Wall clock time and date at job start Mon Mar 30 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.50698 * 109.47115 * 119.99441 * 2 1 3 5 5 H 1.07995 * 120.00161 * 120.00197 * 4 2 1 6 6 C 1.37880 * 120.00005 * 300.00212 * 4 2 1 7 7 N 1.31509 * 120.00318 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47630 * 89.99831 * 8 6 4 10 10 H 1.48498 * 109.47101 * 210.00273 * 8 6 4 11 11 H 1.48501 * 109.46819 * 329.99823 * 8 6 4 12 12 N 1.46498 * 109.47365 * 239.99877 * 2 1 3 13 13 C 1.39817 * 120.00307 * 84.99688 * 12 2 1 14 14 C 1.38905 * 120.04530 * 0.02562 * 13 12 2 15 15 C 1.38099 * 119.94416 * 179.97438 * 14 13 12 16 16 C 1.38480 * 120.05329 * 359.97206 * 15 14 13 17 17 F 1.35104 * 119.94925 * 180.02562 * 16 15 14 18 18 C 1.38439 * 120.10052 * 0.04730 * 16 15 14 19 19 C 1.50702 * 119.98028 * 179.97438 * 18 16 15 20 20 C 1.52992 * 117.50239 * 188.60279 * 19 18 16 21 21 C 1.52998 * 117.50044 * 119.97329 * 19 18 16 22 22 C 1.38144 * 120.04758 * 359.95540 * 18 16 15 23 23 H 1.08999 * 109.46642 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46743 * 300.00455 * 1 2 3 25 25 H 1.09000 * 109.47003 * 60.00255 * 1 2 3 26 26 H 0.97001 * 120.00406 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99302 * 264.99654 * 12 2 1 28 28 H 1.07997 * 120.02559 * 359.69658 * 14 13 12 29 29 H 1.08001 * 119.97047 * 179.97438 * 15 14 13 30 30 H 1.09000 * 115.54456 * 334.30758 * 19 18 16 31 31 H 1.09004 * 117.49764 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.50264 * 145.02033 * 20 19 18 33 33 H 1.08994 * 117.50080 * 214.98008 * 21 19 18 34 34 H 1.08997 * 117.50003 * 359.97438 * 21 19 18 35 35 H 1.08005 * 120.02351 * 180.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9436 0.8304 2.6034 8 14 2.3225 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3444 -0.9486 5.1124 11 1 2.4880 -2.5650 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 2.1519 0.0068 -2.4006 14 6 1.8223 1.3547 -2.4640 15 6 1.9555 2.0416 -3.6546 16 6 2.4178 1.3879 -4.7845 17 9 2.5478 2.0621 -5.9480 18 6 2.7465 0.0445 -4.7236 19 6 3.2488 -0.6644 -5.9550 20 6 3.4035 -2.1847 -5.8814 21 6 4.6440 -1.2891 -5.8909 22 6 2.6149 -0.6467 -3.5348 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1621 3.4844 27 1 2.2492 -1.6318 -1.1524 28 1 1.4579 1.8639 -1.5841 29 1 1.6989 3.0895 -3.7045 30 1 2.9325 -0.2359 -6.9060 31 1 3.1424 -2.6722 -4.9421 32 1 3.1889 -2.7568 -6.7840 33 1 5.2454 -1.2720 -6.7998 34 1 5.1988 -1.1870 -4.9583 35 1 2.8718 -1.6947 -3.4877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309528440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:36 Heat of formation + Delta-G solvation = -2.658141 kcal Electronic energy + Delta-G solvation = -17614.856488 eV Core-core repulsion = 14720.570908 eV Total energy + Delta-G solvation = -2894.285580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.25720 -39.26146 -37.10335 -35.16708 -32.69847 -30.42835 -29.61129 -27.03000 -25.29651 -23.94865 -22.48912 -21.68524 -21.04339 -19.32289 -17.63442 -16.93449 -16.04913 -15.80169 -15.11442 -14.93606 -14.64413 -14.15985 -13.83546 -13.65756 -12.78047 -12.67469 -12.36315 -12.29336 -11.79917 -11.66453 -11.43978 -11.22074 -11.06827 -10.85303 -10.69278 -10.54386 -10.32196 -10.24907 -10.11978 -9.26121 -9.02920 -8.55682 -8.35197 -6.57327 -6.21297 -4.29805 1.66153 1.92985 3.19815 3.26956 3.29009 3.81755 4.19066 4.29086 4.45266 4.63300 4.84657 4.98226 5.06116 5.11541 5.18624 5.40913 5.58065 5.71820 5.75450 5.88579 6.06198 6.11601 6.30773 6.33033 6.64381 6.73276 6.79477 6.80939 6.90465 6.98958 7.23519 7.43692 7.61149 7.77957 8.00172 8.26604 8.61337 8.83251 9.37688 10.84505 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.005081 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.638850 B = 5509.219291 C = 6081.065254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.266 3.734 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.721 5.721 13 C 0.235 3.765 14 C -0.180 4.180 15 C -0.097 4.097 16 C 0.009 3.991 17 F -0.155 7.155 18 C -0.036 4.036 19 C -0.113 4.113 20 C -0.175 4.175 21 C -0.169 4.169 22 C -0.196 4.196 23 H 0.029 0.971 24 H 0.090 0.910 25 H 0.014 0.986 26 H 0.265 0.735 27 H 0.391 0.609 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -2.255 -12.508 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.342 5.342 13 C 0.125 3.875 14 C -0.203 4.203 15 C -0.117 4.117 16 C -0.013 4.013 17 F -0.134 7.134 18 C -0.037 4.037 19 C -0.131 4.131 20 C -0.212 4.212 21 C -0.205 4.205 22 C -0.219 4.219 23 H 0.048 0.952 24 H 0.109 0.891 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.224 0.776 28 H 0.153 0.847 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.837 -2.013 -12.158 12.646 hybrid contribution 0.339 -0.619 0.730 1.016 sum 3.176 -2.632 -11.428 12.150 Atomic orbital electron populations 1.22193 0.98709 0.99638 1.00662 1.18761 0.90745 0.93479 0.80676 0.94132 1.21189 1.32256 1.13304 0.90236 0.92119 1.24869 0.94712 0.94975 0.99076 1.69866 1.35946 1.22535 1.24014 0.86438 0.78634 0.79902 0.82104 1.20511 1.21023 1.19862 1.45641 1.69068 1.12099 1.07433 1.18016 0.91202 0.91514 0.86762 1.20678 1.07950 0.93401 0.98285 1.20792 0.99425 0.99907 0.91530 1.17025 1.11601 0.90269 0.82365 1.91373 1.94836 1.80257 1.46980 1.18681 0.99451 0.91706 0.93909 1.20874 1.00330 0.94744 0.97197 1.23047 1.02323 0.92330 1.03491 1.23002 0.90425 1.03705 1.03415 1.20217 1.10377 1.00019 0.91323 0.95188 0.89145 0.96713 0.92517 0.77614 0.84677 0.85585 0.87073 0.88172 0.88687 0.88724 0.88434 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.20 37.16 0.34 -3.20 16 2 C 0.27 6.26 2.25 -69.08 -0.16 6.10 16 3 H 0.04 1.04 6.49 -51.93 -0.34 0.71 16 4 C -0.53 -13.64 8.73 -34.44 -0.30 -13.94 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -23.84 11.32 55.43 0.63 -23.22 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.72 -14.47 5.25 -53.27 -0.28 -14.75 16 13 C 0.24 4.38 6.64 -83.74 -0.56 3.82 16 14 C -0.18 -3.32 8.85 -39.39 -0.35 -3.67 16 15 C -0.10 -1.62 10.02 -39.54 -0.40 -2.01 16 16 C 0.01 0.15 7.24 -39.42 -0.29 -0.14 16 17 F -0.16 -2.56 16.60 2.25 0.04 -2.52 16 18 C -0.04 -0.57 5.61 -104.58 -0.59 -1.16 16 19 C -0.11 -1.49 5.79 -91.78 -0.53 -2.02 16 20 C -0.18 -1.93 9.86 -26.73 -0.26 -2.19 16 21 C -0.17 -1.90 10.16 -26.73 -0.27 -2.17 16 22 C -0.20 -3.20 9.14 -39.39 -0.36 -3.56 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 25 H 0.01 0.30 7.70 -51.93 -0.40 -0.10 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.39 7.30 8.55 -40.82 -0.35 6.95 16 28 H 0.14 2.62 6.11 -52.49 -0.32 2.30 16 29 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.11 1.41 7.86 -51.93 -0.41 1.00 16 31 H 0.10 1.12 6.18 -51.93 -0.32 0.79 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.12 1.78 6.02 -52.48 -0.32 1.47 16 LS Contribution 294.48 15.07 4.44 4.44 Total: -1.00 -26.41 294.48 -8.43 -34.84 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.42 Total: 8.49 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.81 Total: -22.49 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.35 Total: -37.97 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.41 -8.43 -34.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.177 kcal (2) G-P(sol) polarization free energy of solvation -26.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds