Wall clock time and date at job start Mon Mar 30 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46869 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99849 * 2 1 3 5 5 H 1.07999 * 119.99754 * 245.45348 * 4 2 1 6 6 C 1.37876 * 120.00079 * 65.46442 * 4 2 1 7 7 N 1.31517 * 119.99704 * 9.54960 * 6 4 2 8 8 Si 1.86801 * 120.00019 * 189.55886 * 6 4 2 9 9 H 1.48496 * 109.47170 * 84.99025 * 8 6 4 10 10 H 1.48496 * 109.46969 * 204.98941 * 8 6 4 11 11 H 1.48497 * 109.47025 * 324.98842 * 8 6 4 12 12 N 1.46507 * 109.47439 * 119.99693 * 2 1 3 13 13 C 1.39823 * 119.99908 * 275.00768 * 12 2 1 14 14 C 1.38902 * 120.04898 * 0.02562 * 13 12 2 15 15 C 1.38104 * 119.94638 * 179.97438 * 14 13 12 16 16 C 1.38487 * 120.04970 * 359.74399 * 15 14 13 17 17 F 1.35096 * 119.95062 * 180.28346 * 16 15 14 18 18 C 1.38449 * 120.09889 * 0.50885 * 16 15 14 19 19 C 1.50697 * 119.97381 * 179.76484 * 18 16 15 20 20 C 1.52994 * 117.50136 * 239.72637 * 19 18 16 21 21 C 1.52995 * 60.03323 * 252.52425 * 20 19 18 22 22 C 1.38140 * 120.04805 * 359.49457 * 18 16 15 23 23 H 1.08999 * 109.47041 * 183.66319 * 1 2 3 24 24 H 1.09002 * 109.47523 * 303.65634 * 1 2 3 25 25 H 1.08992 * 109.47339 * 63.65768 * 1 2 3 26 26 H 0.97006 * 119.99570 * 180.02562 * 7 6 4 27 27 H 0.96996 * 119.99885 * 94.99899 * 12 2 1 28 28 H 1.07994 * 120.02652 * 0.02562 * 14 13 12 29 29 H 1.07994 * 119.97059 * 179.97438 * 15 14 13 30 30 H 1.09004 * 115.55827 * 25.41968 * 19 18 16 31 31 H 1.09001 * 117.50270 * 145.02140 * 20 19 18 32 32 H 1.09003 * 117.49845 * 0.02562 * 20 19 18 33 33 H 1.09002 * 117.50254 * 107.47446 * 21 20 19 34 34 H 1.09005 * 117.50152 * 252.47460 * 21 20 19 35 35 H 1.07997 * 120.02331 * 180.26964 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0356 -2.5935 8 14 2.1760 -1.1781 -4.0101 9 1 1.0241 -2.0611 -4.3240 10 1 2.4227 -0.2615 -5.1520 11 1 3.3845 -2.0073 -3.7709 12 7 2.0184 -0.6906 1.1962 13 6 2.1518 0.0070 2.4007 14 6 1.8211 1.3546 2.4643 15 6 1.9532 2.0414 3.6551 16 6 2.4099 1.3863 4.7865 17 9 2.5329 2.0587 5.9518 18 6 2.7451 0.0444 4.7241 19 6 3.2469 -0.6643 5.9557 20 6 4.6423 -1.2885 5.8924 21 6 3.4028 -2.1853 5.8815 22 6 2.6146 -0.6465 3.5351 23 1 -0.3633 -1.0256 0.0657 24 1 -0.3634 0.5695 0.8554 25 1 -0.3633 0.4560 -0.9209 26 1 1.1317 1.4104 -3.4723 27 1 2.2491 -1.6317 1.1527 28 1 1.4601 1.8646 1.5835 29 1 1.6965 3.0892 3.7049 30 1 2.9295 -0.2365 6.9067 31 1 5.2431 -1.2712 6.8018 32 1 5.1977 -1.1861 4.9601 33 1 3.1424 -2.6726 4.9419 34 1 3.1883 -2.7584 6.7836 35 1 2.8721 -1.6943 3.4879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309528439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:33 Heat of formation + Delta-G solvation = -3.940846 kcal Electronic energy + Delta-G solvation = -17610.030749 eV Core-core repulsion = 14715.689547 eV Total energy + Delta-G solvation = -2894.341202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.25657 -39.25725 -37.09798 -35.15593 -32.66881 -30.44234 -29.67642 -27.07268 -25.26281 -23.95172 -22.48628 -21.69247 -21.06803 -19.32971 -17.63672 -16.93152 -16.04978 -15.79182 -15.10892 -14.92424 -14.64120 -14.15185 -13.82658 -13.66138 -12.80219 -12.65584 -12.36212 -12.29153 -11.86049 -11.67438 -11.47748 -11.25170 -11.04595 -10.82265 -10.75164 -10.57176 -10.40869 -10.24059 -10.08352 -9.29751 -9.03994 -8.54159 -8.34806 -6.57847 -6.23623 -4.28355 1.66451 1.93150 3.20374 3.27507 3.29043 3.81894 4.19896 4.29292 4.44886 4.63442 4.84805 4.98361 5.06324 5.10707 5.18882 5.41126 5.58256 5.72088 5.75671 5.88838 6.06281 6.11753 6.30723 6.33254 6.59003 6.73441 6.77435 6.79770 6.87007 6.92890 7.18972 7.42063 7.57799 7.68147 7.96441 8.24882 8.62369 8.83362 9.37631 10.84502 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.005087 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.516006 B = 5502.989217 C = 6078.344338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.721 5.721 13 C 0.235 3.765 14 C -0.180 4.180 15 C -0.097 4.097 16 C 0.009 3.991 17 F -0.155 7.155 18 C -0.036 4.036 19 C -0.113 4.113 20 C -0.168 4.168 21 C -0.175 4.175 22 C -0.196 4.196 23 H 0.031 0.969 24 H 0.018 0.982 25 H 0.072 0.928 26 H 0.265 0.735 27 H 0.390 0.610 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -2.641 12.610 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.342 5.342 13 C 0.125 3.875 14 C -0.203 4.203 15 C -0.117 4.117 16 C -0.012 4.012 17 F -0.134 7.134 18 C -0.038 4.038 19 C -0.131 4.131 20 C -0.205 4.205 21 C -0.212 4.212 22 C -0.219 4.219 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.224 0.776 28 H 0.154 0.846 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.190 -2.374 12.265 12.684 hybrid contribution 0.206 -0.674 -0.766 1.040 sum 2.396 -3.047 11.500 12.136 Atomic orbital electron populations 1.22128 0.99119 0.99097 1.00282 1.18770 0.90276 0.94057 0.80747 0.93411 1.21135 1.36988 1.08761 0.90356 0.92120 1.24868 0.94867 0.94654 0.99059 1.69949 1.44005 1.13762 1.24373 0.86510 0.78785 0.79977 0.82165 1.20395 1.21107 1.19900 1.45622 1.69098 1.12079 1.07431 1.18018 0.91211 0.91521 0.86740 1.20685 1.07921 0.93389 0.98288 1.20796 0.99462 0.99885 0.91509 1.17029 1.11610 0.90333 0.82272 1.91371 1.94900 1.80347 1.46825 1.18680 0.99431 0.91737 0.93910 1.20885 1.00339 0.94731 0.97192 1.23002 0.90437 1.03670 1.03421 1.23057 1.02361 0.92309 1.03483 1.20215 1.10373 1.00009 0.91325 0.94961 0.96260 0.90881 0.92490 0.77634 0.84639 0.85579 0.87071 0.88723 0.88428 0.88177 0.88694 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.31 37.16 0.35 -2.98 16 2 C 0.26 6.19 2.12 -69.08 -0.15 6.04 16 3 H 0.05 1.24 6.43 -51.93 -0.33 0.90 16 4 C -0.53 -13.70 8.66 -34.44 -0.30 -13.99 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.80 5.17 -17.82 -0.09 1.71 16 7 N -0.88 -23.96 12.16 55.43 0.67 -23.29 16 8 Si 0.90 20.22 29.55 -169.99 -5.02 15.20 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.72 -14.41 5.25 -53.26 -0.28 -14.69 16 13 C 0.24 4.37 6.64 -83.74 -0.56 3.81 16 14 C -0.18 -3.32 8.87 -39.38 -0.35 -3.67 16 15 C -0.10 -1.62 10.02 -39.54 -0.40 -2.02 16 16 C 0.01 0.15 7.24 -39.41 -0.29 -0.13 16 17 F -0.16 -2.56 16.60 2.25 0.04 -2.52 16 18 C -0.04 -0.57 5.61 -104.58 -0.59 -1.16 16 19 C -0.11 -1.49 5.80 -91.74 -0.53 -2.02 16 20 C -0.17 -1.90 10.16 -26.74 -0.27 -2.17 16 21 C -0.18 -1.92 9.86 -26.70 -0.26 -2.19 16 22 C -0.20 -3.19 9.14 -39.39 -0.36 -3.55 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.07 1.80 6.83 -51.93 -0.35 1.44 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.39 7.24 8.54 -40.82 -0.35 6.89 16 28 H 0.14 2.64 6.05 -52.49 -0.32 2.32 16 29 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.11 1.41 7.86 -51.93 -0.41 1.00 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.11 6.18 -51.93 -0.32 0.79 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.12 1.78 6.02 -52.49 -0.32 1.46 16 LS Contribution 295.71 15.07 4.46 4.46 Total: -1.00 -26.54 295.71 -8.38 -34.91 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.45 Total: 8.25 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.79 Total: -22.32 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.39 Total: -37.98 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.54 -8.38 -34.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.973 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds