Wall clock time and date at job start Mon Mar 30 2020 07:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99423 * 2 1 4 4 H 1.48500 * 109.47287 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47288 * 30.00101 * 3 2 1 6 6 H 1.48502 * 109.46838 * 149.99712 * 3 2 1 7 7 C 1.37873 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99922 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00163 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00359 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47666 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47181 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47746 * 60.00068 * 9 7 2 24 24 H 1.09005 * 109.46991 * 299.99336 * 9 7 2 25 25 H 1.00907 * 111.00084 * 303.94496 * 10 9 7 26 26 H 1.09004 * 109.47302 * 59.98958 * 11 10 9 27 27 H 1.09009 * 109.47045 * 299.99548 * 11 10 9 28 28 H 1.08999 * 109.46920 * 59.99505 * 12 11 10 29 29 H 1.08993 * 109.46801 * 299.99687 * 12 11 10 30 30 H 1.08999 * 109.47370 * 60.00060 * 13 12 11 31 31 H 1.09006 * 109.47017 * 299.99902 * 13 12 11 32 32 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 33 33 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0013 -2.5788 0.0010 11 6 5.4698 -2.6180 0.0022 12 6 5.9413 -4.0735 0.0027 13 6 7.4707 -4.1142 0.0032 14 6 7.9422 -5.5698 0.0031 15 8 9.3707 -5.6078 0.0042 16 6 9.9551 -6.8347 0.0037 17 6 11.3380 -6.9455 0.0042 18 6 11.9298 -8.1938 0.0042 19 6 11.1450 -9.3322 0.0031 20 6 9.7665 -9.2245 0.0030 21 6 9.1700 -7.9785 0.0031 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6798 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6257 -3.0953 0.7822 26 1 5.8461 -2.1142 0.8926 27 1 5.8475 -2.1137 -0.8874 28 1 5.5650 -4.5776 -0.8876 29 1 5.5638 -4.5774 0.8924 30 1 7.8473 -3.6101 0.8932 31 1 7.8479 -3.6104 -0.8868 32 1 7.5656 -6.0735 -0.8872 33 1 7.5650 -6.0740 0.8928 34 1 11.9515 -6.0566 0.0002 35 1 13.0063 -8.2806 0.0042 36 1 11.6096 -10.3071 0.0027 37 1 9.1558 -10.1151 0.0026 38 1 8.0932 -7.8948 0.0026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309559802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:39 Heat of formation + Delta-G solvation = -28.469315 kcal Electronic energy + Delta-G solvation = -16630.931410 eV Core-core repulsion = 13858.986879 eV Total energy + Delta-G solvation = -2771.944531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32392 -37.80737 -36.29167 -33.80019 -32.19743 -31.28410 -30.16961 -28.59399 -26.17710 -23.55024 -22.66714 -21.70646 -21.16265 -20.82455 -18.43411 -16.81768 -16.54276 -16.33977 -15.97221 -15.31754 -14.74604 -14.52225 -14.05070 -13.77746 -13.67314 -13.64526 -12.96076 -12.61801 -12.34606 -12.00573 -11.89875 -11.78734 -11.64060 -11.18933 -11.02206 -10.90139 -10.68284 -10.49653 -10.36082 -9.83099 -9.30474 -9.30325 -8.60038 -8.46640 -7.50069 -6.07015 -4.05202 1.04175 1.16916 2.94722 3.28297 3.35304 3.37767 3.50822 4.41037 4.51288 4.58395 4.73855 4.74634 4.83922 4.95830 5.06110 5.10047 5.21707 5.25894 5.27740 5.37159 5.57359 5.65128 5.71741 5.80384 5.91299 5.99710 6.05994 6.12182 6.23556 6.34370 6.39662 6.50243 6.76558 7.00686 7.19654 7.58831 7.87396 8.31154 8.63617 9.00577 9.54784 11.06200 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.070278 B = 0.002595 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.320457 B =10787.386045 C =11147.336095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.683 5.683 11 C 0.057 3.943 12 C -0.113 4.113 13 C -0.117 4.117 14 C 0.060 3.940 15 O -0.316 6.316 16 C 0.134 3.866 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.164 4.164 20 C -0.080 4.080 21 C -0.210 4.210 22 H 0.264 0.736 23 H -0.016 1.016 24 H 0.022 0.978 25 H 0.335 0.665 26 H 0.019 0.981 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.941 -16.301 0.844 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.313 5.313 11 C -0.073 4.073 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.015 4.015 15 O -0.230 6.230 16 C 0.088 3.912 17 C -0.175 4.175 18 C -0.100 4.100 19 C -0.182 4.182 20 C -0.098 4.098 21 C -0.229 4.229 22 H 0.074 0.926 23 H 0.002 0.998 24 H 0.040 0.960 25 H 0.152 0.848 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.796 -16.030 0.157 27.869 hybrid contribution 0.333 1.052 0.885 1.414 sum 23.129 -14.978 1.042 27.575 Atomic orbital electron populations 1.69900 1.06155 1.26910 1.50948 1.24921 0.94781 0.99010 0.94716 0.86806 0.80225 0.83764 0.78613 1.20112 1.21180 1.19279 1.21066 0.88955 0.94828 1.50667 0.90298 1.20000 0.96650 0.85017 0.94772 1.60485 1.04496 1.16839 1.49469 1.21898 0.90673 0.94805 0.99911 1.21470 0.92591 0.98169 1.02853 1.21526 0.96385 0.93824 1.03729 1.22927 0.77616 0.99404 1.01541 1.86072 1.22648 1.26066 1.88174 1.19083 0.92594 0.84214 0.95315 1.20483 0.91738 0.98596 1.06686 1.20970 0.99871 0.91597 0.97594 1.21063 0.93840 0.98621 1.04707 1.20978 0.94931 0.96840 0.97086 1.21343 1.00307 0.92571 1.08683 0.92627 0.99824 0.96007 0.84812 0.96249 0.91643 0.90815 0.91935 0.90955 0.90714 0.91780 0.91929 0.85256 0.85473 0.86018 0.85808 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -14.96 9.87 -34.45 -0.34 -15.30 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.16 4.03 4.51 -4.98 -0.02 4.01 16 10 N -0.68 -14.14 6.49 -115.06 -0.75 -14.89 16 11 C 0.06 0.93 5.68 -3.82 -0.02 0.91 16 12 C -0.11 -1.42 5.47 -26.73 -0.15 -1.57 16 13 C -0.12 -1.27 5.58 -26.73 -0.15 -1.42 16 14 C 0.06 0.61 4.74 37.16 0.18 0.79 16 15 O -0.32 -3.72 10.14 -19.42 -0.20 -3.92 16 16 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 17 C -0.16 -1.51 9.99 -39.43 -0.39 -1.91 16 18 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 19 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 20 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 21 C -0.21 -2.04 9.04 -39.44 -0.36 -2.40 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H -0.02 -0.39 7.20 -51.93 -0.37 -0.77 16 24 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 25 H 0.33 6.65 8.72 -39.29 -0.34 6.30 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.10 6.30 -52.48 -0.33 0.77 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -31.74 318.54 -8.90 -40.64 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.05 Total: 0.97 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.81 Total: -17.62 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.03 Total: -41.95 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.74 -8.90 -40.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309559802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.168 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds