Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46869 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99849 * 2 1 3 5 5 H 1.07999 * 119.99754 * 245.45348 * 4 2 1 6 6 C 1.37876 * 120.00079 * 65.46442 * 4 2 1 7 7 N 1.31517 * 119.99704 * 9.54960 * 6 4 2 8 8 Si 1.86801 * 120.00019 * 189.55886 * 6 4 2 9 9 H 1.48496 * 109.47170 * 84.99025 * 8 6 4 10 10 H 1.48496 * 109.46969 * 204.98941 * 8 6 4 11 11 H 1.48497 * 109.47025 * 324.98842 * 8 6 4 12 12 N 1.46507 * 109.47439 * 119.99693 * 2 1 3 13 13 C 1.39823 * 119.99908 * 275.00768 * 12 2 1 14 14 C 1.38902 * 120.04898 * 0.02562 * 13 12 2 15 15 C 1.38104 * 119.94638 * 179.97438 * 14 13 12 16 16 C 1.38487 * 120.04970 * 359.74399 * 15 14 13 17 17 F 1.35096 * 119.95062 * 180.28346 * 16 15 14 18 18 C 1.38449 * 120.09889 * 0.50885 * 16 15 14 19 19 C 1.50697 * 119.97381 * 179.76484 * 18 16 15 20 20 C 1.52994 * 117.50136 * 239.72637 * 19 18 16 21 21 C 1.52995 * 60.03323 * 252.52425 * 20 19 18 22 22 C 1.38140 * 120.04805 * 359.49457 * 18 16 15 23 23 H 1.08999 * 109.47041 * 183.66319 * 1 2 3 24 24 H 1.09002 * 109.47523 * 303.65634 * 1 2 3 25 25 H 1.08992 * 109.47339 * 63.65768 * 1 2 3 26 26 H 0.97006 * 119.99570 * 180.02562 * 7 6 4 27 27 H 0.96996 * 119.99885 * 94.99899 * 12 2 1 28 28 H 1.07994 * 120.02652 * 0.02562 * 14 13 12 29 29 H 1.07994 * 119.97059 * 179.97438 * 15 14 13 30 30 H 1.09004 * 115.55827 * 25.41968 * 19 18 16 31 31 H 1.09001 * 117.50270 * 145.02140 * 20 19 18 32 32 H 1.09003 * 117.49845 * 0.02562 * 20 19 18 33 33 H 1.09002 * 117.50254 * 107.47446 * 21 20 19 34 34 H 1.09005 * 117.50152 * 252.47460 * 21 20 19 35 35 H 1.07997 * 120.02331 * 180.26964 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0356 -2.5935 8 14 2.1760 -1.1781 -4.0101 9 1 1.0241 -2.0611 -4.3240 10 1 2.4227 -0.2615 -5.1520 11 1 3.3845 -2.0073 -3.7709 12 7 2.0184 -0.6906 1.1962 13 6 2.1518 0.0070 2.4007 14 6 1.8211 1.3546 2.4643 15 6 1.9532 2.0414 3.6551 16 6 2.4099 1.3863 4.7865 17 9 2.5329 2.0587 5.9518 18 6 2.7451 0.0444 4.7241 19 6 3.2469 -0.6643 5.9557 20 6 4.6423 -1.2885 5.8924 21 6 3.4028 -2.1853 5.8815 22 6 2.6146 -0.6465 3.5351 23 1 -0.3633 -1.0256 0.0657 24 1 -0.3634 0.5695 0.8554 25 1 -0.3633 0.4560 -0.9209 26 1 1.1317 1.4104 -3.4723 27 1 2.2491 -1.6317 1.1527 28 1 1.4601 1.8646 1.5835 29 1 1.6965 3.0892 3.7049 30 1 2.9295 -0.2365 6.9067 31 1 5.2431 -1.2712 6.8018 32 1 5.1977 -1.1861 4.9601 33 1 3.1424 -2.6726 4.9419 34 1 3.1883 -2.7584 6.7836 35 1 2.8721 -1.6943 3.4879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309528439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -16.513809 kcal Electronic energy + Delta-G solvation = -17610.575953 eV Core-core repulsion = 14715.689547 eV Total energy + Delta-G solvation = -2894.886407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.58633 -40.57352 -38.30644 -36.69298 -34.47225 -31.90642 -31.20695 -28.61326 -27.21503 -25.20433 -23.55435 -22.99014 -22.53302 -20.69828 -19.19025 -18.39059 -17.54998 -17.28757 -16.66169 -16.37324 -15.93038 -15.47686 -15.17397 -15.00517 -14.37903 -14.31512 -13.84966 -13.75017 -13.54927 -12.96353 -12.89294 -12.77036 -12.55557 -12.38271 -12.28074 -12.13859 -11.75790 -11.64833 -11.23429 -11.12695 -10.65485 -10.44850 -9.61797 -8.24945 -8.04896 -6.32503 0.34415 0.55314 1.42900 1.44372 1.52958 2.37267 2.68221 2.85911 3.10664 3.15056 3.51342 3.65128 3.86028 4.02629 4.17168 4.27523 4.42575 4.48639 4.68711 4.72306 4.81457 4.95752 5.01930 5.06662 5.08729 5.14194 5.28599 5.36349 5.40476 5.45300 5.50893 5.62315 5.75920 5.99566 6.09573 6.52589 6.82133 7.17497 7.38452 8.86412 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.005087 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.516006 B = 5502.989217 C = 6078.344338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.017 0.983 4 C -0.548 4.548 5 H 0.063 0.937 6 C 0.022 3.978 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.724 5.724 13 C 0.218 3.782 14 C -0.199 4.199 15 C -0.096 4.096 16 C 0.002 3.998 17 F -0.153 7.153 18 C -0.032 4.032 19 C -0.137 4.137 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.188 4.188 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.397 0.603 28 H 0.117 0.883 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -4.147 13.931 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.035 0.965 4 C -0.586 4.586 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.348 5.348 13 C 0.110 3.890 14 C -0.222 4.222 15 C -0.115 4.115 16 C -0.019 4.019 17 F -0.132 7.132 18 C -0.034 4.034 19 C -0.155 4.155 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.211 4.211 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.232 0.768 28 H 0.135 0.865 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.931 -3.886 13.626 14.469 hybrid contribution 0.014 -0.162 -1.035 1.047 sum 2.945 -4.048 12.591 13.550 Atomic orbital electron populations 1.21949 0.98718 0.99250 0.99415 1.18403 0.90493 0.92543 0.81648 0.96537 1.21485 1.36875 1.08874 0.91407 0.91920 1.25642 0.94853 0.95474 1.01898 1.70065 1.45092 1.15123 1.24916 0.85527 0.78756 0.78514 0.78580 1.19818 1.21123 1.19317 1.45276 1.70268 1.12267 1.07019 1.18209 0.92214 0.91673 0.86897 1.20625 1.09379 0.93799 0.98404 1.20943 0.98874 1.00770 0.90941 1.17205 1.11528 0.90905 0.82258 1.91377 1.94868 1.80361 1.46574 1.19004 0.98030 0.91503 0.94855 1.20947 1.02281 0.96320 0.95946 1.23090 0.89914 1.02616 1.04109 1.23170 1.01311 0.90831 1.04515 1.20386 1.09263 1.00901 0.90551 0.94371 0.95218 0.93295 0.92531 0.76839 0.86489 0.83824 0.86583 0.86625 0.89181 0.88283 0.86460 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.18 9.31 71.98 0.67 -5.51 16 2 C 0.27 13.08 2.12 44.24 0.09 13.17 16 3 H 0.02 0.91 6.43 -2.39 -0.02 0.89 16 4 C -0.55 -28.33 8.66 25.60 0.22 -28.11 16 5 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 1.16 5.17 84.65 0.44 1.59 16 7 N -0.91 -50.57 12.16 21.45 0.26 -50.31 16 8 Si 0.96 41.46 29.55 68.60 2.03 43.48 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 12 N -0.72 -29.04 5.25 -322.42 -1.69 -30.73 16 13 C 0.22 8.07 6.64 38.17 0.25 8.32 16 14 C -0.20 -7.48 8.87 22.40 0.20 -7.28 16 15 C -0.10 -3.18 10.02 22.30 0.22 -2.95 16 16 C 0.00 0.08 7.24 22.38 0.16 0.24 16 17 F -0.15 -4.79 16.60 44.97 0.75 -4.04 16 18 C -0.03 -0.97 5.61 -19.84 -0.11 -1.08 16 19 C -0.14 -3.22 5.80 -11.52 -0.07 -3.29 16 20 C -0.16 -3.11 10.16 30.59 0.31 -2.80 16 21 C -0.16 -2.99 9.86 30.62 0.30 -2.69 16 22 C -0.19 -5.86 9.14 22.39 0.20 -5.66 16 23 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 24 H 0.03 1.25 7.66 -2.39 -0.02 1.23 16 25 H 0.05 2.46 6.83 -2.39 -0.02 2.45 16 26 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 27 H 0.40 14.54 8.54 -92.71 -0.79 13.75 16 28 H 0.12 4.80 6.05 -2.91 -0.02 4.78 16 29 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.12 2.63 7.86 -2.39 -0.02 2.61 16 31 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 1.87 6.18 -2.39 -0.01 1.85 16 34 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.14 3.81 6.02 -2.91 -0.02 3.80 16 Total: -1.00 -56.33 295.71 4.56 -51.77 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.32 Total: 25.87 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 2.90 Total: -36.04 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.43 Total: -81.05 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.75 Total: -4.04 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -56.33 4.56 -51.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.260 kcal (2) G-P(sol) polarization free energy of solvation -56.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds