mon Mar 30 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.70621 * 2 1 4 4 C 1.53323 * 109.67158 * 120.51753 * 2 1 3 5 5 C 1.52738 * 108.38263 * 189.52389 * 4 2 1 6 6 C 1.50629 * 110.57553 * 308.79869 * 5 4 2 7 7 C 1.39130 * 117.75830 * 197.80588 * 6 5 4 8 8 F 1.35102 * 119.75311 * 0.59619 * 7 6 5 9 9 C 1.38159 * 120.48631 * 180.57341 * 7 6 5 10 10 C 1.38223 * 119.74252 * 0.02562 * 9 7 6 11 11 C 1.37948 * 119.80389 * 359.85394 * 10 9 7 12 12 C 1.37625 * 122.56573 * 18.12293 * 6 5 4 13 13 C 1.50629 * 122.55541 * 358.85555 * 12 6 5 14 14 H 1.08999 * 109.25082 * 138.27684 * 13 12 6 15 15 N 1.46497 * 109.25278 * 257.69759 * 13 12 6 16 16 C 1.36938 * 119.99882 * 274.99791 * 15 13 12 17 17 H 1.07994 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99816 * 179.97438 * 16 15 13 19 19 N 1.31623 * 120.00259 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47472 * 90.00099 * 20 18 16 22 22 H 1.48501 * 109.47168 * 209.99865 * 20 18 16 23 23 H 1.48499 * 109.47162 * 329.99916 * 20 18 16 24 24 H 1.08998 * 109.46790 * 299.48278 * 1 2 3 25 25 H 1.08997 * 109.46446 * 59.48054 * 1 2 3 26 26 H 1.08999 * 109.47048 * 179.48115 * 1 2 3 27 27 H 1.09005 * 109.68454 * 69.80524 * 4 2 1 28 28 H 1.08998 * 109.68814 * 309.24591 * 4 2 1 29 29 H 1.09001 * 109.25595 * 188.51547 * 5 4 2 30 30 H 1.08997 * 109.22470 * 69.06517 * 5 4 2 31 31 H 1.07999 * 120.12759 * 179.97438 * 9 7 6 32 32 H 1.08001 * 120.09666 * 179.83490 * 10 9 7 33 33 H 1.07995 * 119.69757 * 179.97438 * 11 10 9 34 34 H 0.96996 * 119.99829 * 94.99862 * 15 13 12 35 35 H 0.96997 * 120.00014 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0462 -0.7331 1.2437 5 6 3.5544 -0.5125 1.3417 6 6 4.2248 -0.8510 0.0361 7 6 5.5983 -1.0726 0.0512 8 9 6.2776 -0.9917 1.2162 9 6 6.2724 -1.3752 -1.1162 10 6 5.5770 -1.4579 -2.3079 11 6 4.2148 -1.2408 -2.3233 12 6 3.5334 -0.9398 -1.1506 13 6 2.0443 -0.7305 -1.2387 14 1 1.8164 -0.1387 -2.1252 15 7 1.3790 -2.0314 -1.3433 16 6 1.2372 -2.6316 -2.5659 17 1 1.6163 -2.1461 -3.4530 18 6 0.6073 -3.8646 -2.6649 19 7 0.1457 -4.4566 -1.5837 20 14 0.4145 -4.6837 -4.3326 21 1 1.5948 -5.5439 -4.6011 22 1 -0.8154 -5.5158 -4.3362 23 1 0.3109 -3.6426 -5.3864 24 1 -0.3633 0.5058 0.8946 25 1 -0.3632 0.5219 -0.8853 26 1 -0.3633 -1.0276 -0.0093 27 1 1.8361 -1.7991 1.1552 28 1 1.5584 -0.3350 2.1335 29 1 3.9601 -1.1474 2.1294 30 1 3.7492 0.5318 1.5858 31 1 7.3387 -1.5457 -1.0978 32 1 6.0986 -1.6915 -3.2242 33 1 3.6732 -1.3054 -3.2554 34 1 1.0389 -2.4676 -0.5465 35 1 -0.2941 -5.3183 -1.6529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309461420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:38 Heat of formation + Delta-G solvation = -39.748127 kcal Electronic energy + Delta-G solvation = -18543.349968 eV Core-core repulsion = 15647.456045 eV Total energy + Delta-G solvation = -2895.893922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.83059 -40.98292 -37.91084 -35.63765 -33.51355 -32.36811 -31.02442 -29.63143 -27.30894 -25.37958 -24.14138 -22.84637 -22.66205 -19.86366 -19.28025 -18.17477 -17.24573 -16.82448 -16.59980 -16.46497 -15.89206 -15.36047 -15.13891 -14.75631 -14.58779 -14.38349 -14.05674 -13.63199 -13.10799 -13.01693 -12.82678 -12.76308 -12.67067 -12.44239 -12.22694 -12.04756 -11.98317 -11.44515 -11.33110 -11.06787 -10.87849 -9.62085 -9.43788 -8.97969 -7.90854 -5.17239 0.31424 0.39693 1.48114 1.48596 1.56432 2.56177 2.74291 3.33687 3.45964 3.69046 3.80174 3.97952 4.06550 4.10226 4.25033 4.33445 4.43102 4.47403 4.63420 4.75876 4.83116 4.89776 4.91021 5.04255 5.13719 5.22864 5.23605 5.25200 5.37292 5.40839 5.53650 5.58638 5.69264 5.81634 6.10416 6.30474 7.37947 8.11287 8.36506 9.32344 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.008458 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.464502 B = 3309.671110 C = 4133.016144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 H 0.091 0.909 4 C -0.107 4.107 5 C -0.072 4.072 6 C -0.119 4.119 7 C 0.069 3.931 8 F -0.147 7.147 9 C -0.162 4.162 10 C -0.101 4.101 11 C -0.125 4.125 12 C -0.066 4.066 13 C 0.209 3.791 14 H 0.055 0.945 15 N -0.716 5.716 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.964 3.036 21 H -0.292 1.292 22 H -0.300 1.300 23 H -0.267 1.267 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.118 0.882 34 H 0.376 0.624 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 10.490 3.052 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.049 3.951 8 F -0.126 7.126 9 C -0.181 4.181 10 C -0.119 4.119 11 C -0.144 4.144 12 C -0.069 4.069 13 C 0.100 3.900 14 H 0.073 0.927 15 N -0.355 5.355 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.794 3.206 21 H -0.220 1.220 22 H -0.227 1.227 23 H -0.192 1.192 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.136 0.864 34 H 0.210 0.790 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.506 10.469 2.902 13.797 hybrid contribution -0.170 -1.261 -0.487 1.363 sum 8.336 9.207 2.415 12.653 Atomic orbital electron populations 1.21633 0.94509 1.01300 1.01415 1.21361 0.96227 0.99309 0.93977 0.89036 1.21541 0.94508 0.99969 0.98483 1.20379 0.95251 1.02547 0.92692 1.19857 0.91844 1.03451 0.96954 1.17918 0.90130 1.05111 0.81900 1.91419 1.79897 1.94198 1.47036 1.21224 1.01624 1.03975 0.91318 1.21168 0.93730 0.98569 0.98401 1.21403 0.94877 0.99593 0.98520 1.20696 0.97959 0.96445 0.91844 1.19334 0.85896 0.87285 0.97479 0.92673 1.42653 1.66685 1.19767 1.06375 1.19580 1.28874 1.00099 0.87269 0.90426 1.25441 1.02475 0.98821 0.99855 1.69810 1.45998 1.17505 1.28568 0.85277 0.76383 0.78470 0.80505 1.22000 1.22677 1.19222 0.91175 0.93221 0.94410 0.94072 0.89259 0.91044 0.88748 0.82888 0.82883 0.86367 0.79025 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.95 71.98 0.64 -3.50 16 2 C -0.09 -2.80 2.53 -10.78 -0.03 -2.83 16 3 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 4 C -0.11 -3.26 5.24 30.62 0.16 -3.10 16 5 C -0.07 -2.08 5.35 29.74 0.16 -1.92 16 6 C -0.12 -4.04 5.74 -19.82 -0.11 -4.16 16 7 C 0.07 2.20 7.22 22.47 0.16 2.36 16 8 F -0.15 -4.53 16.46 44.97 0.74 -3.79 16 9 C -0.16 -4.66 10.02 22.25 0.22 -4.43 16 10 C -0.10 -2.96 10.05 22.20 0.22 -2.74 16 11 C -0.13 -4.40 9.22 22.37 0.21 -4.19 16 12 C -0.07 -2.43 5.30 -19.87 -0.11 -2.53 16 13 C 0.21 8.00 2.30 44.13 0.10 8.10 16 14 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 15 N -0.72 -34.33 4.18 -327.06 -1.37 -35.70 16 16 C -0.23 -11.97 9.46 84.03 0.79 -11.17 16 17 H 0.08 3.91 7.21 -2.91 -0.02 3.89 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 19 N -0.97 -58.41 13.06 21.65 0.28 -58.12 16 20 Si 0.96 45.53 29.55 68.60 2.03 47.56 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.45 6.87 -2.39 -0.02 1.44 16 27 H 0.04 1.53 6.76 -2.38 -0.02 1.51 16 28 H 0.09 2.21 8.13 -2.39 -0.02 2.19 16 29 H 0.07 2.04 7.84 -2.39 -0.02 2.02 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.12 4.24 7.35 -2.91 -0.02 4.22 16 34 H 0.38 19.67 5.74 -92.71 -0.53 19.13 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -61.62 286.33 5.14 -56.48 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.56 Total: 27.35 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 2.89 Total: -33.78 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -1.08 Total: -93.82 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.74 Total: -3.79 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -61.62 5.14 -56.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309461420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.734 kcal (2) G-P(sol) polarization free energy of solvation -61.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds