Wall clock time and date at job start Mon Mar 30 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.50698 * 109.47115 * 119.99441 * 2 1 3 5 5 H 1.07995 * 120.00161 * 120.00197 * 4 2 1 6 6 C 1.37880 * 120.00005 * 300.00212 * 4 2 1 7 7 N 1.31509 * 120.00318 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47630 * 89.99831 * 8 6 4 10 10 H 1.48498 * 109.47101 * 210.00273 * 8 6 4 11 11 H 1.48501 * 109.46819 * 329.99823 * 8 6 4 12 12 N 1.46498 * 109.47365 * 239.99877 * 2 1 3 13 13 C 1.39817 * 120.00307 * 84.99688 * 12 2 1 14 14 C 1.38905 * 120.04530 * 0.02562 * 13 12 2 15 15 C 1.38099 * 119.94416 * 179.97438 * 14 13 12 16 16 C 1.38480 * 120.05329 * 359.97206 * 15 14 13 17 17 F 1.35104 * 119.94925 * 180.02562 * 16 15 14 18 18 C 1.38439 * 120.10052 * 0.04730 * 16 15 14 19 19 C 1.50702 * 119.98028 * 179.97438 * 18 16 15 20 20 C 1.52992 * 117.50239 * 188.60279 * 19 18 16 21 21 C 1.52998 * 117.50044 * 119.97329 * 19 18 16 22 22 C 1.38144 * 120.04758 * 359.95540 * 18 16 15 23 23 H 1.08999 * 109.46642 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46743 * 300.00455 * 1 2 3 25 25 H 1.09000 * 109.47003 * 60.00255 * 1 2 3 26 26 H 0.97001 * 120.00406 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99302 * 264.99654 * 12 2 1 28 28 H 1.07997 * 120.02559 * 359.69658 * 14 13 12 29 29 H 1.08001 * 119.97047 * 179.97438 * 15 14 13 30 30 H 1.09000 * 115.54456 * 334.30758 * 19 18 16 31 31 H 1.09004 * 117.49764 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.50264 * 145.02033 * 20 19 18 33 33 H 1.08994 * 117.50080 * 214.98008 * 21 19 18 34 34 H 1.08997 * 117.50003 * 359.97438 * 21 19 18 35 35 H 1.08005 * 120.02351 * 180.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9436 0.8304 2.6034 8 14 2.3225 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3444 -0.9486 5.1124 11 1 2.4880 -2.5650 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 2.1519 0.0068 -2.4006 14 6 1.8223 1.3547 -2.4640 15 6 1.9555 2.0416 -3.6546 16 6 2.4178 1.3879 -4.7845 17 9 2.5478 2.0621 -5.9480 18 6 2.7465 0.0445 -4.7236 19 6 3.2488 -0.6644 -5.9550 20 6 3.4035 -2.1847 -5.8814 21 6 4.6440 -1.2891 -5.8909 22 6 2.6149 -0.6467 -3.5348 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1621 3.4844 27 1 2.2492 -1.6318 -1.1524 28 1 1.4579 1.8639 -1.5841 29 1 1.6989 3.0895 -3.7045 30 1 2.9325 -0.2359 -6.9060 31 1 3.1424 -2.6722 -4.9421 32 1 3.1889 -2.7568 -6.7840 33 1 5.2454 -1.2720 -6.7998 34 1 5.1988 -1.1870 -4.9583 35 1 2.8718 -1.6947 -3.4877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309528440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:36 Heat of formation + Delta-G solvation = -15.040980 kcal Electronic energy + Delta-G solvation = -17615.393448 eV Core-core repulsion = 14720.570908 eV Total energy + Delta-G solvation = -2894.822540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.58617 -40.57855 -38.31497 -36.71137 -34.49220 -31.87211 -31.16693 -28.58676 -27.25300 -25.20178 -23.55024 -22.98340 -22.52133 -20.69753 -19.18610 -18.39478 -17.55254 -17.29491 -16.68527 -16.37580 -15.92652 -15.48856 -15.17517 -15.00663 -14.35877 -14.34325 -13.85030 -13.73897 -13.45659 -12.94064 -12.88468 -12.81073 -12.56989 -12.28662 -12.27585 -12.13081 -11.75373 -11.68342 -11.23563 -11.07775 -10.69116 -10.43721 -9.62145 -8.21370 -8.05307 -6.33607 0.34141 0.55128 1.42975 1.44296 1.53745 2.36936 2.68050 2.85775 3.12115 3.14878 3.51109 3.64847 3.85796 4.02494 4.16904 4.27315 4.42422 4.48329 4.68831 4.74269 4.81300 4.98552 5.02714 5.07121 5.12496 5.14195 5.28484 5.36291 5.42547 5.45771 5.50769 5.63088 5.84152 6.03355 6.11064 6.52125 6.81093 7.17065 7.38783 8.86743 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.005081 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.638850 B = 5509.219291 C = 6081.065254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.275 3.725 3 H 0.013 0.987 4 C -0.547 4.547 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.725 5.725 13 C 0.218 3.782 14 C -0.199 4.199 15 C -0.096 4.096 16 C 0.002 3.998 17 F -0.153 7.153 18 C -0.032 4.032 19 C -0.137 4.137 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.188 4.188 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.397 0.603 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -3.603 -13.806 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.031 0.969 4 C -0.585 4.585 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.349 5.349 13 C 0.110 3.890 14 C -0.222 4.222 15 C -0.115 4.115 16 C -0.019 4.019 17 F -0.132 7.132 18 C -0.034 4.034 19 C -0.155 4.155 20 C -0.199 4.199 21 C -0.197 4.197 22 C -0.211 4.211 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.231 0.769 28 H 0.135 0.865 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.743 -3.363 -13.497 14.405 hybrid contribution 0.087 -0.156 0.995 1.011 sum 3.830 -3.518 -12.502 13.541 Atomic orbital electron populations 1.22009 0.98642 0.99290 0.99946 1.18395 0.90709 0.92160 0.81629 0.96941 1.21525 1.32266 1.13456 0.91277 0.91956 1.25648 0.94902 0.95631 1.01863 1.69989 1.36877 1.23710 1.24567 0.85460 0.77926 0.79045 0.78612 1.20342 1.20837 1.19114 1.45291 1.70254 1.12274 1.07043 1.18211 0.92225 0.91688 0.86897 1.20623 1.09367 0.93785 0.98438 1.20943 0.98810 1.00809 0.90940 1.17202 1.11498 0.90835 0.82362 1.91379 1.94801 1.80266 1.46728 1.19004 0.98056 0.91487 0.94841 1.20937 1.02293 0.96310 0.95952 1.23160 1.01329 0.90867 1.04503 1.23091 0.89890 1.02597 1.04121 1.20386 1.09286 1.00901 0.90564 0.95154 0.91494 0.95684 0.92525 0.76864 0.86455 0.83780 0.86585 0.88309 0.86469 0.86616 0.89154 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.20 71.98 0.66 -5.94 16 2 C 0.27 13.23 2.25 44.25 0.10 13.33 16 3 H 0.01 0.68 6.49 -2.38 -0.02 0.67 16 4 C -0.55 -28.31 8.73 25.60 0.22 -28.09 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.04 11.32 21.45 0.24 -49.80 16 8 Si 0.96 41.45 29.54 68.60 2.03 43.47 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 N -0.72 -29.22 5.25 -322.44 -1.69 -30.91 16 13 C 0.22 8.07 6.64 38.17 0.25 8.32 16 14 C -0.20 -7.46 8.85 22.40 0.20 -7.26 16 15 C -0.10 -3.15 10.02 22.29 0.22 -2.93 16 16 C 0.00 0.08 7.24 22.38 0.16 0.24 16 17 F -0.15 -4.78 16.60 44.97 0.75 -4.03 16 18 C -0.03 -0.97 5.61 -19.84 -0.11 -1.08 16 19 C -0.14 -3.22 5.79 -11.54 -0.07 -3.29 16 20 C -0.16 -3.00 9.86 30.59 0.30 -2.70 16 21 C -0.16 -3.10 10.16 30.60 0.31 -2.79 16 22 C -0.19 -5.89 9.14 22.39 0.20 -5.69 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 25 H 0.02 1.07 7.70 -2.39 -0.02 1.06 16 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.40 14.68 8.55 -92.71 -0.79 13.89 16 28 H 0.12 4.78 6.11 -2.91 -0.02 4.76 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.12 2.63 7.86 -2.39 -0.02 2.61 16 31 H 0.10 1.88 6.18 -2.39 -0.01 1.86 16 32 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.14 3.82 6.02 -2.91 -0.02 3.81 16 Total: -1.00 -55.93 294.48 4.55 -51.37 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.32 Total: 26.27 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 2.91 Total: -36.38 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.45 Total: -80.70 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.75 Total: -4.03 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -55.93 4.55 -51.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.333 kcal (2) G-P(sol) polarization free energy of solvation -55.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds